Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS18295

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS18290 and RALBFv3_RS18295 are separated by 104 nucleotidesRALBFv3_RS18295 and RALBFv3_RS18300 are separated by 94 nucleotides RALBFv3_RS18290: RALBFv3_RS18290 - bifunctional diguanylate cyclase/phosphodiesterase, at 628,147 to 630,891 _RS18290 RALBFv3_RS18295: RALBFv3_RS18295 - hypothetical protein, at 630,996 to 631,490 _RS18295 RALBFv3_RS18300: RALBFv3_RS18300 - molybdenum-dependent transcriptional regulator, at 631,585 to 632,394 _RS18300 Position (kb) 630 631 632Strain fitness (log2 ratio) -1 0 1at 630.152 kb on - strand, within RALBFv3_RS18290at 630.578 kb on - strand, within RALBFv3_RS18290at 630.593 kb on - strand, within RALBFv3_RS18290at 630.796 kb on + strandat 630.797 kb on - strandat 630.799 kb on + strandat 630.800 kb on - strandat 630.800 kb on - strandat 630.966 kb on + strandat 630.966 kb on + strandat 630.966 kb on + strandat 630.966 kb on + strandat 630.966 kb on + strandat 630.967 kb on - strandat 631.025 kb on + strandat 631.026 kb on - strandat 631.026 kb on - strandat 631.336 kb on - strand, within RALBFv3_RS18295at 631.336 kb on - strand, within RALBFv3_RS18295

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
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630,152 - RALBFv3_RS18290 0.73 +0.3
630,578 - RALBFv3_RS18290 0.89 +0.5
630,593 - RALBFv3_RS18290 0.89 -0.1
630,796 + -0.5
630,797 - +0.1
630,799 + +0.1
630,800 - -0.3
630,800 - +0.3
630,966 + -0.5
630,966 + -1.1
630,966 + -0.3
630,966 + -1.1
630,966 + -0.2
630,967 - +0.3
631,025 + +0.0
631,026 - -0.4
631,026 - -0.0
631,336 - RALBFv3_RS18295 0.69 +0.3
631,336 - RALBFv3_RS18295 0.69 +0.4

Or see this region's nucleotide sequence