Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS11930

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
2,628,390	-		RALBFv3_RS11925	0.15	+0.3
2,628,434	-		RALBFv3_RS11925	0.19	+1.0
2,628,471	+		RALBFv3_RS11925	0.22	-0.1
2,628,471	+		RALBFv3_RS11925	0.22	+0.0
2,628,493	+		RALBFv3_RS11925	0.24	+0.0
2,628,494	-		RALBFv3_RS11925	0.24	+0.3
2,628,494	-		RALBFv3_RS11925	0.24	-0.3
2,628,494	-		RALBFv3_RS11925	0.24	-0.7
2,628,494	-		RALBFv3_RS11925	0.24	-0.4
2,628,494	-		RALBFv3_RS11925	0.24	+0.1
2,628,520	+		RALBFv3_RS11925	0.27	+0.4
2,628,520	+		RALBFv3_RS11925	0.27	+0.5
2,628,564	+		RALBFv3_RS11925	0.31	-0.3
2,628,564	+		RALBFv3_RS11925	0.31	-0.1
2,628,564	+		RALBFv3_RS11925	0.31	-0.2
2,628,564	+		RALBFv3_RS11925	0.31	+0.4
2,628,564	+		RALBFv3_RS11925	0.31	+0.1
2,628,564	+		RALBFv3_RS11925	0.31	-0.9
2,628,564	+		RALBFv3_RS11925	0.31	+1.0
2,628,565	-		RALBFv3_RS11925	0.31	-2.0
2,628,565	-		RALBFv3_RS11925	0.31	+0.6
2,628,623	+		RALBFv3_RS11925	0.36	+1.6
2,628,645	-		RALBFv3_RS11925	0.38	-0.4
2,628,645	-		RALBFv3_RS11925	0.38	-0.1
2,628,645	-		RALBFv3_RS11925	0.38	-0.2
2,628,685	+		RALBFv3_RS11925	0.41	+0.6
2,628,720	+		RALBFv3_RS11925	0.44	+0.3
2,628,720	+		RALBFv3_RS11925	0.44	+0.2
2,628,720	+		RALBFv3_RS11925	0.44	-0.5
2,628,720	+		RALBFv3_RS11925	0.44	-0.7
2,628,721	-		RALBFv3_RS11925	0.44	-0.1
2,628,721	-		RALBFv3_RS11925	0.44	+0.0
2,628,735	+		RALBFv3_RS11925	0.46	-0.6
2,628,735	+		RALBFv3_RS11925	0.46	-0.7
2,628,736	-		RALBFv3_RS11925	0.46	-0.3
2,628,781	-		RALBFv3_RS11925	0.50	-0.9
2,628,847	+		RALBFv3_RS11925	0.55	-0.3
2,628,847	+		RALBFv3_RS11925	0.55	-0.3
2,628,847	+		RALBFv3_RS11925	0.55	+0.0
2,628,848	-		RALBFv3_RS11925	0.56	+0.9
2,628,848	-		RALBFv3_RS11925	0.56	+0.4
2,628,848	-		RALBFv3_RS11925	0.56	+0.2
2,628,848	-		RALBFv3_RS11925	0.56	+1.3
2,628,848	-		RALBFv3_RS11925	0.56	+0.1
2,628,848	-		RALBFv3_RS11925	0.56	+0.6
2,628,848	-		RALBFv3_RS11925	0.56	-0.3
2,628,848	-		RALBFv3_RS11925	0.56	-0.1
2,628,859	+		RALBFv3_RS11925	0.57	+1.0
2,628,860	-		RALBFv3_RS11925	0.57	-0.1
2,628,860	-		RALBFv3_RS11925	0.57	-0.4
2,628,860	-		RALBFv3_RS11925	0.57	-0.1
2,628,860	-		RALBFv3_RS11925	0.57	+0.0
2,628,860	-		RALBFv3_RS11925	0.57	-0.7
2,628,964	+		RALBFv3_RS11925	0.66	+0.1
2,628,965	-		RALBFv3_RS11925	0.66	+1.0
2,629,008	+		RALBFv3_RS11925	0.70	-0.1
2,629,008	+		RALBFv3_RS11925	0.70	+0.2
