Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS24770

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRALBFv3_RS22775 and RALBFv3_RS24770 are separated by 114 nucleotidesRALBFv3_RS24770 and RALBFv3_RS22780 are separated by 14 nucleotidesRALBFv3_RS22780 and RALBFv3_RS24775 are separated by 7 nucleotidesRALBFv3_RS24775 and RALBFv3_RS22785 overlap by 22 nucleotides RALBFv3_RS22775: RALBFv3_RS22775 - hypothetical protein, at 1,882,041 to 1,882,694 _RS22775 RALBFv3_RS24770: RALBFv3_RS24770 - hypothetical protein, at 1,882,809 to 1,883,123 _RS24770 RALBFv3_RS22780: RALBFv3_RS22780 - metallophosphoesterase, at 1,883,138 to 1,883,878 _RS22780 RALBFv3_RS24775: RALBFv3_RS24775 - hypothetical protein, at 1,883,886 to 1,884,092 _RS24775 RALBFv3_RS22785: RALBFv3_RS22785 - hypothetical protein, at 1,884,071 to 1,884,442 _RS22785 Position (kb) 1882 1883 1884Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1881.913 kb on + strandat 1881.914 kb on - strandat 1881.914 kb on - strandat 1881.914 kb on - strandat 1881.914 kb on - strandat 1881.914 kb on - strandat 1881.959 kb on + strandat 1881.959 kb on + strandat 1882.012 kb on - strandat 1882.061 kb on + strandat 1882.061 kb on + strandat 1882.061 kb on + strandat 1882.062 kb on - strandat 1882.062 kb on - strandat 1882.062 kb on - strandat 1882.068 kb on + strandat 1882.068 kb on + strandat 1882.069 kb on - strandat 1882.069 kb on - strandat 1882.094 kb on + strandat 1882.095 kb on - strandat 1882.100 kb on - strandat 1882.176 kb on - strand, within RALBFv3_RS22775at 1882.176 kb on - strand, within RALBFv3_RS22775at 1882.202 kb on + strand, within RALBFv3_RS22775at 1882.203 kb on - strand, within RALBFv3_RS22775at 1882.203 kb on - strand, within RALBFv3_RS22775at 1882.204 kb on + strand, within RALBFv3_RS22775at 1882.204 kb on + strand, within RALBFv3_RS22775at 1882.204 kb on + strand, within RALBFv3_RS22775at 1882.205 kb on - strand, within RALBFv3_RS22775at 1882.205 kb on - strand, within RALBFv3_RS22775at 1882.205 kb on - strand, within RALBFv3_RS22775at 1882.213 kb on + strand, within RALBFv3_RS22775at 1882.214 kb on - strand, within RALBFv3_RS22775at 1882.214 kb on - strand, within RALBFv3_RS22775at 1882.217 kb on + strand, within RALBFv3_RS22775at 1882.218 kb on - strand, within RALBFv3_RS22775at 1882.218 kb on - strand, within RALBFv3_RS22775at 1882.218 kb on - strand, within RALBFv3_RS22775at 1882.218 kb on - strand, within RALBFv3_RS22775at 1882.249 kb on + strand, within RALBFv3_RS22775at 1882.249 kb on + strand, within RALBFv3_RS22775at 1882.250 kb on - strand, within RALBFv3_RS22775at 1882.250 kb on - strand, within RALBFv3_RS22775at 1882.279 kb on + strand, within RALBFv3_RS22775at 1882.280 kb on - strand, within RALBFv3_RS22775at 1882.280 kb on - strand, within RALBFv3_RS22775at 1882.280 kb on - strand, within RALBFv3_RS22775at 1882.290 kb on - strand, within RALBFv3_RS22775at 1882.490 kb on + strand, within RALBFv3_RS22775at 1882.491 kb on - strand, within RALBFv3_RS22775at 1882.491 kb on - strand, within RALBFv3_RS22775at 1882.497 kb on + strand, within RALBFv3_RS22775at 1882.498 kb on - strand, within RALBFv3_RS22775at 1882.498 kb on - strand, within RALBFv3_RS22775at 1882.611 kb on + strand, within RALBFv3_RS22775at 1882.611 kb on + strand, within RALBFv3_RS22775at 1882.611 kb on + strand, within RALBFv3_RS22775at 1882.611 kb on + strand, within RALBFv3_RS22775at 1882.612 kb on - strand, within RALBFv3_RS22775at 1882.612 kb on - strand, within RALBFv3_RS22775at 1882.612 kb on - strand, within RALBFv3_RS22775at 1882.620 kb on - strand, within RALBFv3_RS22775at 1882.722 kb on - strandat 1882.725 kb on + strandat 1882.725 kb on + strandat 1882.728 kb on + strandat 1882.729 kb on - strandat 1882.729 kb on - strandat 1882.730 kb on + strandat 1882.730 kb on + strandat 1882.738 kb on - strandat 1882.799 kb on + strandat 1882.800 kb on - strandat 1882.800 kb on - strandat 1882.800 kb on - strandat 1882.900 kb on + strand, within RALBFv3_RS24770at 1882.900 kb on + strand, within RALBFv3_RS24770at 1882.901 kb on - strand, within RALBFv3_RS24770at 1882.932 kb on + strand, within RALBFv3_RS24770at 1882.932 kb on + strand, within RALBFv3_RS24770at 1882.933 kb on - strand, within RALBFv3_RS24770at 1882.933 kb on - strand, within RALBFv3_RS24770at 1882.960 kb on - strand, within RALBFv3_RS24770at 1883.022 kb on + strand, within RALBFv3_RS24770at 1883.023 kb on - strand, within RALBFv3_RS24770at 1883.023 kb on - strand, within RALBFv3_RS24770at 1883.039 kb on - strand, within RALBFv3_RS24770at 1883.039 kb on - strand, within RALBFv3_RS24770at 1883.039 kb on - strand, within RALBFv3_RS24770at 1883.039 kb on - strand, within RALBFv3_RS24770at 1883.289 kb on + strand, within RALBFv3_RS22780at 1883.378 kb on + strand, within RALBFv3_RS22780at 1883.378 kb on + strand, within RALBFv3_RS22780at 1883.379 kb on - strand, within RALBFv3_RS22780at 1883.441 kb on + strand, within RALBFv3_RS22780at 1883.441 kb on + strand, within RALBFv3_RS22780at 1883.441 kb on + strand, within RALBFv3_RS22780at 1883.441 kb on + strand, within RALBFv3_RS22780at 1883.441 kb on + strand, within RALBFv3_RS22780at 1883.442 kb on - strand, within RALBFv3_RS22780at 1883.442 kb on - strand, within RALBFv3_RS22780at 