Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS19210

Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS19215 and HMPREF1058_RS21565 are separated by 81 nucleotidesHMPREF1058_RS21565 and HMPREF1058_RS19210 are separated by 4 nucleotidesHMPREF1058_RS19210 and HMPREF1058_RS19205 overlap by 4 nucleotidesHMPREF1058_RS19205 and HMPREF1058_RS19200 overlap by 10 nucleotidesHMPREF1058_RS19200 and HMPREF1058_RS19195 are separated by 2 nucleotides HMPREF1058_RS19215: HMPREF1058_RS19215 - hypothetical protein, at 1,260 to 1,973 _RS19215 HMPREF1058_RS21565: HMPREF1058_RS21565 - hypothetical protein, at 2,055 to 2,735 _RS21565 HMPREF1058_RS19210: HMPREF1058_RS19210 - hypothetical protein, at 2,740 to 3,141 _RS19210 HMPREF1058_RS19205: HMPREF1058_RS19205 - hypothetical protein, at 3,138 to 3,599 _RS19205 HMPREF1058_RS19200: HMPREF1058_RS19200 - hypothetical protein, at 3,590 to 3,913 _RS19200 HMPREF1058_RS19195: HMPREF1058_RS19195 - hypothetical protein, at 3,916 to 4,233 _RS19195 Position (kb) 2 3 4Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1.790 kb on - strand, within HMPREF1058_RS19215at 1.819 kb on - strand, within HMPREF1058_RS19215at 1.836 kb on + strand, within HMPREF1058_RS19215at 2.126 kb on + strand, within HMPREF1058_RS21565at 2.127 kb on - strand, within HMPREF1058_RS21565at 2.154 kb on - strand, within HMPREF1058_RS21565at 2.155 kb on + strand, within HMPREF1058_RS21565at 2.155 kb on + strand, within HMPREF1058_RS21565at 2.156 kb on - strand, within HMPREF1058_RS21565at 2.157 kb on + strand, within HMPREF1058_RS21565at 2.157 kb on + strand, within HMPREF1058_RS21565at 2.158 kb on - strand, within HMPREF1058_RS21565at 2.158 kb on - strand, within HMPREF1058_RS21565at 2.158 kb on - strand, within HMPREF1058_RS21565at 2.328 kb on - strand, within HMPREF1058_RS21565at 2.380 kb on + strand, within HMPREF1058_RS21565at 2.381 kb on - strand, within HMPREF1058_RS21565at 2.462 kb on - strand, within HMPREF1058_RS21565at 2.542 kb on + strand, within HMPREF1058_RS21565at 2.557 kb on + strand, within HMPREF1058_RS21565at 2.709 kb on - strandat 2.712 kb on - strandat 2.759 kb on + strandat 2.760 kb on - strandat 2.764 kb on + strandat 2.769 kb on + strandat 3.010 kb on + strand, within HMPREF1058_RS19210at 3.010 kb on + strand, within HMPREF1058_RS19210at 3.011 kb on - strand, within HMPREF1058_RS19210at 3.012 kb on + strand, within HMPREF1058_RS19210at 3.104 kb on + strandat 3.104 kb on + strandat 3.108 kb on + strandat 3.109 kb on - strandat 3.109 kb on - strandat 3.164 kb on + strandat 3.217 kb on - strand, within HMPREF1058_RS19205at 3.271 kb on - strand, within HMPREF1058_RS19205at 3.317 kb on + strand, within HMPREF1058_RS19205at 3.357 kb on + strand, within HMPREF1058_RS19205at 3.376 kb on + strand, within HMPREF1058_RS19205at 3.522 kb on + strand, within HMPREF1058_RS19205at 3.600 kb on - strandat 3.611 kb on + strandat 3.611 kb on + strandat 3.695 kb on - strand, within HMPREF1058_RS19200at 3.735 kb on + strand, within HMPREF1058_RS19200at 3.889 kb on + strandat 3.899 kb on - strandat 3.926 kb on - strandat 3.929 kb on + strandat 3.929 kb on + strandat 3.929 kb on + strandat 3.930 kb on - strandat 3.976 kb on - strandat 4.002 kb on + strand, within HMPREF1058_RS19195at 4.003 kb on - strand, within HMPREF1058_RS19195at 4.003 kb on - strand, within HMPREF1058_RS19195

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
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1,790 - HMPREF1058_RS19215 0.74 +0.4
1,819 - HMPREF1058_RS19215 0.78 -0.6
1,836 + HMPREF1058_RS19215 0.81 +0.7
2,126 + HMPREF1058_RS21565 0.10 -2.2
2,127 - HMPREF1058_RS21565 0.11 -0.7
2,154 - HMPREF1058_RS21565 0.15 +1.9
2,155 + HMPREF1058_RS21565 0.15 -0.5
2,155 + HMPREF1058_RS21565 0.15 +0.5
2,156 - HMPREF1058_RS21565 0.15 -1.6
2,157 + HMPREF1058_RS21565 0.15 +2.4
2,157 + HMPREF1058_RS21565 0.15 -0.9
2,158 - HMPREF1058_RS21565 0.15 +0.5
2,158 - HMPREF1058_RS21565 0.15 +0.6
2,158 - HMPREF1058_RS21565 0.15 -3.3
2,328 - HMPREF1058_RS21565 0.40 -1.1
2,380 + HMPREF1058_RS21565 0.48 -0.8
2,381 - HMPREF1058_RS21565 0.48 +1.4
2,462 - HMPREF1058_RS21565 0.60 -1.2
2,542 + HMPREF1058_RS21565 0.72 +0.5
2,557 + HMPREF1058_RS21565 0.74 -0.8
2,709 - -2.4
2,712 - -2.2
2,759 + -0.9
2,760 - +2.1
2,764 + +0.2
2,769 + +0.8
3,010 + HMPREF1058_RS19210 0.67 -2.4
3,010 + HMPREF1058_RS19210 0.67 -2.1
3,011 - HMPREF1058_RS19210 0.67 -0.5
3,012 + HMPREF1058_RS19210 0.68 -0.0
3,104 + +1.3
3,104 + -0.6
3,108 + -0.3
3,109 - -1.4
3,109 - -2.1
3,164 + +1.1
3,217 - HMPREF1058_RS19205 0.17 +0.0
3,271 - HMPREF1058_RS19205 0.29 -0.0
3,317 + HMPREF1058_RS19205 0.39 +1.1
3,357 + HMPREF1058_RS19205 0.47 -2.3
3,376 + HMPREF1058_RS19205 0.52 -0.3
3,522 + HMPREF1058_RS19205 0.83 +1.0
3,600 - +2.1
3,611 + +1.0
3,611 + +0.5
3,695 - HMPREF1058_RS19200 0.32 -0.4
3,735 + HMPREF1058_RS19200 0.45 +0.9
3,889 + -0.5
3,899 - -2.6
3,926 - +0.9
3,929 + -0.8
3,929 + +1.2
3,929 + -2.8
3,930 - -0.5
3,976 - -1.9
4,002 + HMPREF1058_RS19195 0.27 +0.4
4,003 - HMPREF1058_RS19195 0.27 +0.3
4,003 - HMPREF1058_RS19195 0.27 -1.0

Or see this region's nucleotide sequence