Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS23850

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Penicillin

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
2,066,519	+				+0.2
2,066,520	-				+0.8
2,066,520	-				+0.7
2,066,681	+		RALBFv3_RS09325	0.32	-0.1
2,066,716	+		RALBFv3_RS09325	0.46	-0.5
2,066,716	+		RALBFv3_RS09325	0.46	+1.3
2,066,716	+		RALBFv3_RS09325	0.46	-0.2
2,066,716	+		RALBFv3_RS09325	0.46	+0.3
2,066,717	-		RALBFv3_RS09325	0.46	-0.3
2,066,717	-		RALBFv3_RS09325	0.46	+0.6
2,066,722	+		RALBFv3_RS09325	0.48	+1.5
2,066,722	+		RALBFv3_RS09325	0.48	-0.3
2,066,722	+		RALBFv3_RS09325	0.48	+3.3
2,066,722	+		RALBFv3_RS09325	0.48	-0.2
2,066,723	-		RALBFv3_RS09325	0.49	+1.3
2,066,758	+		RALBFv3_RS09325	0.63	-1.4
2,066,758	+		RALBFv3_RS09325	0.63	+0.2
2,066,758	+		RALBFv3_RS09325	0.63	-0.7
2,066,758	+		RALBFv3_RS09325	0.63	-1.5
2,066,758	+		RALBFv3_RS09325	0.63	-0.3
2,066,758	+		RALBFv3_RS09325	0.63	-0.5
2,066,759	-		RALBFv3_RS09325	0.63	-0.0
2,066,759	-		RALBFv3_RS09325	0.63	+0.2
2,066,768	+		RALBFv3_RS09325	0.67	-0.2
2,066,769	-		RALBFv3_RS09325	0.67	-0.1
2,066,769	-		RALBFv3_RS09325	0.67	-1.5
2,066,969	+				+1.3
2,066,970	-				-0.3
2,066,984	+				+0.2
2,066,985	-				+1.3
2,067,001	+				+2.3
2,067,001	+				-0.0
2,067,001	+				+0.2
2,067,002	-				+2.1
2,067,003	+				-1.3
2,067,003	+				-0.6
2,067,003	+				-0.3
2,067,003	+				-0.4
2,067,004	-				-0.9
2,067,005	+				+0.0
2,067,005	+				-0.0
2,067,005	+				-0.9
2,067,006	-				+0.7
2,067,006	-				-1.2
2,067,006	-				+0.5
2,067,006	-				-0.6
2,067,006	-				+1.3
2,067,041	-				-1.4
2,067,125	+				-0.2
2,067,141	-				-0.5
2,067,154	+				-1.0
2,067,177	-				-0.1
2,067,184	+				-1.2
2,067,285	+				+0.1
2,067,285	+				-0.3
2,067,351	+				-0.3
2,067,351	+				-0.4
2,067,351	+				-0.3
2,067,351	+				-0.3
2,067,352	-				-0.6
2,067,352	-				-1.9
2,067,352	-				+0.0
2,067,352	-				+0.2
2,067,496	+				+0.5
2,067,496	+				+0.3
2,067,496	+				+0.1
2,067,496	+				+0.5
2,067,496	+				+0.3
2,067,496	+				-0.4
2,067,497	-				-0.5
2,067,497	-				-0.2
2,067,497	-				-2.0
2,067,497	-				+0.3
2,067,498	-				+0.9
2,067,625	+		RALBFv3_RS23850	0.29	-1.2
2,067,626	-		RALBFv3_RS23850	0.29	-0.3
2,067,638	+		RALBFv3_RS23850	0.32	-0.1
2,067,692	+		RALBFv3_RS23850	0.43	-0.7
2,067,693	-		RALBFv3_RS23850	0.43	-1.5
2,067,693	-		RALBFv3_RS23850	0.43	+0.1
2,067,693	-		RALBFv3_RS23850	0.43	-0.2
2,067,705	-		RALBFv3_RS23850	0.46	-0.3
2,067,725	+		RALBFv3_RS23850	0.50	+1.3
2,067,726	-		RALBFv3_RS23850	0.51	-0.2
2,067,726	-		RALBFv3_RS23850	0.51	-0.2
2,067,836	+		RALBFv3_RS23850	0.74	-0.1
2,067,836	+		RALBFv3_RS23850	0.74	-0.7
2,067,836	+		RALBFv3_RS23850	0.74	-0.6
2,067,836	+		RALBFv3_RS23850	0.74	-0.2
2,067,836	+		RALBFv3_RS23850	0.74	-0.1
2,067,836	+		RALBFv3_RS23850	0.74	-1.0
2,067,836	+		RALBFv3_RS23850	0.74	-0.6
2,067,836	+		RALBFv3_RS23850	0.74	+0.3
2,067,836	+		RALBFv3_RS23850	0.74	-0.0
2,067,837	-		RALBFv3_RS23850	0.74	-0.1
2,067,837	-		RALBFv3_RS23850	0.74	-0.9
2,067,837	-		RALBFv3_RS23850	0.74	-0.3
2,067,837	-		RALBFv3_RS23850	0.74	-0.2
2,067,917	-				-0.1
