Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20215 and ABZR87_RS20220 overlap by 37 nucleotides ABZR87_RS20220 and ABZR87_RS20225 are separated by 78 nucleotides ABZR87_RS20225 and ABZR87_RS20230 are separated by 68 nucleotides
ABZR87_RS20215: ABZR87_RS20215 - type VI secretion system baseplate subunit TssG, at 922,696 to 923,787
_RS20215
ABZR87_RS20220: ABZR87_RS20220 - type VI secretion system baseplate subunit TssF, at 923,751 to 925,601
_RS20220
ABZR87_RS20225: ABZR87_RS20225 - type VI secretion system baseplate subunit TssE, at 925,680 to 926,153
_RS20225
ABZR87_RS20230: ABZR87_RS20230 - Hcp family type VI secretion system effector, at 926,222 to 926,725
_RS20230
Position (kb) 923
924
925
926 Strain fitness (log2 ratio) -2
-1
0
1 at 923.048 kb on + strand, within ABZR87_RS20215 at 923.049 kb on - strand, within ABZR87_RS20215 at 923.049 kb on - strand, within ABZR87_RS20215 at 923.114 kb on + strand, within ABZR87_RS20215 at 923.138 kb on + strand, within ABZR87_RS20215 at 923.177 kb on + strand, within ABZR87_RS20215 at 923.279 kb on + strand, within ABZR87_RS20215 at 923.279 kb on + strand, within ABZR87_RS20215 at 923.280 kb on - strand, within ABZR87_RS20215 at 923.280 kb on - strand, within ABZR87_RS20215 at 923.304 kb on - strand, within ABZR87_RS20215 at 923.321 kb on + strand, within ABZR87_RS20215 at 923.321 kb on + strand, within ABZR87_RS20215 at 923.339 kb on + strand, within ABZR87_RS20215 at 923.339 kb on + strand, within ABZR87_RS20215 at 923.339 kb on + strand, within ABZR87_RS20215 at 923.340 kb on - strand, within ABZR87_RS20215 at 923.430 kb on - strand, within ABZR87_RS20215 at 923.435 kb on + strand, within ABZR87_RS20215 at 923.752 kb on + strand at 923.854 kb on + strand at 923.854 kb on + strand at 923.854 kb on + strand at 923.854 kb on + strand at 923.854 kb on + strand at 923.855 kb on - strand at 923.855 kb on - strand at 923.855 kb on - strand at 923.855 kb on - strand at 923.855 kb on - strand at 924.001 kb on + strand, within ABZR87_RS20220 at 924.054 kb on + strand, within ABZR87_RS20220 at 924.237 kb on - strand, within ABZR87_RS20220 at 924.421 kb on + strand, within ABZR87_RS20220 at 924.421 kb on + strand, within ABZR87_RS20220 at 924.464 kb on - strand, within ABZR87_RS20220 at 924.464 kb on - strand, within ABZR87_RS20220 at 924.535 kb on + strand, within ABZR87_RS20220 at 924.535 kb on + strand, within ABZR87_RS20220 at 924.535 kb on + strand, within ABZR87_RS20220 at 924.536 kb on - strand, within ABZR87_RS20220 at 924.580 kb on + strand, within ABZR87_RS20220 at 924.593 kb on + strand, within ABZR87_RS20220 at 924.593 kb on + strand, within ABZR87_RS20220 at 924.593 kb on + strand, within ABZR87_RS20220 at 924.593 kb on + strand, within ABZR87_RS20220 at 924.594 kb on - strand, within ABZR87_RS20220 at 924.594 kb on - strand, within ABZR87_RS20220 at 924.968 kb on - strand, within ABZR87_RS20220 at 924.968 kb on - strand, within ABZR87_RS20220 at 925.036 kb on + strand, within ABZR87_RS20220 at 925.036 kb on + strand, within ABZR87_RS20220 at 925.037 kb on - strand, within ABZR87_RS20220 at 925.037 kb on - strand, within ABZR87_RS20220 at 925.090 kb on + strand, within ABZR87_RS20220 at 925.091 kb on - strand, within ABZR87_RS20220 at 925.091 kb on - strand, within ABZR87_RS20220 at 925.091 kb on - strand, within ABZR87_RS20220 at 925.091 kb on - strand, within ABZR87_RS20220 at 925.210 kb on + strand, within ABZR87_RS20220 at 925.357 kb on + strand, within ABZR87_RS20220 at 925.358 kb on - strand, within ABZR87_RS20220 at 925.358 kb on - strand, within ABZR87_RS20220 at 925.403 kb on - strand, within ABZR87_RS20220 at 925.579 kb on + strand at 925.579 kb on + strand at 925.580 kb on - strand at 925.580 kb on - strand at 925.580 kb on - strand at 925.580 kb on - strand at 925.580 kb on - strand at 925.894 kb on + strand, within ABZR87_RS20225 at 925.895 kb on - strand, within ABZR87_RS20225 at 925.895 kb on - strand, within ABZR87_RS20225 