2,629,008	+		RALBFv3_RS11925	0.70	+0.4
2,629,009	-		RALBFv3_RS11925	0.70	-0.2
2,629,009	-		RALBFv3_RS11925	0.70	+0.1
2,629,009	-		RALBFv3_RS11925	0.70	-0.9
2,629,087	-		RALBFv3_RS11925	0.77	-0.4
2,629,088	+		RALBFv3_RS11925	0.77	+0.0
2,629,089	-		RALBFv3_RS11925	0.77	+0.3
2,629,089	-		RALBFv3_RS11925	0.77	+0.4
2,629,089	-		RALBFv3_RS11925	0.77	-0.8
2,629,089	-		RALBFv3_RS11925	0.77	-1.5
2,629,089	-		RALBFv3_RS11925	0.77	-0.5
2,629,132	+		RALBFv3_RS11925	0.81	-0.2
2,629,133	-		RALBFv3_RS11925	0.81	+0.4
2,629,133	-		RALBFv3_RS11925	0.81	-0.1
2,629,133	-		RALBFv3_RS11925	0.81	-0.4
2,629,169	+		RALBFv3_RS11925	0.84	+0.1
2,629,170	-		RALBFv3_RS11925	0.84	+2.2
2,629,170	-		RALBFv3_RS11925	0.84	+1.0
2,629,183	+		RALBFv3_RS11925	0.85	-0.1
2,629,184	-		RALBFv3_RS11925	0.85	-0.7
2,629,188	-		RALBFv3_RS11925	0.85	-1.3
2,629,199	-		RALBFv3_RS11925	0.86	+0.4
2,629,199	-		RALBFv3_RS11925	0.86	-0.2
2,629,420	+				-0.4
2,629,473	-				+0.0
2,629,487	+				+0.4
2,629,488	-				+0.3
2,629,545	-		RALBFv3_RS11930	0.11	+0.3
2,629,545	-		RALBFv3_RS11930	0.11	-0.2
2,629,545	-		RALBFv3_RS11930	0.11	+0.7
2,629,594	-		RALBFv3_RS11930	0.14	+0.1
2,629,667	+		RALBFv3_RS11930	0.19	-0.0
2,629,667	+		RALBFv3_RS11930	0.19	+0.0
2,629,667	+		RALBFv3_RS11930	0.19	+1.0
2,629,667	+		RALBFv3_RS11930	0.19	-0.3
2,629,667	+		RALBFv3_RS11930	0.19	+0.1
2,629,667	+		RALBFv3_RS11930	0.19	+1.0
2,629,667	+		RALBFv3_RS11930	0.19	+0.3
2,629,668	-		RALBFv3_RS11930	0.19	-0.3
2,629,668	-		RALBFv3_RS11930	0.19	+0.5
2,629,668	-		RALBFv3_RS11930	0.19	-0.8
2,629,668	-		RALBFv3_RS11930	0.19	-0.4
2,629,668	-		RALBFv3_RS11930	0.19	-0.5
2,629,668	-		RALBFv3_RS11930	0.19	-0.7
2,629,668	-		RALBFv3_RS11930	0.19	+0.2
2,629,727	+		RALBFv3_RS11930	0.22	+0.2
2,629,727	+		RALBFv3_RS11930	0.22	-0.3
2,629,727	+		RALBFv3_RS11930	0.22	+0.2
2,629,727	+		RALBFv3_RS11930	0.22	-0.1
2,629,727	+		RALBFv3_RS11930	0.22	-0.1
2,629,728	-		RALBFv3_RS11930	0.22	+0.2
2,629,728	-		RALBFv3_RS11930	0.22	+0.6
2,629,751	+		RALBFv3_RS11930	0.24	+0.3
2,629,752	-		RALBFv3_RS11930	0.24	+0.3
2,629,752	-		RALBFv3_RS11930	0.24	-0.5
2,629,766	-		RALBFv3_RS11930	0.24	+0.0
2,629,766	-		RALBFv3_RS11930	0.24	-0.6
2,629,766	-		RALBFv3_RS11930	0.24	-1.1
2,629,784	+		RALBFv3_RS11930	0.25	-0.3
2,629,784	+		RALBFv3_RS11930	0.25	-0.3
2,629,785	-		RALBFv3_RS11930	0.26	-0.4
2,629,785	-		RALBFv3_RS11930	0.26	+0.9
