Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS0119345 and HMPREF1058_RS17540 overlap by 59 nucleotides HMPREF1058_RS17540 and HMPREF1058_RS17535 are separated by 485 nucleotides HMPREF1058_RS17535 and HMPREF1058_RS17530 are separated by 11 nucleotides
HMPREF1058_RS0119345: HMPREF1058_RS0119345 - 6-bladed beta-propeller, at 402,681 to 403,445
_RS0119345
HMPREF1058_RS17540: HMPREF1058_RS17540 - 6-bladed beta-propeller, at 403,387 to 403,839
_RS17540
HMPREF1058_RS17535: HMPREF1058_RS17535 - IS21-like element helper ATPase IstB, at 404,325 to 405,113
_RS17535
HMPREF1058_RS17530: HMPREF1058_RS17530 - IS21 family transposase, at 405,125 to 406,690
_RS17530
Position (kb) 404
405
406 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 403.370 kb on + strand at 403.380 kb on + strand at 403.381 kb on - strand at 403.388 kb on + strand at 403.391 kb on - strand at 403.419 kb on + strand at 403.422 kb on + strand at 403.424 kb on + strand at 403.424 kb on + strand at 403.424 kb on + strand at 403.424 kb on + strand at 403.425 kb on - strand at 403.426 kb on + strand at 403.427 kb on - strand at 403.427 kb on - strand at 403.428 kb on + strand at 403.429 kb on - strand at 403.429 kb on - strand at 403.429 kb on - strand at 403.430 kb on + strand at 403.431 kb on - strand at 403.464 kb on + strand, within HMPREF1058_RS17540 at 403.464 kb on + strand, within HMPREF1058_RS17540 at 403.466 kb on + strand, within HMPREF1058_RS17540 at 403.504 kb on + strand, within HMPREF1058_RS17540 at 403.550 kb on + strand, within HMPREF1058_RS17540 at 403.551 kb on - strand, within HMPREF1058_RS17540 at 403.703 kb on - strand, within HMPREF1058_RS17540 at 403.711 kb on + strand, within HMPREF1058_RS17540 at 403.712 kb on - strand, within HMPREF1058_RS17540 at 403.765 kb on - strand, within HMPREF1058_RS17540 at 403.767 kb on + strand, within HMPREF1058_RS17540 at 403.768 kb on - strand, within HMPREF1058_RS17540 at 403.770 kb on + strand, within HMPREF1058_RS17540 at 403.801 kb on + strand at 403.801 kb on + strand at 403.804 kb on - strand at 403.812 kb on - strand at 403.872 kb on + strand at 403.893 kb on + strand at 403.916 kb on - strand at 403.993 kb on - strand at 403.993 kb on - strand at 403.997 kb on - strand at 404.038 kb on + strand at 404.038 kb on + strand at 404.039 kb on - strand at 404.039 kb on - strand at 404.044 kb on - strand at 404.049 kb on + strand at 404.062 kb on - strand at 404.086 kb on - strand at 404.086 kb on - strand at 404.115 kb on - strand at 404.162 kb on + strand at 404.173 kb on + strand at 404.624 kb on + strand, within HMPREF1058_RS17535 at 404.631 kb on + strand, within HMPREF1058_RS17535 at 405.529 kb on - strand, within HMPREF1058_RS17530
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source remove 403,370 + +0.5 403,380 + -0.2 403,381 - -0.3 403,388 + -1.9 403,391 - +0.2 403,419 + +1.2 403,422 + -0.3 403,424 + +1.1 403,424 + -3.2 403,424 + -0.1 403,424 + -0.6 403,425 - +0.2 403,426 + +0.6 403,427 - -0.0 403,427 - -0.4 403,428 + +0.2 403,429 - -0.6 403,429 - -1.0 403,429 - -0.2 403,430 + -2.1 403,431 - +2.4 403,464 + HMPREF1058_RS17540 0.17 -0.6 403,464 + HMPREF1058_RS17540 0.17 -0.4 403,466 + HMPREF1058_RS17540 0.17 -1.2 403,504 + HMPREF1058_RS17540 0.26 +0.8 403,550 + HMPREF1058_RS17540 0.36 +0.9 403,551 - HMPREF1058_RS17540 0.36 +0.1 403,703 - HMPREF1058_RS17540 0.70 +1.0 403,711 + HMPREF1058_RS17540 0.72 -1.9 403,712 - HMPREF1058_RS17540 0.72 -1.5 403,765 - HMPREF1058_RS17540 0.83 -0.6 403,767 + HMPREF1058_RS17540 0.84 -0.6 403,768 - HMPREF1058_RS17540 0.84 +0.7 403,770 + HMPREF1058_RS17540 0.85 +0.5 403,801 + -2.1 403,801 + -1.3 403,804 - -2.1 403,812 - -0.4 403,872 + +0.6 403,893 + -0.8 403,916 - +1.3 403,993 - -1.7 403,993 - -1.1 403,997 - +0.5 404,038 + -1.7 404,038 + +1.0 404,039 - -0.1 404,039 - -0.6 404,044 - +0.8 404,049 + -1.9 404,062 - +0.8 404,086 - +0.8 404,086 - +0.5 404,115 - +1.2 404,162 + +1.8 404,173 + -0.2 404,624 + HMPREF1058_RS17535 0.38 -2.8 404,631 + HMPREF1058_RS17535 0.39 -2.9 405,529 - HMPREF1058_RS17530 0.26 +0.3
Or see this region's nucleotide sequence