Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS15590

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS15585 and RALBFv3_RS15590 are separated by 72 nucleotidesRALBFv3_RS15590 and RALBFv3_RS15595 are separated by 91 nucleotides RALBFv3_RS15585: RALBFv3_RS15585 - dihydrolipoyllysine-residue succinyltransferase, at 3,396,815 to 3,398,068 _RS15585 RALBFv3_RS15590: RALBFv3_RS15590 - dihydrolipoyl dehydrogenase, at 3,398,141 to 3,399,577 _RS15590 RALBFv3_RS15595: RALBFv3_RS15595 - cell division protein ZapE, at 3,399,669 to 3,400,766 _RS15595 Position (kb) 3398 3399 3400Strain fitness (log2 ratio) -1 0 1at 3398.066 kb on + strandat 3399.575 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
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3,398,066 + -0.3
3,399,575 + +1.2

Or see this region's nucleotide sequence