Experiment: CPG no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03450 and RALBFv3_RS03455 are separated by 13 nucleotides RALBFv3_RS03455 and RALBFv3_RS03460 are separated by 65 nucleotides RALBFv3_RS03460 and RALBFv3_RS03465 are separated by 55 nucleotides RALBFv3_RS03465 and RALBFv3_RS03470 overlap by 4 nucleotides
RALBFv3_RS03450: RALBFv3_RS03450 - ABC transporter permease, at 760,953 to 762,062
_RS03450
RALBFv3_RS03455: RALBFv3_RS03455 - ABC transporter permease, at 762,076 to 762,996
_RS03455
RALBFv3_RS03460: RALBFv3_RS03460 - BMP family ABC transporter substrate-binding protein, at 763,062 to 764,216
_RS03460
RALBFv3_RS03465: RALBFv3_RS03465 - DUF4019 domain-containing protein, at 764,272 to 764,832
_RS03465
RALBFv3_RS03470: RALBFv3_RS03470 - hypothetical protein, at 764,829 to 765,350
_RS03470
Position (kb) 763
764
765 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 762.235 kb on + strand, within RALBFv3_RS03455 at 762.433 kb on + strand, within RALBFv3_RS03455 at 762.433 kb on + strand, within RALBFv3_RS03455 at 762.503 kb on - strand, within RALBFv3_RS03455 at 762.503 kb on - strand, within RALBFv3_RS03455 at 762.503 kb on - strand, within RALBFv3_RS03455 at 762.697 kb on + strand, within RALBFv3_RS03455 at 762.698 kb on - strand, within RALBFv3_RS03455 at 762.836 kb on - strand, within RALBFv3_RS03455 at 763.236 kb on + strand, within RALBFv3_RS03460 at 763.401 kb on + strand, within RALBFv3_RS03460 at 763.525 kb on - strand, within RALBFv3_RS03460 at 763.539 kb on + strand, within RALBFv3_RS03460 at 763.539 kb on + strand, within RALBFv3_RS03460 at 763.539 kb on + strand, within RALBFv3_RS03460 at 763.539 kb on + strand, within RALBFv3_RS03460 at 763.540 kb on - strand, within RALBFv3_RS03460 at 763.540 kb on - strand, within RALBFv3_RS03460 at 763.551 kb on + strand, within RALBFv3_RS03460 at 763.640 kb on + strand, within RALBFv3_RS03460 at 763.641 kb on - strand, within RALBFv3_RS03460 at 763.833 kb on + strand, within RALBFv3_RS03460 at 763.834 kb on - strand, within RALBFv3_RS03460 at 763.914 kb on + strand, within RALBFv3_RS03460 at 763.914 kb on + strand, within RALBFv3_RS03460 at 763.914 kb on + strand, within RALBFv3_RS03460 at 763.915 kb on - strand, within RALBFv3_RS03460 at 763.917 kb on + strand, within RALBFv3_RS03460 at 763.917 kb on + strand, within RALBFv3_RS03460 at 763.918 kb on - strand, within RALBFv3_RS03460 at 763.918 kb on - strand, within RALBFv3_RS03460 at 763.918 kb on - strand, within RALBFv3_RS03460 at 763.918 kb on - strand, within RALBFv3_RS03460 at 764.276 kb on + strand at 764.277 kb on - strand at 764.282 kb on + strand at 764.283 kb on - strand at 764.283 kb on - strand at 764.303 kb on + strand at 764.303 kb on + strand at 764.303 kb on + strand at 764.304 kb on - strand at 764.304 kb on - strand at 764.307 kb on - strand at 764.307 kb on - strand at 764.307 kb on - strand at 764.373 kb on - strand, within RALBFv3_RS03465 at 764.373 kb on - strand, within RALBFv3_RS03465 at 764.423 kb on + strand, within RALBFv3_RS03465 at 764.424 kb on - strand, within RALBFv3_RS03465 at 764.553 kb on - strand, within RALBFv3_RS03465 at 764.585 kb on + strand, within RALBFv3_RS03465 at 764.600 kb on + strand, within RALBFv3_RS03465 at 764.601 kb on - strand, within RALBFv3_RS03465 at 765.095 kb on - strand, within RALBFv3_RS03470 at 765.095 kb on - strand, within RALBFv3_RS03470
Per-strain Table
Position Strand Gene LocusTag Fraction CPG no stress control remove 762,235 + RALBFv3_RS03455 0.17 -0.4 762,433 + RALBFv3_RS03455 0.39 +0.0 762,433 + RALBFv3_RS03455 0.39 -0.2 762,503 - RALBFv3_RS03455 0.46 -0.3 762,503 - RALBFv3_RS03455 0.46 -0.6 762,503 - RALBFv3_RS03455 0.46 +0.2 762,697 + RALBFv3_RS03455 0.67 -0.1 762,698 - RALBFv3_RS03455 0.68 +0.3 762,836 - RALBFv3_RS03455 0.83 +0.4 763,236 + RALBFv3_RS03460 0.15 +1.5 763,401 + RALBFv3_RS03460 0.29 +0.2 763,525 - RALBFv3_RS03460 0.40 -0.8 763,539 + RALBFv3_RS03460 0.41 +1.1 763,539 + RALBFv3_RS03460 0.41 -0.2 763,539 + RALBFv3_RS03460 0.41 -0.2 763,539 + RALBFv3_RS03460 0.41 -0.6 763,540 - RALBFv3_RS03460 0.41 +0.2 763,540 - RALBFv3_RS03460 0.41 +0.1 763,551 + RALBFv3_RS03460 0.42 -0.3 763,640 + RALBFv3_RS03460 0.50 -0.0 763,641 - RALBFv3_RS03460 0.50 -1.4 763,833 + RALBFv3_RS03460 0.67 -0.0 763,834 - RALBFv3_RS03460 0.67 -0.0 763,914 + RALBFv3_RS03460 0.74 +1.3 763,914 + RALBFv3_RS03460 0.74 -1.7 763,914 + RALBFv3_RS03460 0.74 -0.2 763,915 - RALBFv3_RS03460 0.74 +0.4 763,917 + RALBFv3_RS03460 0.74 -1.1 763,917 + RALBFv3_RS03460 0.74 +0.2 763,918 - RALBFv3_RS03460 0.74 -0.4 763,918 - RALBFv3_RS03460 0.74 +1.3 763,918 - RALBFv3_RS03460 0.74 +1.3 763,918 - RALBFv3_RS03460 0.74 +0.7 764,276 + -0.9 764,277 - -0.6 764,282 + +0.3 764,283 - +0.9 764,283 - -0.2 764,303 + -2.2 764,303 + +1.3 764,303 + +0.0 764,304 - +0.0 764,304 - +0.2 764,307 - +0.6 764,307 - +1.0 764,307 - -1.1 764,373 - RALBFv3_RS03465 0.18 +0.6 764,373 - RALBFv3_RS03465 0.18 +0.2 764,423 + RALBFv3_RS03465 0.27 -0.7 764,424 - RALBFv3_RS03465 0.27 +0.4 764,553 - RALBFv3_RS03465 0.50 -0.1 764,585 + RALBFv3_RS03465 0.56 -1.2 764,600 + RALBFv3_RS03465 0.58 -0.1 764,601 - RALBFv3_RS03465 0.59 +0.5 765,095 - RALBFv3_RS03470 0.51 -1.7 765,095 - RALBFv3_RS03470 0.51 -4.9
Or see this region's nucleotide sequence