Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS19855

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Penicillin

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS19850 and RALBFv3_RS19855 are separated by 44 nucleotidesRALBFv3_RS19855 and RALBFv3_RS19860 are separated by 27 nucleotides RALBFv3_RS19850: RALBFv3_RS19850 - putative 2-aminoethylphosphonate ABC transporter substrate-binding protein, at 1,135,459 to 1,136,478 _RS19850 RALBFv3_RS19855: RALBFv3_RS19855 - phosphonoacetaldehyde hydrolase, at 1,136,523 to 1,137,389 _RS19855 RALBFv3_RS19860: RALBFv3_RS19860 - putative 2-aminoethylphosphonate ABC transporter permease subunit, at 1,137,417 to 1,139,171 _RS19860 Position (kb) 1136 1137 1138Strain fitness (log2 ratio) -1 0 1at 1135.634 kb on + strand, within RALBFv3_RS19850at 1135.908 kb on - strand, within RALBFv3_RS19850at 1135.908 kb on - strand, within RALBFv3_RS19850at 1136.357 kb on + strand, within RALBFv3_RS19850at 1136.357 kb on + strand, within RALBFv3_RS19850at 1136.390 kb on + strandat 1136.612 kb on - strand, within RALBFv3_RS19855at 1136.699 kb on - strand, within RALBFv3_RS19855at 1136.699 kb on - strand, within RALBFv3_RS19855at 1137.082 kb on + strand, within RALBFv3_RS19855at 1137.082 kb on + strand, within RALBFv3_RS19855at 1137.082 kb on + strand, within RALBFv3_RS19855at 1137.083 kb on - strand, within RALBFv3_RS19855at 1137.394 kb on + strandat 1137.394 kb on + strandat 1137.395 kb on - strandat 1137.395 kb on - strandat 1137.893 kb on - strand, within RALBFv3_RS19860at 1138.139 kb on - strand, within RALBFv3_RS19860

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
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1,135,634 + RALBFv3_RS19850 0.17 +0.4
1,135,908 - RALBFv3_RS19850 0.44 +0.9
1,135,908 - RALBFv3_RS19850 0.44 +0.2
1,136,357 + RALBFv3_RS19850 0.88 -0.1
1,136,357 + RALBFv3_RS19850 0.88 -0.6
1,136,390 + -0.2
1,136,612 - RALBFv3_RS19855 0.10 +0.5
1,136,699 - RALBFv3_RS19855 0.20 -0.1
1,136,699 - RALBFv3_RS19855 0.20 -1.3
1,137,082 + RALBFv3_RS19855 0.64 -0.3
1,137,082 + RALBFv3_RS19855 0.64 -0.1
1,137,082 + RALBFv3_RS19855 0.64 -0.2
1,137,083 - RALBFv3_RS19855 0.65 -0.3
1,137,394 + -0.8
1,137,394 + -0.1
1,137,395 - +0.8
1,137,395 - -0.3
1,137,893 - RALBFv3_RS19860 0.27 -0.4
1,138,139 - RALBFv3_RS19860 0.41 -0.2

Or see this region's nucleotide sequence