Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS20105

Experiment: SMSA no antibiotic control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS20100 and RALBFv3_RS20105 are separated by 7 nucleotidesRALBFv3_RS20105 and RALBFv3_RS20110 are separated by 10 nucleotidesRALBFv3_RS20110 and RALBFv3_RS24490 are separated by 328 nucleotides RALBFv3_RS20100: RALBFv3_RS20100 - sterol desaturase family protein, at 1,204,927 to 1,206,153 _RS20100 RALBFv3_RS20105: RALBFv3_RS20105 - hypothetical protein, at 1,206,161 to 1,206,679 _RS20105 RALBFv3_RS20110: RALBFv3_RS20110 - hypothetical protein, at 1,206,690 to 1,206,890 _RS20110 RALBFv3_RS24490: RALBFv3_RS24490 - hypothetical protein, at 1,207,219 to 1,207,344 _RS24490 Position (kb) 1206 1207Strain fitness (log2 ratio) -2 -1 0 1 2at 1205.353 kb on + strand, within RALBFv3_RS20100at 1205.353 kb on + strand, within RALBFv3_RS20100at 1205.353 kb on + strand, within RALBFv3_RS20100at 1205.354 kb on - strand, within RALBFv3_RS20100at 1205.354 kb on - strand, within RALBFv3_RS20100at 1205.435 kb on - strand, within RALBFv3_RS20100at 1205.650 kb on + strand, within RALBFv3_RS20100at 1205.650 kb on + strand, within RALBFv3_RS20100at 1205.650 kb on + strand, within RALBFv3_RS20100at 1205.651 kb on - strand, within RALBFv3_RS20100at 1205.651 kb on - strand, within RALBFv3_RS20100at 1205.668 kb on + strand, within RALBFv3_RS20100at 1205.836 kb on + strand, within RALBFv3_RS20100at 1205.836 kb on + strand, within RALBFv3_RS20100at 1205.837 kb on - strand, within RALBFv3_RS20100at 1205.837 kb on - strand, within RALBFv3_RS20100at 1206.004 kb on + strand, within RALBFv3_RS20100at 1206.053 kb on - strandat 1206.070 kb on + strandat 1206.070 kb on + strandat 1206.071 kb on - strandat 1206.233 kb on + strand, within RALBFv3_RS20105at 1206.234 kb on - strand, within RALBFv3_RS20105at 1206.312 kb on - strand, within RALBFv3_RS20105at 1206.312 kb on - strand, within RALBFv3_RS20105at 1206.312 kb on - strand, within RALBFv3_RS20105at 1206.315 kb on - strand, within RALBFv3_RS20105at 1206.476 kb on + strand, within RALBFv3_RS20105at 1206.736 kb on + strand, within RALBFv3_RS20110at 1206.737 kb on - strand, within RALBFv3_RS20110at 1206.757 kb on + strand, within RALBFv3_RS20110at 1206.757 kb on + strand, within RALBFv3_RS20110at 1206.758 kb on - strand, within RALBFv3_RS20110at 1206.758 kb on - strand, within RALBFv3_RS20110at 1206.766 kb on + strand, within RALBFv3_RS20110at 1206.766 kb on + strand, within RALBFv3_RS20110at 1206.766 kb on + strand, within RALBFv3_RS20110at 1206.766 kb on + strand, within RALBFv3_RS20110at 1206.767 kb on - strand, within RALBFv3_RS20110at 1206.767 kb on - strand, within RALBFv3_RS20110at 1206.767 kb on - strand, within RALBFv3_RS20110at 1206.767 kb on - strand, within RALBFv3_RS20110at 1206.767 kb on - strand, within RALBFv3_RS20110at 1206.868 kb on - strand, within RALBFv3_RS20110at 1206.868 kb on - strand, within RALBFv3_RS20110at 1207.224 kb on + strandat 1207.224 kb on + strandat 1207.225 kb on - strandat 1207.225 kb on - strandat 1207.373 kb on + strandat 1207.504 kb on - strandat 1207.504 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA no antibiotic control
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1,205,353 + RALBFv3_RS20100 0.35 -0.1
1,205,353 + RALBFv3_RS20100 0.35 +0.1
1,205,353 + RALBFv3_RS20100 0.35 -1.1
1,205,354 - RALBFv3_RS20100 0.35 -0.0
1,205,354 - RALBFv3_RS20100 0.35 +0.5
1,205,435 - RALBFv3_RS20100 0.41 -0.0
1,205,650 + RALBFv3_RS20100 0.59 +0.3
1,205,650 + RALBFv3_RS20100 0.59 -0.1
1,205,650 + RALBFv3_RS20100 0.59 +0.3
1,205,651 - RALBFv3_RS20100 0.59 -0.7
1,205,651 - RALBFv3_RS20100 0.59 -0.4
1,205,668 + RALBFv3_RS20100 0.60 -0.9
1,205,836 + RALBFv3_RS20100 0.74 +0.3
1,205,836 + RALBFv3_RS20100 0.74 -0.0
1,205,837 - RALBFv3_RS20100 0.74 +0.5
1,205,837 - RALBFv3_RS20100 0.74 -0.2
1,206,004 + RALBFv3_RS20100 0.88 +0.5
1,206,053 - -0.4
1,206,070 + +0.9
1,206,070 + -0.1
1,206,071 - -0.0
1,206,233 + RALBFv3_RS20105 0.14 -0.3
1,206,234 - RALBFv3_RS20105 0.14 -0.1
1,206,312 - RALBFv3_RS20105 0.29 +0.3
1,206,312 - RALBFv3_RS20105 0.29 -0.2
1,206,312 - RALBFv3_RS20105 0.29 +0.0
1,206,315 - RALBFv3_RS20105 0.30 +0.9
1,206,476 + RALBFv3_RS20105 0.61 -1.0
1,206,736 + RALBFv3_RS20110 0.23 -0.7
1,206,737 - RALBFv3_RS20110 0.23 -0.8
1,206,757 + RALBFv3_RS20110 0.33 -0.2
1,206,757 + RALBFv3_RS20110 0.33 +2.2
1,206,758 - RALBFv3_RS20110 0.34 -1.8
1,206,758 - RALBFv3_RS20110 0.34 +0.9
1,206,766 + RALBFv3_RS20110 0.38 -0.7
1,206,766 + RALBFv3_RS20110 0.38 -1.0
1,206,766 + RALBFv3_RS20110 0.38 -0.5
1,206,766 + RALBFv3_RS20110 0.38 -0.1
1,206,767 - RALBFv3_RS20110 0.38 +1.1
1,206,767 - RALBFv3_RS20110 0.38 -0.4
1,206,767 - RALBFv3_RS20110 0.38 -1.5
1,206,767 - RALBFv3_RS20110 0.38 +0.4
1,206,767 - RALBFv3_RS20110 0.38 -0.7
1,206,868 - RALBFv3_RS20110 0.89 -0.6
1,206,868 - RALBFv3_RS20110 0.89 -0.7
1,207,224 + -0.2
1,207,224 + -0.0
1,207,225 - +0.3
1,207,225 - -0.3
1,207,373 + +0.9
1,207,504 - -1.7
1,207,504 - -0.2

Or see this region's nucleotide sequence