Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS06875

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRALBFv3_RS06870 and RALBFv3_RS06875 are separated by 234 nucleotidesRALBFv3_RS06875 and RALBFv3_RS06880 are separated by 65 nucleotidesRALBFv3_RS06880 and RALBFv3_RS06885 are separated by 154 nucleotides RALBFv3_RS06870: RALBFv3_RS06870 - ABC transporter ATP-binding protein, at 1,522,956 to 1,523,912 _RS06870 RALBFv3_RS06875: RALBFv3_RS06875 - STAS domain-containing protein, at 1,524,147 to 1,524,461 _RS06875 RALBFv3_RS06880: RALBFv3_RS06880 - hypothetical protein, at 1,524,527 to 1,525,162 _RS06880 RALBFv3_RS06885: RALBFv3_RS06885 - ABC transporter, at 1,525,317 to 1,526,126 _RS06885 Position (kb) 1524 1525Strain fitness (log2 ratio) -3 -2 -1 0 1at 1523.921 kb on - strandat 1524.214 kb on + strand, within RALBFv3_RS06875at 1524.214 kb on + strand, within RALBFv3_RS06875at 1524.634 kb on - strand, within RALBFv3_RS06880at 1524.997 kb on + strand, within RALBFv3_RS06880at 1525.163 kb on - strandat 1525.275 kb on - strandat 1525.305 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
remove
1,523,921 - -0.3
1,524,214 + RALBFv3_RS06875 0.21 -1.5
1,524,214 + RALBFv3_RS06875 0.21 -2.9
1,524,634 - RALBFv3_RS06880 0.17 -0.5
1,524,997 + RALBFv3_RS06880 0.74 -2.6
1,525,163 - +1.1
1,525,275 - +0.3
1,525,305 - -0.1

Or see this region's nucleotide sequence