Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS20745

Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS20740 and HMPREF1058_RS09985 are separated by 11 nucleotidesHMPREF1058_RS09985 and HMPREF1058_RS20745 are separated by 12 nucleotidesHMPREF1058_RS20745 and HMPREF1058_RS09980 are separated by 15 nucleotidesHMPREF1058_RS09980 and HMPREF1058_RS09975 are separated by 2 nucleotides HMPREF1058_RS20740: HMPREF1058_RS20740 - hypothetical protein, at 751,869 to 752,084 _RS20740 HMPREF1058_RS09985: HMPREF1058_RS09985 - hypothetical protein, at 752,096 to 752,317 _RS09985 HMPREF1058_RS20745: HMPREF1058_RS20745 - hypothetical protein, at 752,330 to 752,926 _RS20745 HMPREF1058_RS09980: HMPREF1058_RS09980 - PcfK-like family protein, at 752,942 to 753,364 _RS09980 HMPREF1058_RS09975: HMPREF1058_RS09975 - PcfJ family protein, at 753,367 to 754,656 _RS09975 Position (kb) 752 753Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 751.400 kb on + strandat 751.400 kb on + strandat 751.677 kb on - strandat 751.845 kb on - strandat 751.905 kb on + strand, within HMPREF1058_RS20740at 752.139 kb on - strand, within HMPREF1058_RS09985at 752.156 kb on - strand, within HMPREF1058_RS09985at 752.165 kb on + strand, within HMPREF1058_RS09985at 752.166 kb on - strand, within HMPREF1058_RS09985at 752.285 kb on + strand, within HMPREF1058_RS09985at 752.286 kb on - strand, within HMPREF1058_RS09985at 752.351 kb on + strandat 752.351 kb on + strandat 752.368 kb on - strandat 752.403 kb on - strand, within HMPREF1058_RS20745at 752.606 kb on + strand, within HMPREF1058_RS20745at 752.655 kb on - strand, within HMPREF1058_RS20745at 752.655 kb on - strand, within HMPREF1058_RS20745at 753.049 kb on - strand, within HMPREF1058_RS09980at 753.066 kb on - strand, within HMPREF1058_RS09980at 753.166 kb on - strand, within HMPREF1058_RS09980at 753.176 kb on - strand, within HMPREF1058_RS09980at 753.337 kb on - strandat 753.387 kb on - strandat 753.448 kb on + strandat 753.774 kb on + strand, within HMPREF1058_RS09975at 753.774 kb on + strand, within HMPREF1058_RS09975at 753.775 kb on - strand, within HMPREF1058_RS09975at 753.818 kb on - strand, within HMPREF1058_RS09975at 753.821 kb on - strand, within HMPREF1058_RS09975at 753.828 kb on - strand, within HMPREF1058_RS09975

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
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751,400 + +0.1
751,400 + +0.2
751,677 - +0.2
751,845 - -1.0
751,905 + HMPREF1058_RS20740 0.17 +0.1
752,139 - HMPREF1058_RS09985 0.19 -0.4
752,156 - HMPREF1058_RS09985 0.27 +0.3
752,165 + HMPREF1058_RS09985 0.31 -2.0
752,166 - HMPREF1058_RS09985 0.32 -0.8
752,285 + HMPREF1058_RS09985 0.85 -1.3
752,286 - HMPREF1058_RS09985 0.86 +0.6
752,351 + +2.4
752,351 + +0.1
752,368 - +0.1
752,403 - HMPREF1058_RS20745 0.12 -1.1
752,606 + HMPREF1058_RS20745 0.46 -1.6
752,655 - HMPREF1058_RS20745 0.54 -2.7
752,655 - HMPREF1058_RS20745 0.54 -1.3
753,049 - HMPREF1058_RS09980 0.25 +5.7
753,066 - HMPREF1058_RS09980 0.29 +0.2
753,166 - HMPREF1058_RS09980 0.53 -1.2
753,176 - HMPREF1058_RS09980 0.55 -0.9
753,337 - -0.3
753,387 - -0.5
753,448 + +0.2
753,774 + HMPREF1058_RS09975 0.32 +0.1
753,774 + HMPREF1058_RS09975 0.32 -0.2
753,775 - HMPREF1058_RS09975 0.32 +0.8
753,818 - HMPREF1058_RS09975 0.35 +0.6
753,821 - HMPREF1058_RS09975 0.35 -0.3
753,828 - HMPREF1058_RS09975 0.36 -0.1

Or see this region's nucleotide sequence