Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS24305

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRALBFv3_RS17950 and RALBFv3_RS24305 are separated by 568 nucleotidesRALBFv3_RS24305 and RALBFv3_RS17955 are separated by 549 nucleotides RALBFv3_RS17950: RALBFv3_RS17950 - hypothetical protein, at 531,413 to 532,864 _RS17950 RALBFv3_RS24305: RALBFv3_RS24305 - hypothetical protein, at 533,433 to 533,636 _RS24305 RALBFv3_RS17955: RALBFv3_RS17955 - alpha/beta hydrolase, at 534,186 to 535,004 _RS17955 Position (kb) 533 534Strain fitness (log2 ratio) -2 -1 0 1 2at 532.485 kb on + strand, within RALBFv3_RS17950at 532.486 kb on - strand, within RALBFv3_RS17950at 532.486 kb on - strand, within RALBFv3_RS17950at 532.486 kb on - strand, within RALBFv3_RS17950at 532.486 kb on - strand, within RALBFv3_RS17950at 532.486 kb on - strand, within RALBFv3_RS17950at 532.505 kb on - strand, within RALBFv3_RS17950at 532.570 kb on + strand, within RALBFv3_RS17950at 532.570 kb on + strand, within RALBFv3_RS17950at 532.571 kb on - strand, within RALBFv3_RS17950at 532.571 kb on - strand, within RALBFv3_RS17950at 532.634 kb on + strand, within RALBFv3_RS17950at 532.658 kb on + strand, within RALBFv3_RS17950at 532.675 kb on - strand, within RALBFv3_RS17950at 532.675 kb on - strand, within RALBFv3_RS17950at 532.675 kb on - strand, within RALBFv3_RS17950at 532.724 kb on + strandat 532.728 kb on + strandat 532.728 kb on + strandat 532.728 kb on + strandat 532.728 kb on + strandat 532.729 kb on - strandat 532.729 kb on - strandat 532.729 kb on - strandat 532.868 kb on + strandat 532.868 kb on + strandat 532.904 kb on + strandat 532.904 kb on + strandat 532.904 kb on + strandat 532.904 kb on + strandat 532.905 kb on - strandat 532.905 kb on - strandat 532.905 kb on - strandat 533.047 kb on - strandat 533.181 kb on - strandat 533.279 kb on + strandat 533.611 kb on - strand, within RALBFv3_RS24305at 533.678 kb on + strandat 533.678 kb on + strandat 533.679 kb on - strandat 533.783 kb on + strandat 533.783 kb on + strandat 533.783 kb on + strandat 533.784 kb on - strandat 533.784 kb on - strandat 533.784 kb on - strandat 533.784 kb on - strandat 533.784 kb on - strandat 533.785 kb on + strandat 533.785 kb on + strandat 533.785 kb on + strandat 533.786 kb on - strandat 533.885 kb on + strandat 533.885 kb on + strandat 533.885 kb on + strandat 533.885 kb on + strandat 533.885 kb on + strandat 533.885 kb on + strandat 533.886 kb on - strandat 533.886 kb on - strandat 533.886 kb on - strandat 533.905 kb on + strandat 533.905 kb on + strandat 533.906 kb on - strandat 533.906 kb on - strandat 533.906 kb on - strandat 533.942 kb on - strandat 533.942 kb on - strandat 533.955 kb on + strandat 533.955 kb on + strandat 533.955 kb on + strandat 533.955 kb on + strandat 533.956 kb on - strandat 533.956 kb on - strandat 533.956 kb on - strandat 533.956 kb on - strandat 534.250 kb on + strandat 534.250 kb on + strandat 534.250 kb on + strandat 534.251 kb on - strandat 534.251 kb on - strandat 534.251 kb on - strandat 534.251 kb on - strandat 534.251 kb on - strandat 534.251 kb on - strandat 534.251 kb on - strandat 534.319 kb on + strand, within RALBFv3_RS17955at 534.346 kb on + strand, within RALBFv3_RS17955at 534.346 kb on + strand, within RALBFv3_RS17955at 534.346 kb on + strand, within RALBFv3_RS17955at 534.346 kb on + strand, within RALBFv3_RS17955at 534.346 kb on + strand, within RALBFv3_RS17955at 534.346 kb on + strand, within RALBFv3_RS17955at 534.346 kb on + strand, within RALBFv3_RS17955at 534.347 kb on - strand, within RALBFv3_RS17955at 534.347 kb on - strand, within RALBFv3_RS17955at 534.347 kb on - strand, within RALBFv3_RS17955at 534.347 kb on - strand, within RALBFv3_RS17955at 534.347 kb on - strand, within RALBFv3_RS17955at 534.347 kb on - strand, within RALBFv3_RS17955at 534.347 kb on - strand, within RALBFv3_RS17955at 534.347 kb on - strand, within RALBFv3_RS17955at 534.478 kb on + strand, within RALBFv3_RS17955at 534.478 kb on + strand, within RALBFv3_RS17955at 534.479 kb on - strand, within RALBFv3_RS17955at 534.479 kb on - strand, within RALBFv3_RS17955

