Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20645 and ABZR87_RS20650 are separated by 16 nucleotides ABZR87_RS20650 and ABZR87_RS20655 are separated by 32 nucleotides
ABZR87_RS20645: ABZR87_RS20645 - aldehyde dehydrogenase, at 1,019,850 to 1,021,352
_RS20645
ABZR87_RS20650: ABZR87_RS20650 - aspartate dehydrogenase, at 1,021,369 to 1,022,172
_RS20650
ABZR87_RS20655: ABZR87_RS20655 - thiamine pyrophosphate-binding protein, at 1,022,205 to 1,023,932
_RS20655
Position (kb)
1021
1022
1023 Strain fitness (log2 ratio)
-1
0
1 at 1020.439 kb on + strand, within ABZR87_RS20645 at 1020.440 kb on - strand, within ABZR87_RS20645 at 1020.508 kb on + strand, within ABZR87_RS20645 at 1020.684 kb on - strand, within ABZR87_RS20645 at 1021.174 kb on + strand, within ABZR87_RS20645 at 1021.742 kb on + strand, within ABZR87_RS20650 at 1021.894 kb on + strand, within ABZR87_RS20650 at 1022.125 kb on + strand at 1022.125 kb on + strand at 1022.161 kb on + strand at 1022.161 kb on + strand at 1022.161 kb on + strand at 1022.161 kb on + strand at 1022.162 kb on - strand at 1022.162 kb on - strand at 1022.162 kb on - strand at 1022.169 kb on - strand at 1022.434 kb on + strand, within ABZR87_RS20655 at 1022.706 kb on + strand, within ABZR87_RS20655 at 1022.707 kb on - strand, within ABZR87_RS20655 at 1022.707 kb on - strand, within ABZR87_RS20655 at 1022.707 kb on - strand, within ABZR87_RS20655 at 1022.980 kb on + strand, within ABZR87_RS20655 at 1022.992 kb on + strand, within ABZR87_RS20655 at 1022.993 kb on - strand, within ABZR87_RS20655 at 1023.026 kb on + strand, within ABZR87_RS20655 at 1023.031 kb on + strand, within ABZR87_RS20655 at 1023.121 kb on + strand, within ABZR87_RS20655 at 1023.121 kb on + strand, within ABZR87_RS20655
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 1,020,439 + ABZR87_RS20645 0.39 +0.2 1,020,440 - ABZR87_RS20645 0.39 +0.5 1,020,508 + ABZR87_RS20645 0.44 +0.5 1,020,684 - ABZR87_RS20645 0.55 +1.0 1,021,174 + ABZR87_RS20645 0.88 +0.3 1,021,742 + ABZR87_RS20650 0.46 -1.2 1,021,894 + ABZR87_RS20650 0.65 -0.4 1,022,125 + -0.3 1,022,125 + +0.6 1,022,161 + -0.4 1,022,161 + -0.4 1,022,161 + +0.8 1,022,161 + -0.4 1,022,162 - -0.0 1,022,162 - -0.1 1,022,162 - -0.0 1,022,169 - -0.7 1,022,434 + ABZR87_RS20655 0.13 -0.3 1,022,706 + ABZR87_RS20655 0.29 -0.3 1,022,707 - ABZR87_RS20655 0.29 -0.4 1,022,707 - ABZR87_RS20655 0.29 -0.1 1,022,707 - ABZR87_RS20655 0.29 +0.2 1,022,980 + ABZR87_RS20655 0.45 +0.6 1,022,992 + ABZR87_RS20655 0.46 +0.6 1,022,993 - ABZR87_RS20655 0.46 +0.1 1,023,026 + ABZR87_RS20655 0.48 +0.3 1,023,031 + ABZR87_RS20655 0.48 -0.4 1,023,121 + ABZR87_RS20655 0.53 +0.1 1,023,121 + ABZR87_RS20655 0.53 -0.1
Or see this region's nucleotide sequence