Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS02775

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS02770 and RALBFv3_RS02775 are separated by 38 nucleotidesRALBFv3_RS02775 and RALBFv3_RS02780 are separated by 27 nucleotides RALBFv3_RS02765: RALBFv3_RS02765 - LysR family transcriptional regulator, at 615,103 to 616,077 _RS02765 RALBFv3_RS02770: RALBFv3_RS02770 - LysR family transcriptional regulator, at 615,999 to 616,970 _RS02770 RALBFv3_RS02775: RALBFv3_RS02775 - PaaI family thioesterase, at 617,009 to 617,509 _RS02775 RALBFv3_RS02780: RALBFv3_RS02780 - acyl-CoA dehydrogenase, at 617,537 to 618,799 _RS02780 Position (kb) 617 618Strain fitness (log2 ratio) -1 0 1at 616.132 kb on + strand, within RALBFv3_RS02770at 616.372 kb on + strand, within RALBFv3_RS02770at 616.900 kb on + strandat 616.900 kb on + strandat 617.008 kb on + strandat 617.009 kb on - strandat 617.009 kb on - strandat 617.132 kb on + strand, within RALBFv3_RS02775at 617.544 kb on + strandat 617.550 kb on - strandat 617.609 kb on + strandat 617.610 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
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616,132 + RALBFv3_RS02770 0.14 +0.2
616,372 + RALBFv3_RS02770 0.38 +0.1
616,900 + -0.7
616,900 + +0.1
617,008 + +0.6
617,009 - -0.9
617,009 - -0.9
617,132 + RALBFv3_RS02775 0.25 -1.0
617,544 + +0.3
617,550 - -0.2
617,609 + -0.4
617,610 - -1.6

Or see this region's nucleotide sequence