Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17165 and HMPREF1058_RS17160 are separated by 13 nucleotides HMPREF1058_RS17160 and HMPREF1058_RS17155 are separated by 4 nucleotides HMPREF1058_RS17155 and HMPREF1058_RS17150 are separated by 14 nucleotides HMPREF1058_RS17150 and HMPREF1058_RS17145 overlap by 77 nucleotides HMPREF1058_RS17145 and HMPREF1058_RS17140 are separated by 165 nucleotides HMPREF1058_RS17140 and HMPREF1058_RS17135 overlap by 4 nucleotides
HMPREF1058_RS17165: HMPREF1058_RS17165 - M3 family metallopeptidase, at 510,650 to 512,692
_RS17165
HMPREF1058_RS17160: HMPREF1058_RS17160 - DUF4847 family protein, at 512,706 to 513,200
_RS17160
HMPREF1058_RS17155: HMPREF1058_RS17155 - dCMP deaminase family protein, at 513,205 to 513,639
_RS17155
HMPREF1058_RS17150: HMPREF1058_RS17150 - S41 family peptidase, at 513,654 to 515,402
_RS17150
HMPREF1058_RS17145: HMPREF1058_RS17145 - 5-formyltetrahydrofolate cyclo-ligase, at 515,326 to 515,856
_RS17145
HMPREF1058_RS17140: HMPREF1058_RS17140 - DUF721 domain-containing protein, at 516,022 to 516,312
_RS17140
HMPREF1058_RS17135: HMPREF1058_RS17135 - DNA replication and repair protein RecF, at 516,309 to 517,424
_RS17135
Position (kb) 513
514
515
516 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 512.714 kb on - strand at 512.714 kb on - strand at 512.727 kb on + strand at 512.729 kb on + strand at 512.729 kb on + strand at 512.729 kb on + strand at 512.730 kb on - strand at 512.731 kb on + strand at 512.734 kb on + strand at 512.753 kb on - strand at 512.865 kb on + strand, within HMPREF1058_RS17160 at 512.866 kb on - strand, within HMPREF1058_RS17160 at 512.866 kb on - strand, within HMPREF1058_RS17160 at 512.966 kb on + strand, within HMPREF1058_RS17160 at 513.112 kb on + strand, within HMPREF1058_RS17160 at 513.145 kb on + strand, within HMPREF1058_RS17160 at 513.185 kb on + strand at 513.185 kb on + strand at 513.185 kb on + strand at 513.186 kb on - strand at 513.186 kb on - strand at 513.203 kb on + strand at 513.204 kb on - strand at 513.247 kb on + strand at 513.264 kb on + strand, within HMPREF1058_RS17155 at 513.283 kb on + strand, within HMPREF1058_RS17155 at 513.347 kb on - strand, within HMPREF1058_RS17155 at 513.414 kb on - strand, within HMPREF1058_RS17155 at 513.446 kb on + strand, within HMPREF1058_RS17155 at 513.484 kb on + strand, within HMPREF1058_RS17155 at 513.485 kb on - strand, within HMPREF1058_RS17155 at 513.485 kb on - strand, within HMPREF1058_RS17155 at 513.506 kb on + strand, within HMPREF1058_RS17155 at 513.507 kb on - strand, within HMPREF1058_RS17155 at 513.607 kb on - strand at 513.648 kb on - strand at 513.653 kb on + strand at 513.700 kb on + strand at 513.763 kb on - strand at 513.776 kb on + strand at 513.829 kb on + strand, within HMPREF1058_RS17150 at 513.830 kb on - strand, within HMPREF1058_RS17150 at 513.833 kb on + strand, within HMPREF1058_RS17150 at 513.833 kb on + strand, within HMPREF1058_RS17150 at 513.834 kb on - strand, within HMPREF1058_RS17150 at 513.834 kb on - strand, within HMPREF1058_RS17150 