Experiment: CPG no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS04055 and RALBFv3_RS04060 are separated by 170 nucleotides RALBFv3_RS04060 and RALBFv3_RS04065 are separated by 65 nucleotides RALBFv3_RS04065 and RALBFv3_RS04070 are separated by 8 nucleotides RALBFv3_RS04070 and RALBFv3_RS04075 are separated by 3 nucleotides
RALBFv3_RS04055: RALBFv3_RS04055 - hypothetical protein, at 905,916 to 907,448
_RS04055
RALBFv3_RS04060: RALBFv3_RS04060 - type II secretion system protein, at 907,619 to 908,131
_RS04060
RALBFv3_RS04065: RALBFv3_RS04065 - type II secretion system protein, at 908,197 to 908,598
_RS04065
RALBFv3_RS04070: RALBFv3_RS04070 - type II secretion system protein, at 908,607 to 909,125
_RS04070
RALBFv3_RS04075: RALBFv3_RS04075 - general secretion pathway protein GspD, at 909,129 to 911,453
_RS04075
Position (kb) 908
909 Strain fitness (log2 ratio) -2
-1
0
1 at 907.202 kb on - strand, within RALBFv3_RS04055 at 907.202 kb on - strand, within RALBFv3_RS04055 at 907.234 kb on + strand, within RALBFv3_RS04055 at 907.234 kb on + strand, within RALBFv3_RS04055 at 907.234 kb on + strand, within RALBFv3_RS04055 at 907.234 kb on + strand, within RALBFv3_RS04055 at 907.235 kb on - strand, within RALBFv3_RS04055 at 907.235 kb on - strand, within RALBFv3_RS04055 at 907.235 kb on - strand, within RALBFv3_RS04055 at 907.235 kb on - strand, within RALBFv3_RS04055 at 907.264 kb on + strand, within RALBFv3_RS04055 at 907.448 kb on + strand at 907.448 kb on + strand at 907.448 kb on + strand at 907.448 kb on + strand at 907.448 kb on + strand at 907.448 kb on + strand at 907.448 kb on + strand at 907.448 kb on + strand at 907.449 kb on - strand at 907.449 kb on - strand at 907.449 kb on - strand at 907.449 kb on - strand at 907.503 kb on - strand at 907.549 kb on - strand at 907.593 kb on + strand at 907.594 kb on - strand at 907.749 kb on + strand, within RALBFv3_RS04060 at 907.777 kb on - strand, within RALBFv3_RS04060 at 907.836 kb on + strand, within RALBFv3_RS04060 at 907.837 kb on - strand, within RALBFv3_RS04060 at 907.989 kb on + strand, within RALBFv3_RS04060 at 907.990 kb on - strand, within RALBFv3_RS04060 at 907.990 kb on - strand, within RALBFv3_RS04060 at 908.264 kb on + strand, within RALBFv3_RS04065 at 908.409 kb on - strand, within RALBFv3_RS04065 at 908.409 kb on - strand, within RALBFv3_RS04065 at 908.411 kb on + strand, within RALBFv3_RS04065 at 908.412 kb on - strand, within RALBFv3_RS04065 at 908.412 kb on - strand, within RALBFv3_RS04065 at 908.620 kb on + strand at 908.621 kb on - strand at 908.621 kb on - strand at 908.621 kb on - strand at 908.621 kb on - strand at 908.819 kb on + strand, within RALBFv3_RS04070 at 908.938 kb on - strand, within RALBFv3_RS04070 at 909.130 kb on + strand at 909.130 kb on + strand at 909.134 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG no stress control remove 907,202 - RALBFv3_RS04055 0.84 -0.4 907,202 - RALBFv3_RS04055 0.84 +0.3 907,234 + RALBFv3_RS04055 0.86 +1.6 907,234 + RALBFv3_RS04055 0.86 +0.9 907,234 + RALBFv3_RS04055 0.86 -2.1 907,234 + RALBFv3_RS04055 0.86 -0.1 907,235 - RALBFv3_RS04055 0.86 -0.2 907,235 - RALBFv3_RS04055 0.86 +0.1 907,235 - RALBFv3_RS04055 0.86 -0.7 907,235 - RALBFv3_RS04055 0.86 -0.2 907,264 + RALBFv3_RS04055 0.88 -0.9 907,448 + -0.7 907,448 + -1.0 907,448 + -1.3 907,448 + +0.1 907,448 + +0.6 907,448 + -0.3 907,448 + -1.5 907,448 + +0.1 907,449 - +1.3 907,449 - -0.1 907,449 - +1.6 907,449 - -0.6 907,503 - -1.3 907,549 - -1.0 907,593 + -0.1 907,594 - -0.0 907,749 + RALBFv3_RS04060 0.25 -0.3 907,777 - RALBFv3_RS04060 0.31 -0.8 907,836 + RALBFv3_RS04060 0.42 -0.1 907,837 - RALBFv3_RS04060 0.42 -1.0 907,989 + RALBFv3_RS04060 0.72 -0.0 907,990 - RALBFv3_RS04060 0.72 -1.0 907,990 - RALBFv3_RS04060 0.72 +1.7 908,264 + RALBFv3_RS04065 0.17 -0.0 908,409 - RALBFv3_RS04065 0.53 -1.4 908,409 - RALBFv3_RS04065 0.53 -1.3 908,411 + RALBFv3_RS04065 0.53 -0.8 908,412 - RALBFv3_RS04065 0.53 -1.0 908,412 - RALBFv3_RS04065 0.53 +0.2 908,620 + -0.7 908,621 - -0.2 908,621 - -0.3 908,621 - -0.9 908,621 - +0.5 908,819 + RALBFv3_RS04070 0.41 -1.5 908,938 - RALBFv3_RS04070 0.64 -0.3 909,130 + +1.3 909,130 + +0.8 909,134 - +0.3
Or see this region's nucleotide sequence