Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS00340

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS00335 and RALBFv3_RS00340 overlap by 1 nucleotidesRALBFv3_RS00340 and RALBFv3_RS00345 are separated by 10 nucleotides RALBFv3_RS00335: RALBFv3_RS00335 - chromosome segregation protein SMC, at 74,667 to 78,182 _RS00335 RALBFv3_RS00340: RALBFv3_RS00340 - cell division protein FtsZ, at 78,182 to 79,393 _RS00340 RALBFv3_RS00345: RALBFv3_RS00345 - NAD-dependent DNA ligase LigA, at 79,404 to 81,845 _RS00345 Position (kb) 78 79 80Strain fitness (log2 ratio) -2 -1 0 1at 78.293 kb on + strandat 79.223 kb on + strand, within RALBFv3_RS00340at 79.224 kb on - strand, within RALBFv3_RS00340

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
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78,293 + -1.8
79,223 + RALBFv3_RS00340 0.86 -2.4
79,224 - RALBFv3_RS00340 0.86 -2.0

Or see this region's nucleotide sequence