Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS06230

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS06225 and RALBFv3_RS06230 are separated by 236 nucleotidesRALBFv3_RS06230 and RALBFv3_RS06235 are separated by 68 nucleotidesRALBFv3_RS06235 and RALBFv3_RS06240 are separated by 50 nucleotides RALBFv3_RS06225: RALBFv3_RS06225 - preprotein translocase subunit SecA, at 1,382,163 to 1,384,967 _RS06225 RALBFv3_RS06230: RALBFv3_RS06230 - M23 family peptidase, at 1,385,204 to 1,386,166 _RS06230 RALBFv3_RS06235: RALBFv3_RS06235 - DUF721 domain-containing protein, at 1,386,235 to 1,386,744 _RS06235 RALBFv3_RS06240: RALBFv3_RS06240 - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 1,386,795 to 1,387,712 _RS06240 Position (kb) 1385 1386 1387Strain fitness (log2 ratio) -1 0 1at 1385.506 kb on - strand, within RALBFv3_RS06230at 1386.743 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
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1,385,506 - RALBFv3_RS06230 0.31 -0.7
1,386,743 - -0.7

Or see this region's nucleotide sequence