Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16990

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16980 and ABZR87_RS16985 are separated by 105 nucleotidesABZR87_RS16985 and ABZR87_RS16990 are separated by 83 nucleotidesABZR87_RS16990 and ABZR87_RS16995 are separated by 5 nucleotidesABZR87_RS16995 and ABZR87_RS17000 are separated by 74 nucleotides ABZR87_RS16980: ABZR87_RS16980 - GlxA family transcriptional regulator, at 162,769 to 163,704 _RS16980 ABZR87_RS16985: ABZR87_RS16985 - DJ-1/PfpI family protein, at 163,810 to 164,496 _RS16985 ABZR87_RS16990: ABZR87_RS16990 - 5'-methylthioadenosine/adenosylhomocysteine nucleosidase, at 164,580 to 165,371 _RS16990 ABZR87_RS16995: ABZR87_RS16995 - lysozyme inhibitor LprI family protein, at 165,377 to 165,832 _RS16995 ABZR87_RS17000: ABZR87_RS17000 - DJ-1/PfpI family protein, at 165,907 to 166,509 _RS17000 Position (kb) 164 165 166Strain fitness (log2 ratio) -2 -1 0 1at 163.599 kb on - strand, within ABZR87_RS16980at 163.599 kb on - strand, within ABZR87_RS16980at 163.846 kb on + strandat 163.846 kb on + strandat 163.847 kb on - strandat 163.996 kb on - strand, within ABZR87_RS16985at 163.996 kb on - strand, within ABZR87_RS16985at 164.104 kb on + strand, within ABZR87_RS16985at 164.104 kb on + strand, within ABZR87_RS16985at 164.105 kb on - strand, within ABZR87_RS16985at 164.105 kb on - strand, within ABZR87_RS16985at 164.360 kb on - strand, within ABZR87_RS16985at 164.360 kb on - strand, within ABZR87_RS16985at 164.548 kb on + strandat 164.548 kb on + strandat 164.548 kb on + strandat 164.548 kb on + strandat 164.548 kb on + strandat 164.549 kb on - strandat 164.549 kb on - strandat 164.549 kb on - strandat 164.549 kb on - strandat 164.827 kb on + strand, within ABZR87_RS16990at 164.828 kb on - strand, within ABZR87_RS16990at 164.828 kb on - strand, within ABZR87_RS16990at 165.321 kb on + strandat 165.321 kb on + strandat 165.378 kb on + strandat 165.378 kb on + strandat 165.379 kb on - strandat 165.399 kb on + strandat 165.399 kb on + strandat 165.400 kb on - strandat 165.483 kb on + strand, within ABZR87_RS16995at 165.484 kb on - strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.594 kb on + strand, within ABZR87_RS16995at 165.595 kb on - strand, within ABZR87_RS16995at 165.595 kb on - strand, within ABZR87_RS16995at 165.595 kb on - strand, within ABZR87_RS16995at 165.595 kb on - strand, within ABZR87_RS16995at 165.595 kb on - strand, within ABZR87_RS16995at 165.595 kb on - strand, within ABZR87_RS16995at 165.595 kb on - strand, within ABZR87_RS16995at 165.595 kb on - strand, within ABZR87_RS16995at 165.598 kb on + strand, within ABZR87_RS16995at 165.599 kb on - strand, within ABZR87_RS16995at 165.599 kb on - strand, within ABZR87_RS16995at 165.599 kb on - strand, within ABZR87_RS16995at 165.599 kb on - strand, within ABZR87_RS16995at 165.690 kb on + strand, within ABZR87_RS16995at 165.690 kb on + strand, within ABZR87_RS16995at 165.690 kb on + strand, within ABZR87_RS16995at 165.690 kb on + strand, within ABZR87_RS16995at 165.691 kb on - strand, within ABZR87_RS16995at 165.691 kb on - strand, within ABZR87_RS16995at 165.853 kb on - strandat 165.853 kb on - strandat 165.883 kb on - strandat 165.949 kb on + strandat 165.949 kb on + strandat 165.950 kb on - strandat 165.954 kb on - strandat 165.954 kb on - strandat 165.983 kb on + strand, within ABZR87_RS17000at 165.983 kb on + strand, within ABZR87_RS17000at 165.983 kb on + strand, within ABZR87_RS17000at 165.984 kb on - strand, within ABZR87_RS17000at 166.094 kb on + strand, within ABZR87_RS17000at 166.094 kb on + strand, within ABZR87_RS17000at 166.094 kb on + strand, within ABZR87_RS17000at 166.159 kb on - strand, within ABZR87_RS17000at 166.199 kb on - strand, within ABZR87_RS17000

