Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17950 and HMPREF1058_RS17945 are separated by 12 nucleotides HMPREF1058_RS17945 and HMPREF1058_RS17940 are separated by 152 nucleotides
HMPREF1058_RS17950: HMPREF1058_RS17950 - biotin synthase BioB, at 293,389 to 294,348
_RS17950
HMPREF1058_RS17945: HMPREF1058_RS17945 - hypothetical protein, at 294,361 to 294,726
_RS17945
HMPREF1058_RS17940: HMPREF1058_RS17940 - alpha-amylase, at 294,879 to 296,291
_RS17940
Position (kb) 294
295 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 293.370 kb on - strand at 293.375 kb on - strand at 293.414 kb on - strand at 293.447 kb on - strand at 293.447 kb on - strand at 293.481 kb on + strand at 293.492 kb on + strand, within HMPREF1058_RS17950 at 293.492 kb on + strand, within HMPREF1058_RS17950 at 293.493 kb on - strand, within HMPREF1058_RS17950 at 293.493 kb on - strand, within HMPREF1058_RS17950 at 293.493 kb on - strand, within HMPREF1058_RS17950 at 293.646 kb on + strand, within HMPREF1058_RS17950 at 293.665 kb on - strand, within HMPREF1058_RS17950 at 293.678 kb on - strand, within HMPREF1058_RS17950 at 293.698 kb on - strand, within HMPREF1058_RS17950 at 293.758 kb on + strand, within HMPREF1058_RS17950 at 293.820 kb on + strand, within HMPREF1058_RS17950 at 293.820 kb on + strand, within HMPREF1058_RS17950 at 293.821 kb on - strand, within HMPREF1058_RS17950 at 293.828 kb on - strand, within HMPREF1058_RS17950 at 293.863 kb on - strand, within HMPREF1058_RS17950 at 293.863 kb on - strand, within HMPREF1058_RS17950 at 293.966 kb on + strand, within HMPREF1058_RS17950 at 294.104 kb on + strand, within HMPREF1058_RS17950 at 294.248 kb on + strand, within HMPREF1058_RS17950 at 294.350 kb on + strand at 294.350 kb on + strand at 294.350 kb on + strand at 294.350 kb on + strand at 294.351 kb on - strand at 294.518 kb on + strand, within HMPREF1058_RS17945 at 294.519 kb on - strand, within HMPREF1058_RS17945 at 294.630 kb on + strand, within HMPREF1058_RS17945 at 294.631 kb on - strand, within HMPREF1058_RS17945 at 294.634 kb on + strand, within HMPREF1058_RS17945 at 294.635 kb on - strand, within HMPREF1058_RS17945 at 294.635 kb on - strand, within HMPREF1058_RS17945 at 294.635 kb on - strand, within HMPREF1058_RS17945 at 294.651 kb on + strand, within HMPREF1058_RS17945 at 294.652 kb on - strand, within HMPREF1058_RS17945 at 294.660 kb on + strand, within HMPREF1058_RS17945 at 294.661 kb on - strand, within HMPREF1058_RS17945 at 294.666 kb on - strand, within HMPREF1058_RS17945 at 294.694 kb on + strand at 294.699 kb on + strand at 294.700 kb on - strand at 294.700 kb on - strand at 294.785 kb on - strand at 294.789 kb on - strand at 294.819 kb on + strand at 294.865 kb on - strand at 294.865 kb on - strand at 294.867 kb on - strand at 294.867 kb on - strand at 294.872 kb on - strand at 295.110 kb on - strand, within HMPREF1058_RS17940 at 295.142 kb on + strand, within HMPREF1058_RS17940 at 295.165 kb on + strand, within HMPREF1058_RS17940 at 295.165 kb on + strand, within HMPREF1058_RS17940 at 295.166 kb on - strand, within HMPREF1058_RS17940 