Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS15310

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS15305 and RALBFv3_RS15310 are separated by 56 nucleotidesRALBFv3_RS15310 and RALBFv3_RS15315 are separated by 15 nucleotides RALBFv3_RS15305: RALBFv3_RS15305 - GTPase HflX, at 3,332,349 to 3,333,602 _RS15305 RALBFv3_RS15310: RALBFv3_RS15310 - FtsH protease activity modulator HflK, at 3,333,659 to 3,335,038 _RS15310 RALBFv3_RS15315: RALBFv3_RS15315 - protease modulator HflC, at 3,335,054 to 3,335,968 _RS15315 Position (kb) 3333 3334 3335 3336Strain fitness (log2 ratio) -1 0 1at 3333.604 kb on - strandat 3334.301 kb on + strand, within RALBFv3_RS15310at 3334.598 kb on + strand, within RALBFv3_RS15310at 3335.357 kb on + strand, within RALBFv3_RS15315at 3335.970 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
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3,333,604 - +0.6
3,334,301 + RALBFv3_RS15310 0.47 -0.9
3,334,598 + RALBFv3_RS15310 0.68 -0.7
3,335,357 + RALBFv3_RS15315 0.33 -0.0
3,335,970 - +0.2

Or see this region's nucleotide sequence