2,067,978	+				+0.3
2,067,979	-				+0.7
2,067,992	+				-0.3
2,067,992	+				-1.0
2,068,032	+				+0.1
2,068,033	-				+0.5
2,068,037	+				-0.5
2,068,185	+				-0.2
2,068,185	+				+0.0
2,068,185	+				-0.7
2,068,186	-				-0.0
2,068,186	-				+1.3
2,068,186	-				-0.3
2,068,186	-				+0.7
2,068,186	-				+0.1
2,068,215	+				-0.2
2,068,216	-				-0.6
2,068,216	-				-0.2
2,068,287	+		RALBFv3_RS09330	0.16	-1.9
2,068,395	+		RALBFv3_RS09330	0.27	+0.2
2,068,395	+		RALBFv3_RS09330	0.27	-0.5
2,068,443	+		RALBFv3_RS09330	0.31	-0.7
2,068,443	+		RALBFv3_RS09330	0.31	+0.1
2,068,443	+		RALBFv3_RS09330	0.31	+0.1
2,068,444	-		RALBFv3_RS09330	0.32	+0.5
2,068,446	+		RALBFv3_RS09330	0.32	+0.1
2,068,446	+		RALBFv3_RS09330	0.32	-0.0
2,068,447	-		RALBFv3_RS09330	0.32	-0.2
2,068,447	-		RALBFv3_RS09330	0.32	-0.6
2,068,452	+		RALBFv3_RS09330	0.32	+0.6
2,068,452	+		RALBFv3_RS09330	0.32	-0.3
2,068,452	+		RALBFv3_RS09330	0.32	+0.4
2,068,452	+		RALBFv3_RS09330	0.32	-0.6
2,068,452	+		RALBFv3_RS09330	0.32	+0.0
2,068,453	-		RALBFv3_RS09330	0.32	+0.1
2,068,453	-		RALBFv3_RS09330	0.32	+0.5
2,068,453	-		RALBFv3_RS09330	0.32	-0.6
2,068,453	-		RALBFv3_RS09330	0.32	+0.4
2,068,453	-		RALBFv3_RS09330	0.32	+0.1
2,068,454	+		RALBFv3_RS09330	0.33	-1.1
2,068,454	+		RALBFv3_RS09330	0.33	+1.3
2,068,454	+		RALBFv3_RS09330	0.33	-1.2
2,068,454	+		RALBFv3_RS09330	0.33	-0.3
2,068,454	+		RALBFv3_RS09330	0.33	+0.3
2,068,455	-		RALBFv3_RS09330	0.33	+1.1
2,068,455	-		RALBFv3_RS09330	0.33	+0.4
2,068,455	-		RALBFv3_RS09330	0.33	-0.5
2,068,485	+		RALBFv3_RS09330	0.36	-1.2
2,068,485	+		RALBFv3_RS09330	0.36	+1.3
2,068,486	-		RALBFv3_RS09330	0.36	+0.1
2,068,566	+		RALBFv3_RS09330	0.44	+0.7
2,068,567	-		RALBFv3_RS09330	0.44	-1.6
2,068,567	-		RALBFv3_RS09330	0.44	-0.2
2,068,567	-		RALBFv3_RS09330	0.44	+0.3
2,068,567	-		RALBFv3_RS09330	0.44	+1.3
2,068,567	-		RALBFv3_RS09330	0.44	-0.7
2,068,568	-		RALBFv3_RS09330	0.44	-1.4
2,068,651	-		RALBFv3_RS09330	0.52	-0.2
2,068,666	+		RALBFv3_RS09330	0.53	-1.2
2,068,666	+		RALBFv3_RS09330	0.53	+1.3
2,068,666	+		RALBFv3_RS09330	0.53	+0.1
2,068,666	+		RALBFv3_RS09330	0.53	+0.2
2,068,791	+		RALBFv3_RS09330	0.66	-0.8
2,068,791	+		RALBFv3_RS09330	0.66	+0.5
2,068,791	+		RALBFv3_RS09330	0.66	+0.4
2,068,791	+		RALBFv3_RS09330	0.66	-0.5
2,068,792	-		RALBFv3_RS09330	0.66	+1.3
2,068,906	+		RALBFv3_RS09330	0.77	-1.2
2,068,906	+		RALBFv3_RS09330	0.77	-0.3
2,068,906	+		RALBFv3_RS09330	0.77	-0.4
2,068,907	-		RALBFv3_RS09330	0.77	+0.4
2,068,907	-		RALBFv3_RS09330	0.77	-0.3
2,068,923	+		RALBFv3_RS09330	0.79	-0.5
2,068,923	+		RALBFv3_RS09330	0.79	-0.8
2,068,924	-		RALBFv3_RS09330	0.79	-0.3
2,068,941	+		RALBFv3_RS09330	0.80	+1.3
2,068,941	+		RALBFv3_RS09330	0.80	+0.3
2,068,942	-		RALBFv3_RS09330	0.80	-0.7
2,068,942	-		RALBFv3_RS09330	0.80	-0.2
2,068,942	-		RALBFv3_RS09330	0.80	-0.2
2,068,942	-		RALBFv3_RS09330	0.80	-0.5
2,068,942	-		RALBFv3_RS09330	0.80	-0.2
2,068,942	-		RALBFv3_RS09330	0.80	+0.3
2,068,942	-		RALBFv3_RS09330	0.80	+0.4
2,068,942	-		RALBFv3_RS09330	0.80	-0.1
2,068,942	-		RALBFv3_RS09330	0.80	-0.1
2,068,943	+		RALBFv3_RS09330	0.80	+1.3