at 513.866 kb on + strand, within HMPREF1058_RS17150 at 513.866 kb on + strand, within HMPREF1058_RS17150 at 513.907 kb on - strand, within HMPREF1058_RS17150 at 513.980 kb on + strand, within HMPREF1058_RS17150 at 513.995 kb on + strand, within HMPREF1058_RS17150 at 514.006 kb on + strand, within HMPREF1058_RS17150 at 514.006 kb on + strand, within HMPREF1058_RS17150 at 514.069 kb on + strand, within HMPREF1058_RS17150 at 514.069 kb on + strand, within HMPREF1058_RS17150 at 514.113 kb on + strand, within HMPREF1058_RS17150 at 514.113 kb on + strand, within HMPREF1058_RS17150 at 514.237 kb on + strand, within HMPREF1058_RS17150 at 514.277 kb on - strand, within HMPREF1058_RS17150 at 514.392 kb on + strand, within HMPREF1058_RS17150 at 514.392 kb on + strand, within HMPREF1058_RS17150 at 514.393 kb on - strand, within HMPREF1058_RS17150 at 514.394 kb on + strand, within HMPREF1058_RS17150 at 514.394 kb on + strand, within HMPREF1058_RS17150 at 514.394 kb on + strand, within HMPREF1058_RS17150 at 514.395 kb on - strand, within HMPREF1058_RS17150 at 514.452 kb on + strand, within HMPREF1058_RS17150 at 514.488 kb on - strand, within HMPREF1058_RS17150 at 514.640 kb on - strand, within HMPREF1058_RS17150 at 514.649 kb on + strand, within HMPREF1058_RS17150 at 514.698 kb on + strand, within HMPREF1058_RS17150 at 514.698 kb on + strand, within HMPREF1058_RS17150 at 514.731 kb on + strand, within HMPREF1058_RS17150 at 514.731 kb on + strand, within HMPREF1058_RS17150 at 514.862 kb on - strand, within HMPREF1058_RS17150 at 514.862 kb on - strand, within HMPREF1058_RS17150 at 514.864 kb on - strand, within HMPREF1058_RS17150 at 514.908 kb on - strand, within HMPREF1058_RS17150 at 514.930 kb on - strand, within HMPREF1058_RS17150 at 515.055 kb on - strand, within HMPREF1058_RS17150 at 515.110 kb on + strand, within HMPREF1058_RS17150 at 515.111 kb on - strand, within HMPREF1058_RS17150 at 515.111 kb on - strand, within HMPREF1058_RS17150 at 515.111 kb on - strand, within HMPREF1058_RS17150 at 515.118 kb on + strand, within HMPREF1058_RS17150 at 515.167 kb on - strand, within HMPREF1058_RS17150 at 515.167 kb on - strand, within HMPREF1058_RS17150 at 515.190 kb on + strand, within HMPREF1058_RS17150 at 515.190 kb on + strand, within HMPREF1058_RS17150 at 515.190 kb on + strand, within HMPREF1058_RS17150 at 515.190 kb on + strand, within HMPREF1058_RS17150 at 515.191 kb on - strand, within HMPREF1058_RS17150 at 515.192 kb on - strand, within HMPREF1058_RS17150 at 515.194 kb on + strand, within HMPREF1058_RS17150 at 515.194 kb on + strand, within HMPREF1058_RS17150 at 515.195 kb on - strand, within HMPREF1058_RS17150 at 515.195 kb on - strand, within HMPREF1058_RS17150 at 515.242 kb on + strand at 515.287 kb on + strand at 515.287 kb on + strand at 515.316 kb on - strand at 515.376 kb on - strand at 515.453 kb on - strand, within HMPREF1058_RS17145 at 515.474 kb on + strand, within HMPREF1058_RS17145 at 515.475 kb on - strand, within HMPREF1058_RS17145 at 515.475 kb on - strand, within HMPREF1058_RS17145 at 