1883.495 kb on + strand, within RALBFv3_RS22780at 1883.495 kb on + strand, within RALBFv3_RS22780at 1883.495 kb on + strand, within RALBFv3_RS22780at 1883.496 kb on - strand, within RALBFv3_RS22780at 1883.496 kb on - strand, within RALBFv3_RS22780at 1883.641 kb on + strand, within RALBFv3_RS22780at 1883.642 kb on - strand, within RALBFv3_RS22780at 1883.675 kb on + strand, within RALBFv3_RS22780at 1883.675 kb on + strand, within RALBFv3_RS22780at 1883.676 kb on - strand, within RALBFv3_RS22780at 1883.676 kb on - strand, within RALBFv3_RS22780at 1883.733 kb on - strand, within RALBFv3_RS22780at 1883.733 kb on - strand, within RALBFv3_RS22780at 1883.789 kb on + strand, within RALBFv3_RS22780at 1883.789 kb on + strand, within RALBFv3_RS22780at 1884.019 kb on - strand, within RALBFv3_RS24775at 1884.019 kb on - strand, within RALBFv3_RS24775at 1884.019 kb on - strand, within RALBFv3_RS24775at 1884.019 kb on - strand, within RALBFv3_RS24775at 1884.019 kb on - strand, within RALBFv3_RS24775at 1884.110 kb on + strand, within RALBFv3_RS22785at 1884.110 kb on + strand, within RALBFv3_RS22785

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
remove
1,881,913 + -0.3
1,881,914 - -0.2
1,881,914 - -0.8
1,881,914 - +0.1
1,881,914 - -1.6
1,881,914 - -0.3
1,881,959 + -1.8
1,881,959 + -0.5
1,882,012 - -0.5
1,882,061 + +0.1
1,882,061 + -0.9
1,882,061 + -0.5
1,882,062 - -0.8
1,882,062 - -0.4
1,882,062 - -0.4
1,882,068 + -0.1
1,882,068 + -0.9
1,882,069 - -0.0
1,882,069 - +0.4
1,882,094 + -1.9
1,882,095 - -0.4
1,882,100 - -0.2
1,882,176 - RALBFv3_RS22775 0.21 -2.0
1,882,176 - RALBFv3_RS22775 0.21 +0.3
1,882,202 + RALBFv3_RS22775 0.25 -2.7
1,882,203 - RALBFv3_RS22775 0.25 +0.8
1,882,203 - RALBFv3_RS22775 0.25 -0.9
1,882,204 + RALBFv3_RS22775 0.25 -2.0
1,882,204 + RALBFv3_RS22775 0.25 -0.9
1,882,204 + RALBFv3_RS22775 0.25 -1.8
1,882,205 - RALBFv3_RS22775 0.25 -0.4
1,882,205 - RALBFv3_RS22775 0.25 -0.9
1,882,205 - RALBFv3_RS22775 0.25 +0.1
1,882,213 + RALBFv3_RS22775 0.26 -1.4
1,882,214 - RALBFv3_RS22775 0.26 +0.8
1,882,214 - RALBFv3_RS22775 0.26 -0.8
1,882,217 + RALBFv3_RS22775 0.27 -0.9
1,882,218 - RALBFv3_RS22775 0.27 -0.6
1,882,218 - RALBFv3_RS22775 0.27 -0.8
1,882,218 - RALBFv3_RS22775 0.27 -0.5
1,882,218 - RALBFv3_RS22775 0.27 -0.6
1,882,249 + RALBFv3_RS22775 0.32 -1.2
1,882,249 + RALBFv3_RS22775 0.32 -0.2
1,882,250 - RALBFv3_RS22775 0.32 -0.3
1,882,250 - RALBFv3_RS22775 0.32 +0.8
1,882,279 + RALBFv3_RS22775 0.36 -0.9
1,882,280 - RALBFv3_RS22775 0.37 +0.8
1,882,280 - RALBFv3_RS22775 0.37 -1.7
1,882,280 - RALBFv3_RS22775 0.37 +0.3
1,882,290 - RALBFv3_RS22775 0.38 -0.5
