Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS02920

Experiment: SMSA no antibiotic control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRALBFv3_RS02915 and RALBFv3_RS02920 are separated by 13 nucleotidesRALBFv3_RS02920 and RALBFv3_RS02925 are separated by 27 nucleotidesRALBFv3_RS02925 and RALBFv3_RS02930 are separated by 17 nucleotides RALBFv3_RS02915: RALBFv3_RS02915 - NADH-quinone oxidoreductase subunit M, at 642,255 to 643,721 _RS02915 RALBFv3_RS02920: RALBFv3_RS02920 - NADH-quinone oxidoreductase subunit L, at 643,735 to 645,795 _RS02920 RALBFv3_RS02925: RALBFv3_RS02925 - NADH-quinone oxidoreductase subunit K, at 645,823 to 646,128 _RS02925 RALBFv3_RS02930: RALBFv3_RS02930 - NADH-quinone oxidoreductase subunit J, at 646,146 to 646,778 _RS02930 Position (kb) 643 644 645 646Strain fitness (log2 ratio) -1 0 1at 643.737 kb on - strandat 645.467 kb on - strand, within RALBFv3_RS02920

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction SMSA no antibiotic control
remove
643,737 - -0.0
645,467 - RALBFv3_RS02920 0.84 +0.6

Or see this region's nucleotide sequence