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
remove
532,485 + RALBFv3_RS17950 0.74 +0.4
532,486 - RALBFv3_RS17950 0.74 +0.2
532,486 - RALBFv3_RS17950 0.74 +0.8
532,486 - RALBFv3_RS17950 0.74 -0.2
532,486 - RALBFv3_RS17950 0.74 -0.3
532,486 - RALBFv3_RS17950 0.74 -0.6
532,505 - RALBFv3_RS17950 0.75 -2.0
532,570 + RALBFv3_RS17950 0.80 -0.2
532,570 + RALBFv3_RS17950 0.80 +0.1
532,571 - RALBFv3_RS17950 0.80 -0.1
532,571 - RALBFv3_RS17950 0.80 -0.1
532,634 + RALBFv3_RS17950 0.84 +1.8
532,658 + RALBFv3_RS17950 0.86 -0.3
532,675 - RALBFv3_RS17950 0.87 +1.1
532,675 - RALBFv3_RS17950 0.87 -0.7
532,675 - RALBFv3_RS17950 0.87 -0.2
532,724 + -1.5
532,728 + +0.8
532,728 + -0.7
532,728 + +0.3
532,728 + +0.4
532,729 - -0.3
532,729 - -0.2
532,729 - +0.2
532,868 + -0.4
532,868 + -0.2
532,904 + -0.1
532,904 + +1.1
532,904 + +0.3
532,904 + +0.2
532,905 - -0.2
532,905 - -0.2
532,905 - -0.2
533,047 - +0.8
533,181 - +0.0
533,279 + -0.3
533,611 - RALBFv3_RS24305 0.87 -0.8
533,678 + -0.3
533,678 + -0.1
533,679 - +0.2
533,783 + -0.3
533,783 + -0.2
533,783 + -0.6
533,784 - -0.6
533,784 - +0.6
533,784 - -0.0
533,784 - +0.5
533,784 - +0.4
533,785 + +0.2
533,785 + -0.7
533,785 + -0.2
533,786 - -0.5
533,885 + -0.6
533,885 + -0.4
533,885 + -0.2
533,885 + -0.2
533,885 + -0.4
533,885 + -0.1
533,886 - +0.0
533,886 - -0.8
533,886 - +0.1
533,905 + -0.5
533,905 + +0.3
533,906 - -0.5
533,906 - +0.2
533,906 - -0.2
533,942 - +0.5
533,942 - +0.8
533,955 + -0.7
533,955 + +0.1
533,955 + +0.8
533,955 + +0.2
533,956 - -0.0
533,956 - +0.3
533,956 - -0.2
533,956 - -0.1
534,250 + +2.2
534,250 + -0.6
534,250 + +0.3
534,251 - -0.3
534,251 - +1.0
534,251 - -0.7
534,251 - -1.5
534,251 - -0.5
534,251 - +0.2
534,251 - +0.4
534,319 + RALBFv3_RS17955 0.16 +0.2
534,346 + RALBFv3_RS17955 0.20 +0.1
534,346 + RALBFv3_RS17955 0.20 +0.8
534,346 + RALBFv3_RS17955 0.20 -0.4
534,346 + RALBFv3_RS17955 0.20 -0.7
534,346 + RALBFv3_RS17955 0.20 -0.8
534,346 + RALBFv3_RS17955 0.20 +0.8
534,346 + RALBFv3_RS17955 0.20 -0.2
534,347 - RALBFv3_RS17955 0.20 +0.8
534,347 - RALBFv3_RS17955 0.20 -0.1
534,347 - RALBFv3_RS17955 0.20 +0.1
534,347 - RALBFv3_RS17955 0.20 -0.3
534,347 - RALBFv3_RS17955 0.20 +0.3
534,347 - RALBFv3_RS17955 0.20 +0.2
534,347 - RALBFv3_RS17955 0.20 +0.3
534,347 - RALBFv3_RS17955 0.20 +0.5
534,478 + RALBFv3_RS17955 0.36 -0.3
534,478 + RALBFv3_RS17955 0.36 +0.8
534,479 - RALBFv3_RS17955 0.36 -1.7
534,479 - RALBFv3_RS17955 0.36 -0.2

Or see this region's nucleotide sequence