1,882,490 + RALBFv3_RS22775 0.69 -1.2
1,882,491 - RALBFv3_RS22775 0.69 -0.6
1,882,491 - RALBFv3_RS22775 0.69 -0.8
1,882,497 + RALBFv3_RS22775 0.70 -2.3
1,882,498 - RALBFv3_RS22775 0.70 -1.4
1,882,498 - RALBFv3_RS22775 0.70 -1.2
1,882,611 + RALBFv3_RS22775 0.87 -1.8
1,882,611 + RALBFv3_RS22775 0.87 -2.0
1,882,611 + RALBFv3_RS22775 0.87 -2.3
1,882,611 + RALBFv3_RS22775 0.87 -0.6
1,882,612 - RALBFv3_RS22775 0.87 +0.8
1,882,612 - RALBFv3_RS22775 0.87 -0.3
1,882,612 - RALBFv3_RS22775 0.87 -0.5
1,882,620 - RALBFv3_RS22775 0.89 -0.9
1,882,722 - -0.0
1,882,725 + -1.2
1,882,725 + -2.0
1,882,728 + -2.1
1,882,729 - -1.4
1,882,729 - -0.8
1,882,730 + -1.5
1,882,730 + -1.8
1,882,738 - +1.0
1,882,799 + -1.8
1,882,800 - -0.1
1,882,800 - -0.6
1,882,800 - +0.3
1,882,900 + RALBFv3_RS24770 0.29 -1.4
1,882,900 + RALBFv3_RS24770 0.29 -0.8
1,882,901 - RALBFv3_RS24770 0.29 +0.5
1,882,932 + RALBFv3_RS24770 0.39 -2.9
1,882,932 + RALBFv3_RS24770 0.39 -2.0
1,882,933 - RALBFv3_RS24770 0.39 -0.3
1,882,933 - RALBFv3_RS24770 0.39 +0.8
1,882,960 - RALBFv3_RS24770 0.48 -0.9
1,883,022 + RALBFv3_RS24770 0.68 -1.9
1,883,023 - RALBFv3_RS24770 0.68 +0.3
1,883,023 - RALBFv3_RS24770 0.68 -0.5
1,883,039 - RALBFv3_RS24770 0.73 +0.5
1,883,039 - RALBFv3_RS24770 0.73 -0.3
1,883,039 - RALBFv3_RS24770 0.73 +2.4
1,883,039 - RALBFv3_RS24770 0.73 +0.8
1,883,289 + RALBFv3_RS22780 0.20 -1.1
1,883,378 + RALBFv3_RS22780 0.32 -1.6
1,883,378 + RALBFv3_RS22780 0.32 -1.5
1,883,379 - RALBFv3_RS22780 0.33 -0.7
1,883,441 + RALBFv3_RS22780 0.41 -2.5
1,883,441 + RALBFv3_RS22780 0.41 -1.5
1,883,441 + RALBFv3_RS22780 0.41 -0.7
1,883,441 + RALBFv3_RS22780 0.41 -3.0
1,883,441 + RALBFv3_RS22780 0.41 -1.6
1,883,442 - RALBFv3_RS22780 0.41 -0.4
1,883,442 - RALBFv3_RS22780 0.41 +0.0
1,883,495 + RALBFv3_RS22780 0.48 -1.7
1,883,495 + RALBFv3_RS22780 0.48 +0.8
1,883,495 + RALBFv3_RS22780 0.48 -2.4
1,883,496 - RALBFv3_RS22780 0.48 +0.8
1,883,496 - RALBFv3_RS22780 0.48 -0.0
1,883,641 + RALBFv3_RS22780 0.68 -2.0
1,883,642 - RALBFv3_RS22780 0.68 -1.8
1,883,675 + RALBFv3_RS22780 0.72 -1.5
1,883,675 + RALBFv3_RS22780 0.72 -1.8
1,883,676 - RALBFv3_RS22780 0.73 -0.7
1,883,676 - RALBFv3_RS22780 0.73 +0.6
1,883,733 - RALBFv3_RS22780 0.80 -0.3
1,883,733 - RALBFv3_RS22780 0.80 +0.8
1,883,789 + RALBFv3_RS22780 0.88 -1.0
1,883,789 + RALBFv3_RS22780 0.88 -3.5
1,884,019 - RALBFv3_RS24775 0.64 +0.3
1,884,019 - RALBFv3_RS24775 0.64 -0.7
1,884,019 - RALBFv3_RS24775 0.64 -0.2
1,884,019 - RALBFv3_RS24775 0.64 +0.2
1,884,019 - RALBFv3_RS24775 0.64 -0.8
1,884,110 + RALBFv3_RS22785 0.10 -3.5
1,884,110 + RALBFv3_RS22785 0.10 -3.7

Or see this region's nucleotide sequence