Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS12045

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
2,655,771	+				+0.1
2,655,863	+				-1.4
2,655,988	+				-1.0
2,655,988	+				-0.4
2,655,989	-				-0.0
2,655,989	-				+0.0
2,655,989	-				-0.5
2,655,989	-				-0.7
2,656,029	+		RALBFv3_RS12040	0.17	-0.5
2,656,030	-		RALBFv3_RS12040	0.17	-0.5
2,656,064	+		RALBFv3_RS12040	0.24	-0.7
2,656,064	+		RALBFv3_RS12040	0.24	+0.2
2,656,064	+		RALBFv3_RS12040	0.24	+0.4
2,656,064	+		RALBFv3_RS12040	0.24	-0.7
2,656,065	-		RALBFv3_RS12040	0.24	-0.4
2,656,065	-		RALBFv3_RS12040	0.24	+0.4
2,656,065	-		RALBFv3_RS12040	0.24	+1.0
2,656,211	-		RALBFv3_RS12040	0.52	+0.3
2,656,222	+		RALBFv3_RS12040	0.54	-1.3
2,656,222	+		RALBFv3_RS12040	0.54	-1.0
2,656,223	-		RALBFv3_RS12040	0.54	+1.0
2,656,235	-		RALBFv3_RS12040	0.56	-1.1
2,656,244	+		RALBFv3_RS12040	0.58	-0.3
2,656,244	+		RALBFv3_RS12040	0.58	+0.1
2,656,244	+		RALBFv3_RS12040	0.58	-0.7
2,656,244	+		RALBFv3_RS12040	0.58	-0.4
2,656,245	-		RALBFv3_RS12040	0.58	-0.3
2,656,245	-		RALBFv3_RS12040	0.58	-0.1
2,656,245	-		RALBFv3_RS12040	0.58	+0.9
2,656,245	-		RALBFv3_RS12040	0.58	+0.5
2,656,245	-		RALBFv3_RS12040	0.58	+0.0
2,656,295	+		RALBFv3_RS12040	0.68	-0.2
2,656,296	-		RALBFv3_RS12040	0.68	-1.0
2,656,321	+		RALBFv3_RS12040	0.73	-0.4
2,656,321	+		RALBFv3_RS12040	0.73	-0.6
2,656,321	+		RALBFv3_RS12040	0.73	-0.3
2,656,321	+		RALBFv3_RS12040	0.73	-0.3
2,656,321	+		RALBFv3_RS12040	0.73	+1.0
2,656,322	-		RALBFv3_RS12040	0.73	-0.3
2,656,322	-		RALBFv3_RS12040	0.73	-0.2
2,656,322	-		RALBFv3_RS12040	0.73	-0.2
2,656,322	-		RALBFv3_RS12040	0.73	-0.2
2,656,423	+				-0.8
2,656,424	-				-0.3
2,656,424	-				-1.3
2,656,439	+				+1.0
2,656,439	+				-0.1
2,656,439	+				-0.5
2,656,439	+				+0.6
2,656,439	+				-0.3
2,656,440	-				-0.5
2,656,440	-				-0.9
2,656,547	+				+0.3
2,656,547	+				-0.4
2,656,547	+				+0.6
2,656,547	+				-0.4
2,656,547	+				+0.0
2,656,547	+				+1.0
2,656,547	+				-0.3
2,656,547	+				+0.6
2,656,548	-				+1.0
2,656,548	-				-1.4
2,656,548	-				+0.9
2,656,548	-				-0.4
2,656,548	-				+0.0
2,656,548	-				+1.0
2,656,548	-				-0.8
2,656,548	-				-0.7
2,656,548	-				+0.2
2,656,548	-				-1.1
2,656,557	-				-0.9
2,656,557	-				-0.0
2,656,566	+				+0.5
2,656,566	+				-0.2
2,656,566	+				+0.0
2,656,566	+				-0.2
2,656,566	+				-0.9
2,656,566	+				+0.4
2,656,567	-				-0.5
2,656,567	-				-0.0
2,656,567	-				+0.1
2,656,567	-				-2.2
2,656,567	-				-0.3
2,656,568	+				+0.2
2,656,568	+				-0.2
2,656,568	+				+0.1
2,656,620	-				-1.2
2,656,620	-				-1.4
2,656,685	+				-0.9
2,656,685	+				-1.1
2,656,685	+				-1.2
2,656,686	-				-0.8
2,656,686	-				-1.7
2,656,686	-				-1.4
2,656,705	+				+0.2
2,656,706	-				-1.0
2,656,813	+		RALBFv3_RS12045	0.16	-1.0
