Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS11805

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS11800 and RALBFv3_RS11805 are separated by 79 nucleotidesRALBFv3_RS11805 and RALBFv3_RS11810 are separated by 188 nucleotides RALBFv3_RS11800: RALBFv3_RS11800 - apolipoprotein N-acyltransferase, at 2,597,318 to 2,598,829 _RS11800 RALBFv3_RS11805: RALBFv3_RS11805 - HlyC/CorC family transporter, at 2,598,909 to 2,599,805 _RS11805 RALBFv3_RS11810: RALBFv3_RS11810 - hypothetical protein, at 2,599,994 to 2,601,295 _RS11810 Position (kb) 2598 2599 2600Strain fitness (log2 ratio) -2 -1 0 1at 2599.232 kb on - strand, within RALBFv3_RS11805at 2599.436 kb on - strand, within RALBFv3_RS11805at 2599.496 kb on - strand, within RALBFv3_RS11805at 2599.527 kb on + strand, within RALBFv3_RS11805at 2599.528 kb on - strand, within RALBFv3_RS11805at 2599.841 kb on + strandat 2599.841 kb on + strandat 2599.841 kb on + strandat 2599.841 kb on + strandat 2599.842 kb on - strandat 2599.842 kb on - strandat 2599.842 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
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2,599,232 - RALBFv3_RS11805 0.36 -1.9
2,599,436 - RALBFv3_RS11805 0.59 -0.7
2,599,496 - RALBFv3_RS11805 0.65 +0.0
2,599,527 + RALBFv3_RS11805 0.69 -0.2
2,599,528 - RALBFv3_RS11805 0.69 -0.5
2,599,841 + -1.0
2,599,841 + -0.2
2,599,841 + +1.0
2,599,841 + +0.5
2,599,842 - -0.4
2,599,842 - -1.1
2,599,842 - -0.4

Or see this region's nucleotide sequence