515.565 kb on + strand, within HMPREF1058_RS17145 at 515.600 kb on - strand, within HMPREF1058_RS17145 at 515.632 kb on - strand, within HMPREF1058_RS17145 at 515.632 kb on - strand, within HMPREF1058_RS17145 at 515.648 kb on + strand, within HMPREF1058_RS17145 at 515.729 kb on + strand, within HMPREF1058_RS17145 at 515.755 kb on - strand, within HMPREF1058_RS17145 at 515.756 kb on + strand, within HMPREF1058_RS17145 at 515.756 kb on + strand, within HMPREF1058_RS17145 at 515.756 kb on + strand, within HMPREF1058_RS17145 at 515.756 kb on + strand, within HMPREF1058_RS17145 at 515.757 kb on - strand, within HMPREF1058_RS17145 at 515.757 kb on - strand, within HMPREF1058_RS17145 at 515.757 kb on - strand, within HMPREF1058_RS17145 at 515.757 kb on - strand, within HMPREF1058_RS17145 at 515.760 kb on + strand, within HMPREF1058_RS17145 at 515.762 kb on + strand, within HMPREF1058_RS17145 at 515.762 kb on + strand, within HMPREF1058_RS17145 at 515.762 kb on + strand, within HMPREF1058_RS17145 at 515.762 kb on + strand, within HMPREF1058_RS17145 at 515.762 kb on + strand, within HMPREF1058_RS17145 at 515.762 kb on + strand, within HMPREF1058_RS17145 at 515.763 kb on - strand, within HMPREF1058_RS17145 at 515.763 kb on - strand, within HMPREF1058_RS17145 at 515.763 kb on - strand, within HMPREF1058_RS17145 at 515.855 kb on - strand at 515.884 kb on - strand at 515.888 kb on + strand at 515.894 kb on + strand at 515.973 kb on - strand at 515.973 kb on - strand at 515.973 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source remove 512,714 - -0.2 512,714 - -0.8 512,727 + +0.0 512,729 + -0.6 512,729 + +2.2 512,729 + -0.5 512,730 - -1.0 512,731 + -0.5 512,734 + -1.0 512,753 - -0.7 512,865 + HMPREF1058_RS17160 0.32 +1.1 512,866 - HMPREF1058_RS17160 0.32 -0.8 512,866 - HMPREF1058_RS17160 0.32 -0.7 512,966 + HMPREF1058_RS17160 0.53 -0.6 513,112 + HMPREF1058_RS17160 0.82 +0.4 513,145 + HMPREF1058_RS17160 0.89 +0.3 513,185 + -0.3 513,185 + -2.0 513,185 + -1.4 513,186 - -2.6 513,186 - -0.4 513,203 + -2.3 513,204 - -1.1 513,247 + -1.1 513,264 + HMPREF1058_RS17155 0.14 -0.5 513,283 + HMPREF1058_RS17155 0.18 -0.8 513,347 - HMPREF1058_RS17155 0.33 +0.2 513,414 - HMPREF1058_RS17155 0.48 -1.5 513,446 + HMPREF1058_RS17155 0.55 +0.4 513,484 + HMPREF1058_RS17155 0.64 -0.7 513,485 - HMPREF1058_RS17155 0.64 -2.3 513,485 - HMPREF1058_RS17155 0.64 +0.4 513,506 + HMPREF1058_RS17155 0.69 +1.3 513,507 - HMPREF1058_RS17155 0.69 -2.7 513,607 - -2.6 513,648 - -2.2 513,653 + -1.8 513,700 + -1.6 513,763 - -1.6 513,776 + -1.2 513,829 + HMPREF1058_RS17150 0.10 -1.4 513,830 - HMPREF1058_RS17150 0.10 -2.6 513,833 + HMPREF1058_RS17150 0.10 -1.4 513,833 + HMPREF1058_RS17150 0.10 -2.2 513,834 - HMPREF1058_RS17150 0.10 -0.3 513,834 - HMPREF1058_RS17150 0.10 -4.1 513,866 + HMPREF1058_RS17150 0.12 -2.2 513,866 + HMPREF1058_RS17150 0.12 +0.0 513,907 - HMPREF1058_RS17150 0.14 -1.7 513,980 + HMPREF1058_RS17150 0.19 -0.8 513,995 + HMPREF1058_RS17150 0.19 -1.3 514,006 + HMPREF1058_RS17150 0.20 -2.0 514,006 + HMPREF1058_RS17150 0.20 -1.4 514,069 + HMPREF1058_RS17150 0.24 -2.6 514,069 + HMPREF1058_RS17150 0.24 -1.7 514,113 + HMPREF1058_RS17150 0.26 -2.2 514,113 + HMPREF1058_RS17150 0.26 -1.2 514,237 + HMPREF1058_RS17150 0.33 -1.8 514,277 - HMPREF1058_RS17150 0.36 -1.8 514,392 + HMPREF1058_RS17150 0.42 -1.6 514,392 + HMPREF1058_RS17150 0.42 -2.4 514,393 - HMPREF1058_RS17150 0.42 -3.1 514,394 + HMPREF1058_RS17150 0.42 -1.1 514,394 + HMPREF1058_RS17150 0.42 -2.3 514,394 + HMPREF1058_RS17150 0.42 -0.7 514,395 - HMPREF1058_RS17150 0.42 +0.4 514,452 + HMPREF1058_RS17150 0.46 -1.3 514,488 - HMPREF1058_RS17150 0.48 -0.3 514,640 - HMPREF1058_RS17150 0.56 +0.1 514,649 + HMPREF1058_RS17150 0.57 -2.1 514,698 + HMPREF1058_RS17150 0.60 -1.2 514,698 + HMPREF1058_RS17150 0.60 -2.2 514,731 + HMPREF1058_RS17150 0.62 -3.6 514,731 + HMPREF1058_RS17150 0.62 -3.1 514,862 - HMPREF1058_RS17150 0.69 -3.0 514,862 - HMPREF1058_RS17150 0.69 -1.9 514,864 - HMPREF1058_RS17150 0.69 -1.1 514,908 - HMPREF1058_RS17150 0.72 -1.8 514,930 - HMPREF1058_RS17150 0.73 -3.6 515,055 - HMPREF1058_RS17150 0.80 -2.3 515,110 + HMPREF1058_RS17150 0.83 -1.3 515,111 - HMPREF1058_RS17150 0.83 -1.6 515,111 - HMPREF1058_RS17150 0.83 -3.2 515,111 - HMPREF1058_RS17150 0.83 -1.2 515,118 + HMPREF1058_RS17150 0.84 -1.8 515,167 - HMPREF1058_RS17150 0.87 -1.8 515,167 - HMPREF1058_RS17150 0.87 -3.1 515,190 + HMPREF1058_RS17150 0.88 -1.6 515,190 + HMPREF1058_RS17150 0.88 -0.7 515,190 + HMPREF1058_RS17150 0.88 -1.7 515,190 + HMPREF1058_RS17150 0.88 -2.5 515,191 - HMPREF1058_RS17150 0.88 -2.4 515,192 - HMPREF1058_RS17150 0.88 +0.1 515,194 + HMPREF1058_RS17150 0.88 -0.1 515,194 + HMPREF1058_RS17150 0.88 -0.3 515,195 - HMPREF1058_RS17150 0.88 -1.4 515,195 - HMPREF1058_RS17150 0.88 -1.6 515,242 + -0.5 515,287 + -0.4 515,287 + -1.1 515,316 - -1.4 515,376 - +1.4 515,453 - HMPREF1058_RS17145 0.24 -0.9 515,474 + HMPREF1058_RS17145 0.28 -1.7 515,475 - HMPREF1058_RS17145 0.28 +1.2 515,475 - HMPREF1058_RS17145 0.28 +0.6 515,565 + HMPREF1058_RS17145 0.45 -1.7 515,600 - HMPREF1058_RS17145 0.52 -0.6 515,632 - HMPREF1058_RS17145 0.58 -0.1 515,632 - HMPREF1058_RS17145 0.58 -0.9 515,648 + HMPREF1058_RS17145 0.61 -1.0 515,729 + HMPREF1058_RS17145 0.76 -0.5 515,755 - HMPREF1058_RS17145 0.81 -2.7 515,756 + HMPREF1058_RS17145 0.81 +0.1 515,756 + HMPREF1058_RS17145 0.81 +0.7 515,756 + HMPREF1058_RS17145 0.81 -1.1 515,756 + HMPREF1058_RS17145 0.81 -0.9 515,757 - HMPREF1058_RS17145 0.81 -0.7 515,757 - HMPREF1058_RS17145 0.81 +0.9 515,757 - HMPREF1058_RS17145 0.81 -0.4 515,757 - HMPREF1058_RS17145 0.81 +0.4 515,760 + HMPREF1058_RS17145 0.82 -2.3 515,762 + HMPREF1058_RS17145 0.82 -0.4 515,762 + HMPREF1058_RS17145 0.82 -1.2 515,762 + HMPREF1058_RS17145 0.82 -1.0 515,762 + HMPREF1058_RS17145 0.82 -0.3 515,762 + HMPREF1058_RS17145 0.82 -0.5 515,762 + HMPREF1058_RS17145 0.82 -1.8 515,763 - HMPREF1058_RS17145 0.82 -0.0 515,763 - HMPREF1058_RS17145 0.82 +0.4 515,763 - HMPREF1058_RS17145 0.82 -0.5 515,855 - +0.5 515,884 - -0.5 515,888 + -0.2 515,894 + -0.6 515,973 - -0.5 515,973 - +0.2 515,973 - -0.8
Or see this region's nucleotide sequence