Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS04795

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS04785 and RALBFv3_RS04790 are separated by 30 nucleotidesRALBFv3_RS04790 and RALBFv3_RS04795 are separated by 156 nucleotidesRALBFv3_RS04795 and RALBFv3_RS04800 overlap by 4 nucleotides RALBFv3_RS04785: RALBFv3_RS04785 - lipoprotein signal peptidase, at 1,070,235 to 1,070,759 _RS04785 RALBFv3_RS04790: RALBFv3_RS04790 - YdcF family protein, at 1,070,790 to 1,071,362 _RS04790 RALBFv3_RS04795: RALBFv3_RS04795 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 1,071,519 to 1,072,724 _RS04795 RALBFv3_RS04800: RALBFv3_RS04800 - LLM class flavin-dependent oxidoreductase, at 1,072,721 to 1,073,773 _RS04800 Position (kb) 1071 1072 1073Strain fitness (log2 ratio) -2 -1 0 1at 1070.806 kb on + strandat 1070.851 kb on + strand, within RALBFv3_RS04790at 1070.852 kb on - strand, within RALBFv3_RS04790at 1070.876 kb on + strand, within RALBFv3_RS04790at 1071.163 kb on + strand, within RALBFv3_RS04790at 1071.163 kb on + strand, within RALBFv3_RS04790at 1071.464 kb on + strandat 1072.847 kb on - strand, within RALBFv3_RS04800at 1072.847 kb on - strand, within RALBFv3_RS04800at 1072.847 kb on - strand, within RALBFv3_RS04800at 1072.853 kb on + strand, within RALBFv3_RS04800at 1072.854 kb on - strand, within RALBFv3_RS04800at 1072.854 kb on - strand, within RALBFv3_RS04800at 1072.927 kb on + strand, within RALBFv3_RS04800at 1072.976 kb on + strand, within RALBFv3_RS04800at 1072.976 kb on + strand, within RALBFv3_RS04800at 1072.979 kb on + strand, within RALBFv3_RS04800at 1072.980 kb on - strand, within RALBFv3_RS04800at 1072.980 kb on - strand, within RALBFv3_RS04800at 1072.980 kb on - strand, within RALBFv3_RS04800at 1073.109 kb on - strand, within RALBFv3_RS04800at 1073.349 kb on - strand, within RALBFv3_RS04800at 1073.387 kb on + strand, within RALBFv3_RS04800at 1073.388 kb on - strand, within RALBFv3_RS04800at 1073.536 kb on + strand, within RALBFv3_RS04800at 1073.700 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
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1,070,806 + +0.2
1,070,851 + RALBFv3_RS04790 0.11 +0.1
1,070,852 - RALBFv3_RS04790 0.11 -1.2
1,070,876 + RALBFv3_RS04790 0.15 -1.1
1,071,163 + RALBFv3_RS04790 0.65 -0.2
1,071,163 + RALBFv3_RS04790 0.65 -0.3
1,071,464 + +0.4
1,072,847 - RALBFv3_RS04800 0.12 -0.6
1,072,847 - RALBFv3_RS04800 0.12 -0.0
1,072,847 - RALBFv3_RS04800 0.12 +1.0
1,072,853 + RALBFv3_RS04800 0.13 -0.2
1,072,854 - RALBFv3_RS04800 0.13 +0.1
1,072,854 - RALBFv3_RS04800 0.13 -0.4
1,072,927 + RALBFv3_RS04800 0.20 +0.5
1,072,976 + RALBFv3_RS04800 0.24 -0.1
1,072,976 + RALBFv3_RS04800 0.24 +1.0
1,072,979 + RALBFv3_RS04800 0.25 +0.4
1,072,980 - RALBFv3_RS04800 0.25 -2.6
1,072,980 - RALBFv3_RS04800 0.25 +0.7
1,072,980 - RALBFv3_RS04800 0.25 +0.2
1,073,109 - RALBFv3_RS04800 0.37 -1.9
1,073,349 - RALBFv3_RS04800 0.60 -0.0
1,073,387 + RALBFv3_RS04800 0.63 +0.2
1,073,388 - RALBFv3_RS04800 0.63 -0.3
1,073,536 + RALBFv3_RS04800 0.77 +1.1
1,073,700 - -0.5

Or see this region's nucleotide sequence