2,629,806	+		RALBFv3_RS11930	0.27	+0.3
2,629,806	+		RALBFv3_RS11930	0.27	+0.2
2,629,815	+		RALBFv3_RS11930	0.27	+0.3
2,629,816	-		RALBFv3_RS11930	0.27	-0.2
2,629,816	-		RALBFv3_RS11930	0.27	-1.0
2,629,850	+		RALBFv3_RS11930	0.29	-0.5
2,629,850	+		RALBFv3_RS11930	0.29	-0.2
2,629,850	+		RALBFv3_RS11930	0.29	-2.4
2,629,851	-		RALBFv3_RS11930	0.29	+0.3
2,629,851	-		RALBFv3_RS11930	0.29	+1.0
2,629,851	-		RALBFv3_RS11930	0.29	-0.5
2,629,851	-		RALBFv3_RS11930	0.29	-0.1
2,629,851	-		RALBFv3_RS11930	0.29	-0.5
2,629,851	-		RALBFv3_RS11930	0.29	-0.3
2,629,851	-		RALBFv3_RS11930	0.29	-0.1
2,629,851	-		RALBFv3_RS11930	0.29	+0.0
2,629,851	-		RALBFv3_RS11930	0.29	-0.2
2,629,851	-		RALBFv3_RS11930	0.29	-0.3
2,629,851	-		RALBFv3_RS11930	0.29	-0.3
2,629,912	+		RALBFv3_RS11930	0.33	+0.0
2,629,913	-		RALBFv3_RS11930	0.33	-0.4
2,629,926	+		RALBFv3_RS11930	0.34	-0.1
2,629,937	-		RALBFv3_RS11930	0.34	+0.1
2,629,947	+		RALBFv3_RS11930	0.35	+0.3
2,629,947	+		RALBFv3_RS11930	0.35	-0.2
2,629,947	+		RALBFv3_RS11930	0.35	+0.0
2,629,947	+		RALBFv3_RS11930	0.35	+0.9
2,629,973	+		RALBFv3_RS11930	0.37	+1.6
2,630,014	+		RALBFv3_RS11930	0.39	+1.5
2,630,015	-		RALBFv3_RS11930	0.39	-0.0
2,630,015	-		RALBFv3_RS11930	0.39	-0.3
2,630,015	-		RALBFv3_RS11930	0.39	-0.4
2,630,021	+		RALBFv3_RS11930	0.39	-0.1
2,630,022	-		RALBFv3_RS11930	0.39	+0.1
2,630,047	+		RALBFv3_RS11930	0.41	+0.1
2,630,048	-		RALBFv3_RS11930	0.41	+0.3
2,630,048	-		RALBFv3_RS11930	0.41	-2.1
2,630,048	-		RALBFv3_RS11930	0.41	+0.3
2,630,068	+		RALBFv3_RS11930	0.42	-0.2
2,630,068	+		RALBFv3_RS11930	0.42	-0.1
2,630,069	-		RALBFv3_RS11930	0.42	+0.8
2,630,085	-		RALBFv3_RS11930	0.43	+0.7
2,630,118	+		RALBFv3_RS11930	0.45	+1.0
2,630,182	-		RALBFv3_RS11930	0.49	+0.2
2,630,281	+		RALBFv3_RS11930	0.55	-0.5
2,630,282	-		RALBFv3_RS11930	0.55	+0.4
2,630,282	-		RALBFv3_RS11930	0.55	+1.3
2,630,312	-		RALBFv3_RS11930	0.56	-0.4
2,630,464	+		RALBFv3_RS11930	0.65	+0.2
2,630,465	-		RALBFv3_RS11930	0.65	+0.6
2,630,465	-		RALBFv3_RS11930	0.65	-1.5
2,630,472	+		RALBFv3_RS11930	0.66	+0.5
2,630,472	+		RALBFv3_RS11930	0.66	+0.6
2,630,472	+		RALBFv3_RS11930	0.66	-0.8
2,630,473	-		RALBFv3_RS11930	0.66	+0.3
2,630,473	-		RALBFv3_RS11930	0.66	-0.1
2,630,524	+		RALBFv3_RS11930	0.69	+0.0
2,630,525	-		RALBFv3_RS11930	0.69	-0.4
2,630,525	-		RALBFv3_RS11930	0.69	-0.5
2,630,537	+		RALBFv3_RS11930	0.70	+0.0