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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163,599 - ABZR87_RS16980 0.89 +0.4
163,599 - ABZR87_RS16980 0.89 +1.0
163,846 + -0.4
163,846 + +0.3
163,847 - +0.2
163,996 - ABZR87_RS16985 0.27 +1.3
163,996 - ABZR87_RS16985 0.27 +0.3
164,104 + ABZR87_RS16985 0.43 -0.1
164,104 + ABZR87_RS16985 0.43 +0.2
164,105 - ABZR87_RS16985 0.43 -2.1
164,105 - ABZR87_RS16985 0.43 -0.2
164,360 - ABZR87_RS16985 0.80 -0.2
164,360 - ABZR87_RS16985 0.80 -0.4
164,548 + -0.0
164,548 + +0.1
164,548 + -1.2
164,548 + -0.6
164,548 + -1.0
164,549 - +1.2
164,549 - +0.1
164,549 - +0.5
164,549 - -0.5
164,827 + ABZR87_RS16990 0.31 -0.5
164,828 - ABZR87_RS16990 0.31 -0.9
164,828 - ABZR87_RS16990 0.31 -0.9
165,321 + +0.2
165,321 + -0.1
165,378 + +0.4
165,378 + -0.3
165,379 - -0.5
165,399 + -1.4
165,399 + -1.1
165,400 - +0.2
165,483 + ABZR87_RS16995 0.23 +0.2
165,484 - ABZR87_RS16995 0.23 +0.0
165,594 + ABZR87_RS16995 0.48 -0.2
165,594 + ABZR87_RS16995 0.48 +0.7
165,594 + ABZR87_RS16995 0.48 +0.7
165,594 + ABZR87_RS16995 0.48 +0.7
165,594 + ABZR87_RS16995 0.48 -0.1
165,594 + ABZR87_RS16995 0.48 +0.1
165,594 + ABZR87_RS16995 0.48 -0.5
165,594 + ABZR87_RS16995 0.48 -0.4
165,594 + ABZR87_RS16995 0.48 +0.5
165,595 - ABZR87_RS16995 0.48 +1.1
165,595 - ABZR87_RS16995 0.48 +0.1
165,595 - ABZR87_RS16995 0.48 +0.5
165,595 - ABZR87_RS16995 0.48 -0.6
165,595 - ABZR87_RS16995 0.48 +0.2
165,595 - ABZR87_RS16995 0.48 -1.5
165,595 - ABZR87_RS16995 0.48 +0.3
165,595 - ABZR87_RS16995 0.48 +0.2
165,598 + ABZR87_RS16995 0.48 +0.4
165,599 - ABZR87_RS16995 0.49 +0.6
165,599 - ABZR87_RS16995 0.49 +0.8
165,599 - ABZR87_RS16995 0.49 +0.3
165,599 - ABZR87_RS16995 0.49 +0.0
165,690 + ABZR87_RS16995 0.69 +0.1
165,690 + ABZR87_RS16995 0.69 +0.6
165,690 + ABZR87_RS16995 0.69 -0.1
165,690 + ABZR87_RS16995 0.69 +0.7
165,691 - ABZR87_RS16995 0.69 -0.0
165,691 - ABZR87_RS16995 0.69 +0.6
165,853 - -0.3
165,853 - +0.3
165,883 - -0.2
165,949 + +0.0
165,949 + -0.4
165,950 - +0.2
165,954 - +0.0
165,954 - +0.1
165,983 + ABZR87_RS17000 0.13 -0.4
165,983 + ABZR87_RS17000 0.13 -0.4
165,983 + ABZR87_RS17000 0.13 +0.2
165,984 - ABZR87_RS17000 0.13 -0.1
166,094 + ABZR87_RS17000 0.31 +0.3
166,094 + ABZR87_RS17000 0.31 +0.1
166,094 + ABZR87_RS17000 0.31 +0.3
166,159 - ABZR87_RS17000 0.42 +0.2
166,199 - ABZR87_RS17000 0.48 -0.2

Or see this region's nucleotide sequence