at 925.895 kb on - strand, within ABZR87_RS20225 at 925.895 kb on - strand, within ABZR87_RS20225 at 925.948 kb on + strand, within ABZR87_RS20225 at 925.949 kb on - strand, within ABZR87_RS20225 at 925.949 kb on - strand, within ABZR87_RS20225 at 926.153 kb on + strand at 926.153 kb on + strand at 926.153 kb on + strand at 926.153 kb on + strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.161 kb on + strand at 926.161 kb on + strand at 926.310 kb on + strand, within ABZR87_RS20230 at 926.310 kb on + strand, within ABZR87_RS20230 at 926.311 kb on - strand, within ABZR87_RS20230 at 926.332 kb on - strand, within ABZR87_RS20230 at 926.424 kb on + strand, within ABZR87_RS20230 at 926.424 kb on + strand, within ABZR87_RS20230 at 926.508 kb on + strand, within ABZR87_RS20230 at 926.508 kb on + strand, within ABZR87_RS20230 at 926.508 kb on + strand, within ABZR87_RS20230 at 926.509 kb on - strand, within ABZR87_RS20230
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 923,048 + ABZR87_RS20215 0.32 +0.3 923,049 - ABZR87_RS20215 0.32 +1.0 923,049 - ABZR87_RS20215 0.32 -0.1 923,114 + ABZR87_RS20215 0.38 -0.0 923,138 + ABZR87_RS20215 0.40 -0.2 923,177 + ABZR87_RS20215 0.44 +0.5 923,279 + ABZR87_RS20215 0.53 +0.7 923,279 + ABZR87_RS20215 0.53 -0.3 923,280 - ABZR87_RS20215 0.53 +0.3 923,280 - ABZR87_RS20215 0.53 +0.4 923,304 - ABZR87_RS20215 0.56 -0.9 923,321 + ABZR87_RS20215 0.57 +0.7 923,321 + ABZR87_RS20215 0.57 +0.3 923,339 + ABZR87_RS20215 0.59 +0.7 923,339 + ABZR87_RS20215 0.59 -0.5 923,339 + ABZR87_RS20215 0.59 -0.7 923,340 - ABZR87_RS20215 0.59 -0.3 923,430 - ABZR87_RS20215 0.67 -0.1 923,435 + ABZR87_RS20215 0.68 -0.3 923,752 + +0.4 923,854 + +0.4 923,854 + -0.2 923,854 + +0.4 923,854 + -1.5 923,854 + +0.3 923,855 - -0.2 923,855 - -0.3 923,855 - -1.9 923,855 - +0.4 923,855 - +0.2 924,001 + ABZR87_RS20220 0.14 +0.4 924,054 + ABZR87_RS20220 0.16 +0.8 924,237 - ABZR87_RS20220 0.26 +0.8 924,421 + ABZR87_RS20220 0.36 +0.3 924,421 + ABZR87_RS20220 0.36 -0.4 924,464 - ABZR87_RS20220 0.39 -0.0 924,464 - ABZR87_RS20220 0.39 +0.0 924,535 + ABZR87_RS20220 0.42 +0.0 924,535 + ABZR87_RS20220 0.42 -0.7 924,535 + ABZR87_RS20220 0.42 -0.3 924,536 - ABZR87_RS20220 0.42 -0.8 924,580 + ABZR87_RS20220 0.45 +0.6 924,593 + ABZR87_RS20220 0.45 -0.2 924,593 + ABZR87_RS20220 0.45 +0.8 924,593 + ABZR87_RS20220 0.45 +0.1 924,593 + ABZR87_RS20220 0.45 +0.4 924,594 - ABZR87_RS20220 0.46 +0.0 924,594 - ABZR87_RS20220 0.46 -0.0 924,968 - ABZR87_RS20220 0.66 +0.0 924,968 - ABZR87_RS20220 0.66 +0.5 925,036 + ABZR87_RS20220 0.69 +0.4 925,036 + ABZR87_RS20220 0.69 +0.0 925,037 - ABZR87_RS20220 0.69 +0.1 925,037 - ABZR87_RS20220 0.69 -0.6 925,090 + ABZR87_RS20220 0.72 +0.6 925,091 - ABZR87_RS20220 0.72 +0.1 925,091 - ABZR87_RS20220 0.72 -0.1 925,091 - ABZR87_RS20220 0.72 +0.3 925,091 - ABZR87_RS20220 0.72 -1.5 925,210 + ABZR87_RS20220 0.79 -1.2 925,357 + ABZR87_RS20220 0.87 -0.0 925,358 - ABZR87_RS20220 0.87 +0.6 925,358 - ABZR87_RS20220 0.87 +0.0 925,403 - ABZR87_RS20220 0.89 -0.8 925,579 + -0.0 925,579 + -0.2 925,580 - -0.8 925,580 - +0.1 925,580 - +0.8 925,580 - -1.8 925,580 - -0.6 925,894 + ABZR87_RS20225 0.45 +0.5 925,895 - ABZR87_RS20225 0.45 -0.5 925,895 - ABZR87_RS20225 0.45 -0.6 925,895 - ABZR87_RS20225 0.45 +0.2 925,895 - ABZR87_RS20225 0.45 -0.4 925,948 + ABZR87_RS20225 0.57 +0.2 925,949 - ABZR87_RS20225 0.57 -0.6 925,949 - ABZR87_RS20225 0.57 -0.0 926,153 + +0.6 926,153 + -0.0 926,153 + +0.3 926,153 + +0.1 926,154 - +0.0 926,154 - +0.2 926,154 - -0.2 926,154 - -0.1 926,154 - +1.3 926,154 - +0.5 926,161 + -0.2 926,161 + +0.0 926,310 + ABZR87_RS20230 0.17 +0.4 926,310 + ABZR87_RS20230 0.17 -0.2 926,311 - ABZR87_RS20230 0.18 +0.6 926,332 - ABZR87_RS20230 0.22 +0.2 926,424 + ABZR87_RS20230 0.40 +0.1 926,424 + ABZR87_RS20230 0.40 -2.5 926,508 + ABZR87_RS20230 0.57 -0.5 926,508 + ABZR87_RS20230 0.57 -0.1 926,508 + ABZR87_RS20230 0.57 +0.8 926,509 - ABZR87_RS20230 0.57 -0.1
Or see this region's nucleotide sequence