2,630,537	+		RALBFv3_RS11930	0.70	-0.1
2,630,537	+		RALBFv3_RS11930	0.70	+0.1
2,630,537	+		RALBFv3_RS11930	0.70	+0.0
2,630,537	+		RALBFv3_RS11930	0.70	+1.0
2,630,538	-		RALBFv3_RS11930	0.70	+1.0
2,630,538	-		RALBFv3_RS11930	0.70	+0.5
2,630,583	+		RALBFv3_RS11930	0.72	-0.2
2,630,583	+		RALBFv3_RS11930	0.72	-0.5
2,630,583	+		RALBFv3_RS11930	0.72	-1.5
2,630,583	+		RALBFv3_RS11930	0.72	-0.2
2,630,584	-		RALBFv3_RS11930	0.72	+0.3
2,630,584	-		RALBFv3_RS11930	0.72	-0.1
2,630,584	-		RALBFv3_RS11930	0.72	+0.4
2,630,584	-		RALBFv3_RS11930	0.72	-0.3
2,630,584	-		RALBFv3_RS11930	0.72	+0.2
2,630,584	-		RALBFv3_RS11930	0.72	+1.0
2,630,584	-		RALBFv3_RS11930	0.72	-0.1
2,630,589	+		RALBFv3_RS11930	0.73	+0.2
2,630,589	+		RALBFv3_RS11930	0.73	+1.0
2,630,589	+		RALBFv3_RS11930	0.73	-0.2
2,630,589	+		RALBFv3_RS11930	0.73	+0.2
2,630,589	+		RALBFv3_RS11930	0.73	+0.1
2,630,590	-		RALBFv3_RS11930	0.73	+0.0
2,630,609	+		RALBFv3_RS11930	0.74	+1.0
2,630,609	+		RALBFv3_RS11930	0.74	-0.5
2,630,609	+		RALBFv3_RS11930	0.74	-0.4
2,630,610	-		RALBFv3_RS11930	0.74	-0.0
2,630,636	+		RALBFv3_RS11930	0.75	-0.6
2,630,636	+		RALBFv3_RS11930	0.75	-0.5
2,630,636	+		RALBFv3_RS11930	0.75	-0.3
2,630,636	+		RALBFv3_RS11930	0.75	+0.2
2,630,636	+		RALBFv3_RS11930	0.75	+0.0
2,630,636	+		RALBFv3_RS11930	0.75	+1.0
2,630,637	-		RALBFv3_RS11930	0.75	-0.1
2,630,637	-		RALBFv3_RS11930	0.75	+0.5
2,630,637	-		RALBFv3_RS11930	0.75	-1.2
2,630,687	+		RALBFv3_RS11930	0.78	+0.4
2,630,687	+		RALBFv3_RS11930	0.78	-0.2
2,630,687	+		RALBFv3_RS11930	0.78	-0.1
2,630,688	-		RALBFv3_RS11930	0.78	+1.0
2,630,730	+		RALBFv3_RS11930	0.81	+1.0
2,630,730	+		RALBFv3_RS11930	0.81	-0.3
2,630,730	+		RALBFv3_RS11930	0.81	-1.8
2,630,730	+		RALBFv3_RS11930	0.81	-0.3
2,630,730	+		RALBFv3_RS11930	0.81	-1.3
2,630,730	+		RALBFv3_RS11930	0.81	-1.7
2,630,731	-		RALBFv3_RS11930	0.81	+1.5
2,630,731	-		RALBFv3_RS11930	0.81	-0.1
2,630,731	-		RALBFv3_RS11930	0.81	-0.2
2,630,731	-		RALBFv3_RS11930	0.81	+1.0
2,630,731	-		RALBFv3_RS11930	0.81	+0.1
2,630,737	+		RALBFv3_RS11930	0.81	-1.1
2,630,737	+		RALBFv3_RS11930	0.81	+1.0
2,630,737	+		RALBFv3_RS11930	0.81	-0.6
2,630,737	+		RALBFv3_RS11930	0.81	-0.5
2,630,738	-		RALBFv3_RS11930	0.81	+0.4
2,630,738	-		RALBFv3_RS11930	0.81	-0.4
2,630,738	-		RALBFv3_RS11930	0.81	-0.5
2,630,758	+		RALBFv3_RS11930	0.83	+0.3
2,630,758	+		RALBFv3_RS11930	0.83	+0.0