2,656,850	+		RALBFv3_RS12045	0.24	-0.8
2,656,851	-		RALBFv3_RS12045	0.24	-1.0
2,656,851	-		RALBFv3_RS12045	0.24	-1.6
2,656,996	+		RALBFv3_RS12045	0.52	-0.3
2,656,996	+		RALBFv3_RS12045	0.52	-0.9
2,656,996	+		RALBFv3_RS12045	0.52	-1.5
2,656,996	+		RALBFv3_RS12045	0.52	-0.8
2,656,996	+		RALBFv3_RS12045	0.52	-1.2
2,656,997	-		RALBFv3_RS12045	0.53	+1.0
2,656,997	-		RALBFv3_RS12045	0.53	-1.6
2,656,997	-		RALBFv3_RS12045	0.53	-1.2
2,656,997	-		RALBFv3_RS12045	0.53	-0.9
2,656,997	-		RALBFv3_RS12045	0.53	-1.5
2,656,999	+		RALBFv3_RS12045	0.53	-1.6
2,656,999	+		RALBFv3_RS12045	0.53	-0.6
2,657,035	+		RALBFv3_RS12045	0.60	-0.5
2,657,035	+		RALBFv3_RS12045	0.60	-1.0
2,657,035	+		RALBFv3_RS12045	0.60	-0.8
2,657,035	+		RALBFv3_RS12045	0.60	-1.1
2,657,035	+		RALBFv3_RS12045	0.60	-1.2
2,657,036	-		RALBFv3_RS12045	0.60	-1.3
2,657,036	-		RALBFv3_RS12045	0.60	-1.9
2,657,036	-		RALBFv3_RS12045	0.60	-0.7
2,657,036	-		RALBFv3_RS12045	0.60	-0.9
2,657,036	-		RALBFv3_RS12045	0.60	-1.1
2,657,039	+		RALBFv3_RS12045	0.61	-1.0
2,657,039	+		RALBFv3_RS12045	0.61	-1.0
2,657,039	+		RALBFv3_RS12045	0.61	-1.0
2,657,039	+		RALBFv3_RS12045	0.61	-1.3
2,657,039	+		RALBFv3_RS12045	0.61	-1.1
2,657,039	+		RALBFv3_RS12045	0.61	-1.5
2,657,040	-		RALBFv3_RS12045	0.61	-1.2
2,657,040	-		RALBFv3_RS12045	0.61	-1.0
2,657,040	-		RALBFv3_RS12045	0.61	-1.2
2,657,040	-		RALBFv3_RS12045	0.61	+1.0
2,657,040	-		RALBFv3_RS12045	0.61	-0.4
2,657,063	-		RALBFv3_RS12045	0.66	-0.8
2,657,128	+		RALBFv3_RS12045	0.79	-1.0
2,657,128	+		RALBFv3_RS12045	0.79	+0.0
2,657,128	+		RALBFv3_RS12045	0.79	-0.7
2,657,128	+		RALBFv3_RS12045	0.79	-1.0
2,657,128	+		RALBFv3_RS12045	0.79	-1.0
2,657,128	+		RALBFv3_RS12045	0.79	-1.0
2,657,128	+		RALBFv3_RS12045	0.79	-0.7
2,657,128	+		RALBFv3_RS12045	0.79	-0.2
2,657,128	+		RALBFv3_RS12045	0.79	-1.2
2,657,129	-		RALBFv3_RS12045	0.79	-1.9
2,657,129	-		RALBFv3_RS12045	0.79	-1.0
2,657,129	-		RALBFv3_RS12045	0.79	+0.5
2,657,129	-		RALBFv3_RS12045	0.79	-0.4
2,657,144	+		RALBFv3_RS12045	0.82	-0.7
2,657,144	+		RALBFv3_RS12045	0.82	-1.3
2,657,145	-		RALBFv3_RS12045	0.82	-0.7
2,657,213	+				-0.7
2,657,213	+				-0.8
2,657,213	+				-0.9
2,657,213	+				-0.8
2,657,213	+				-0.3
2,657,213	+				-1.0
2,657,213	+				+0.1
2,657,213	+				-2.1
2,657,213	+				-0.5
2,657,214	-				-1.2
2,657,214	-				-0.7
2,657,214	-				-1.2
2,657,214	-				-1.2
2,657,235	-				-1.7
2,657,235	-				-0.5
2,657,263	+				-0.9
2,657,263	+				-0.6
2,657,264	-				-0.5
2,657,312	+				+0.0
2,657,333	+				-0.3
2,657,334	-				+1.0
2,657,334	-				-1.0
2,657,336	-				-1.1
2,657,388	+				-1.3
2,657,388	+				-1.5
2,657,388	+				-1.3
2,657,389	-				-2.0
2,657,389	-				-1.6
2,657,389	-				-1.4
2,657,410	+				-1.6
2,657,410	+				-1.9