at 295.166 kb on - strand, within HMPREF1058_RS17940 at 295.166 kb on - strand, within HMPREF1058_RS17940 at 295.196 kb on - strand, within HMPREF1058_RS17940 at 295.253 kb on + strand, within HMPREF1058_RS17940 at 295.327 kb on + strand, within HMPREF1058_RS17940 at 295.406 kb on + strand, within HMPREF1058_RS17940 at 295.406 kb on + strand, within HMPREF1058_RS17940 at 295.475 kb on + strand, within HMPREF1058_RS17940 at 295.620 kb on + strand, within HMPREF1058_RS17940 at 295.623 kb on - strand, within HMPREF1058_RS17940 at 295.624 kb on + strand, within HMPREF1058_RS17940 at 295.624 kb on + strand, within HMPREF1058_RS17940 at 295.664 kb on + strand, within HMPREF1058_RS17940
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source remove 293,370 - -0.0 293,375 - -1.8 293,414 - -0.5 293,447 - +1.2 293,447 - -1.3 293,481 + -1.3 293,492 + HMPREF1058_RS17950 0.11 -1.0 293,492 + HMPREF1058_RS17950 0.11 -3.4 293,493 - HMPREF1058_RS17950 0.11 -0.3 293,493 - HMPREF1058_RS17950 0.11 -1.9 293,493 - HMPREF1058_RS17950 0.11 -3.2 293,646 + HMPREF1058_RS17950 0.27 -1.1 293,665 - HMPREF1058_RS17950 0.29 +0.7 293,678 - HMPREF1058_RS17950 0.30 +2.3 293,698 - HMPREF1058_RS17950 0.32 -2.3 293,758 + HMPREF1058_RS17950 0.38 -1.9 293,820 + HMPREF1058_RS17950 0.45 -4.6 293,820 + HMPREF1058_RS17950 0.45 -1.7 293,821 - HMPREF1058_RS17950 0.45 -2.4 293,828 - HMPREF1058_RS17950 0.46 +0.5 293,863 - HMPREF1058_RS17950 0.49 +0.8 293,863 - HMPREF1058_RS17950 0.49 -3.0 293,966 + HMPREF1058_RS17950 0.60 -2.2 294,104 + HMPREF1058_RS17950 0.74 +0.5 294,248 + HMPREF1058_RS17950 0.89 -2.5 294,350 + -1.0 294,350 + -2.7 294,350 + -0.3 294,350 + +0.7 294,351 - -2.0 294,518 + HMPREF1058_RS17945 0.43 -2.0 294,519 - HMPREF1058_RS17945 0.43 -0.7 294,630 + HMPREF1058_RS17945 0.73 -3.0 294,631 - HMPREF1058_RS17945 0.74 -2.1 294,634 + HMPREF1058_RS17945 0.75 -2.0 294,635 - HMPREF1058_RS17945 0.75 -3.2 294,635 - HMPREF1058_RS17945 0.75 -2.0 294,635 - HMPREF1058_RS17945 0.75 -2.3 294,651 + HMPREF1058_RS17945 0.79 -1.1 294,652 - HMPREF1058_RS17945 0.80 -1.0 294,660 + HMPREF1058_RS17945 0.82 -2.8 294,661 - HMPREF1058_RS17945 0.82 -1.0 294,666 - HMPREF1058_RS17945 0.83 -0.6 294,694 + -1.3 294,699 + -1.2 294,700 - -2.3 294,700 - -0.6 294,785 - -0.6 294,789 - -0.0 294,819 + +0.5 294,865 - -0.3 294,865 - +0.5 294,867 - -0.6 294,867 - +0.1 294,872 - +0.1 295,110 - HMPREF1058_RS17940 0.16 -2.5 295,142 + HMPREF1058_RS17940 0.19 -3.6 295,165 + HMPREF1058_RS17940 0.20 -1.2 295,165 + HMPREF1058_RS17940 0.20 -1.4 295,166 - HMPREF1058_RS17940 0.20 -2.6 295,166 - HMPREF1058_RS17940 0.20 -3.3 295,166 - HMPREF1058_RS17940 0.20 -1.7 295,196 - HMPREF1058_RS17940 0.22 -0.7 295,253 + HMPREF1058_RS17940 0.26 -2.5 295,327 + HMPREF1058_RS17940 0.32 -3.4 295,406 + HMPREF1058_RS17940 0.37 -0.3 295,406 + HMPREF1058_RS17940 0.37 -3.4 295,475 + HMPREF1058_RS17940 0.42 -2.0 295,620 + HMPREF1058_RS17940 0.52 -1.4 295,623 - HMPREF1058_RS17940 0.53 -2.2 295,624 + HMPREF1058_RS17940 0.53 -3.6 295,624 + HMPREF1058_RS17940 0.53 -1.2 295,664 + HMPREF1058_RS17940 0.56 -1.2
Or see this region's nucleotide sequence