2,630,758	+		RALBFv3_RS11930	0.83	+1.0
2,630,758	+		RALBFv3_RS11930	0.83	-0.1
2,630,758	+		RALBFv3_RS11930	0.83	-0.8
2,630,759	-		RALBFv3_RS11930	0.83	+0.4
2,630,759	-		RALBFv3_RS11930	0.83	+0.3
2,630,759	-		RALBFv3_RS11930	0.83	+1.5
2,630,759	-		RALBFv3_RS11930	0.83	+0.0
2,630,759	-		RALBFv3_RS11930	0.83	+0.5
2,630,759	-		RALBFv3_RS11930	0.83	+0.1
2,630,776	+		RALBFv3_RS11930	0.84	-0.1
2,630,776	+		RALBFv3_RS11930	0.84	+0.0
2,630,776	+		RALBFv3_RS11930	0.84	+0.1
2,630,776	+		RALBFv3_RS11930	0.84	+1.2
2,630,777	-		RALBFv3_RS11930	0.84	-0.1
2,630,777	-		RALBFv3_RS11930	0.84	+0.9
2,630,777	-		RALBFv3_RS11930	0.84	-0.1
2,630,777	-		RALBFv3_RS11930	0.84	+0.0
2,630,817	+		RALBFv3_RS11930	0.86	-0.1
2,630,817	+		RALBFv3_RS11930	0.86	-0.4
2,630,817	+		RALBFv3_RS11930	0.86	+1.0
2,630,818	-		RALBFv3_RS11930	0.86	+1.0
2,630,818	-		RALBFv3_RS11930	0.86	-0.2
2,630,818	-		RALBFv3_RS11930	0.86	-0.2
2,630,818	-		RALBFv3_RS11930	0.86	-0.0
2,630,839	-		RALBFv3_RS11930	0.87	-0.5
2,630,912	+				-0.5
2,630,914	-				-0.2
2,630,919	+				+0.1
2,630,919	+				+1.0
2,630,919	+				+0.1
2,630,919	+				+0.3
2,630,920	-				+1.0
2,630,920	-				-0.6
2,630,920	-				+0.5
2,630,991	+				+0.3
2,630,991	+				+0.8
2,630,992	+				+0.2
2,630,992	+				-0.3
2,630,992	+				-0.1
2,630,992	+				+0.1
2,630,992	+				-0.6
2,630,992	+				+0.0
2,630,992	+				-0.6
2,630,992	+				+0.8
2,630,992	+				-0.2
2,630,992	+				-0.0
2,630,993	-				+0.9
2,630,993	-				+0.7
2,630,993	-				+0.0
2,630,993	-				+0.0
2,630,993	-				+0.0
2,630,993	-				-0.7
2,630,993	-				+0.3
2,631,008	-				-0.6
2,631,013	+				+0.1
2,631,013	+				-0.1
2,631,069	+				-0.0
2,631,070	-				-0.5
2,631,207	+				-0.0
2,631,208	-				-1.3
2,631,295	-				+0.1
2,631,305	-				+1.0
2,631,319	-				+0.9
2,631,337	+				-0.5
2,631,395	+				-0.4
2,631,458	+				-0.1
2,631,458	+				+0.3
2,631,458	+				+0.3
2,631,532	+				+0.3
2,631,532	+				+0.5
2,631,532	+				-0.1
2,631,533	-				-0.2
2,631,533	-				-0.7
2,631,533	-				+0.3
2,631,533	-				-0.2
2,631,537	-				-0.1
2,631,570	-				-0.3
2,631,885	+		RALBFv3_RS23955	0.26	-1.2
2,631,886	-		RALBFv3_RS23955	0.26	+0.1
2,631,887	+		RALBFv3_RS23955	0.26	-2.3
2,631,926	+		RALBFv3_RS23955	0.28	-0.2
2,631,937	+		RALBFv3_RS23955	0.28	-0.0
2,631,937	+		RALBFv3_RS23955	0.28	+0.3
2,631,937	+		RALBFv3_RS23955	0.28	+0.8
2,631,969	+		RALBFv3_RS23955	0.30	-1.0