2,657,410	+				-1.9
2,657,410	+				-1.9
2,657,410	+				-0.9
2,657,410	+				-1.2
2,657,410	+				-2.0
2,657,410	+				-1.0
2,657,410	+				+0.0
2,657,410	+				-1.4
2,657,411	-				-1.6
2,657,411	-				-1.6
2,657,411	-				-0.7
2,657,411	-				-0.7
2,657,414	+				-1.9
2,657,414	+				-2.1
2,657,414	+				-1.6
2,657,415	-				-0.8
2,657,432	+				-1.1
2,657,432	+				-2.2
2,657,433	-				-2.1
2,657,433	-				-1.4
2,657,475	+				-1.4
2,657,476	-				-1.1
2,657,481	+				-0.5
2,657,482	-				-1.3
2,657,482	-				-1.2
2,657,482	-				-0.9
2,657,500	+		RALBFv3_RS12050	0.10	-1.1
2,657,500	+		RALBFv3_RS12050	0.10	-0.8
2,657,501	-		RALBFv3_RS12050	0.10	-0.7
2,657,518	+		RALBFv3_RS12050	0.11	-1.3
2,657,518	+		RALBFv3_RS12050	0.11	-1.6
2,657,519	-		RALBFv3_RS12050	0.11	-0.9
2,657,519	-		RALBFv3_RS12050	0.11	-1.0
2,657,519	-		RALBFv3_RS12050	0.11	-2.1
2,657,529	+		RALBFv3_RS12050	0.12	-1.2
2,657,530	-		RALBFv3_RS12050	0.12	-1.8
2,657,530	-		RALBFv3_RS12050	0.12	-0.7
2,657,743	-		RALBFv3_RS12050	0.24	-1.4
2,657,743	-		RALBFv3_RS12050	0.24	+0.0
2,657,743	-		RALBFv3_RS12050	0.24	-1.1
2,657,743	-		RALBFv3_RS12050	0.24	-0.1
2,657,743	-		RALBFv3_RS12050	0.24	-1.6
2,657,743	-		RALBFv3_RS12050	0.24	-1.4
2,657,743	-		RALBFv3_RS12050	0.24	-1.1
2,657,844	+		RALBFv3_RS12050	0.30	-1.7
2,657,845	-		RALBFv3_RS12050	0.30	-1.2
2,657,852	+		RALBFv3_RS12050	0.31	-1.3
2,657,852	+		RALBFv3_RS12050	0.31	-1.7
2,657,853	-		RALBFv3_RS12050	0.31	-1.3
2,657,853	-		RALBFv3_RS12050	0.31	-0.8
2,657,853	-		RALBFv3_RS12050	0.31	-0.8
2,657,853	-		RALBFv3_RS12050	0.31	-2.5
2,657,853	-		RALBFv3_RS12050	0.31	-0.8
2,657,907	-		RALBFv3_RS12050	0.34	+1.0
2,657,908	+		RALBFv3_RS12050	0.34	-0.8
2,657,908	+		RALBFv3_RS12050	0.34	-0.4
2,657,908	+		RALBFv3_RS12050	0.34	-1.5
2,657,908	+		RALBFv3_RS12050	0.34	-0.8
2,657,908	+		RALBFv3_RS12050	0.34	-1.4
2,657,908	+		RALBFv3_RS12050	0.34	-0.8
2,657,909	-		RALBFv3_RS12050	0.34	-1.0
2,657,909	-		RALBFv3_RS12050	0.34	-2.0
2,657,946	+		RALBFv3_RS12050	0.36	+1.0
2,657,946	+		RALBFv3_RS12050	0.36	-1.9
2,657,947	-		RALBFv3_RS12050	0.36	-1.6
2,657,947	-		RALBFv3_RS12050	0.36	-1.1
2,657,947	-		RALBFv3_RS12050	0.36	+0.0
2,657,947	-		RALBFv3_RS12050	0.36	-0.6
2,657,947	-		RALBFv3_RS12050	0.36	-1.0
2,657,947	-		RALBFv3_RS12050	0.36	-1.8
2,658,072	+		RALBFv3_RS12050	0.43	-1.4
2,658,073	-		RALBFv3_RS12050	0.43	-1.8
2,658,092	+		RALBFv3_RS12050	0.44	-1.2
2,658,093	-		RALBFv3_RS12050	0.44	-1.5
2,658,093	-		RALBFv3_RS12050	0.44	+0.1
2,658,119	+		RALBFv3_RS12050	0.46	-1.4
2,658,119	+		RALBFv3_RS12050	0.46	-1.3
2,658,119	+		RALBFv3_RS12050	0.46	+1.0
2,658,119	+		RALBFv3_RS12050	0.46	-2.1
2,658,119	+		RALBFv3_RS12050	0.46	-0.9
2,658,120	-		RALBFv3_RS12050	0.46	-2.0
2,658,120	-		RALBFv3_RS12050	0.46	-0.4