Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS16835

Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS16840 and HMPREF1058_RS16835 are separated by 127 nucleotidesHMPREF1058_RS16835 and HMPREF1058_RS16830 are separated by 34 nucleotidesHMPREF1058_RS16830 and HMPREF1058_RS16825 overlap by 1 nucleotides HMPREF1058_RS16840: HMPREF1058_RS16840 - energy transducer TonB, at 582,895 to 583,980 _RS16840 HMPREF1058_RS16835: HMPREF1058_RS16835 - ketol-acid reductoisomerase, at 584,108 to 585,151 _RS16835 HMPREF1058_RS16830: HMPREF1058_RS16830 - acyl-ACP thioesterase, at 585,186 to 585,929 _RS16830 HMPREF1058_RS16825: HMPREF1058_RS16825 - acetolactate synthase small subunit, at 585,929 to 586,483 _RS16825 Position (kb) 584 585 586Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 583.162 kb on - strand, within HMPREF1058_RS16840at 583.206 kb on + strand, within HMPREF1058_RS16840at 583.207 kb on - strand, within HMPREF1058_RS16840at 583.207 kb on - strand, within HMPREF1058_RS16840at 583.207 kb on - strand, within HMPREF1058_RS16840at 583.256 kb on + strand, within HMPREF1058_RS16840at 583.261 kb on + strand, within HMPREF1058_RS16840at 583.266 kb on - strandat 583.266 kb on - strand, within HMPREF1058_RS16840at 583.266 kb on - strand, within HMPREF1058_RS16840at 583.313 kb on + strand, within HMPREF1058_RS16840at 583.313 kb on + strand, within HMPREF1058_RS16840at 583.314 kb on - strand, within HMPREF1058_RS16840at 583.372 kb on - strand, within HMPREF1058_RS16840at 583.375 kb on + strand, within HMPREF1058_RS16840at 583.375 kb on + strand, within HMPREF1058_RS16840at 583.376 kb on - strand, within HMPREF1058_RS16840at 583.465 kb on - strand, within HMPREF1058_RS16840at 583.527 kb on + strand, within HMPREF1058_RS16840at 583.614 kb on - strand, within HMPREF1058_RS16840at 583.614 kb on - strand, within HMPREF1058_RS16840at 583.626 kb on + strand, within HMPREF1058_RS16840at 583.650 kb on + strand, within HMPREF1058_RS16840at 583.650 kb on + strand, within HMPREF1058_RS16840at 583.651 kb on - strand, within HMPREF1058_RS16840at 583.654 kb on - strand, within HMPREF1058_RS16840at 583.654 kb on - strand, within HMPREF1058_RS16840at 583.654 kb on - strand, within HMPREF1058_RS16840at 583.654 kb on - strand, within HMPREF1058_RS16840at 583.657 kb on + strand, within HMPREF1058_RS16840at 583.755 kb on - strand, within HMPREF1058_RS16840at 583.759 kb on - strand, within HMPREF1058_RS16840at 583.794 kb on + strand, within HMPREF1058_RS16840at 583.843 kb on + strand, within HMPREF1058_RS16840at 583.843 kb on + strand, within HMPREF1058_RS16840at 583.892 kb on + strandat 583.893 kb on - strandat 583.909 kb on - strandat 583.942 kb on + strandat 583.972 kb on - strandat 583.974 kb on + strandat 583.975 kb on - strandat 584.023 kb on + strandat 584.030 kb on + strandat 584.045 kb on + strandat 584.045 kb on + strandat 584.045 kb on + strandat 584.046 kb on - strandat 584.046 kb on - strandat 584.046 kb on - strandat 584.048 kb on - strandat 584.048 kb on - strandat 584.052 kb on - strandat 584.090 kb on + strandat 584.093 kb on - strandat 584.093 kb on - strandat 584.095 kb on + strandat 584.095 kb on + strandat 584.095 kb on + strandat 584.096 kb on - strandat 584.096 kb on - strandat 584.096 kb on - strandat 584.102 kb on + strandat 584.106 kb on + strandat 584.107 kb on - strandat 584.110 kb on - strandat 584.215 kb on + strand, within HMPREF1058_RS16835at 584.221 kb on + strand, within HMPREF1058_RS16835at 584.270 kb on + strand, within HMPREF1058_RS16835at 584.282 kb on + strand, within HMPREF1058_RS16835at 584.344 kb on + strand, within HMPREF1058_RS16835at 584.344 kb on + strand, within HMPREF1058_RS16835at 584.345 kb on - strand, within HMPREF1058_RS16835at 584.353 kb on + strand, within HMPREF1058_RS16835at 584.358 kb on + strand, within HMPREF1058_RS16835at 584.359 kb on - strand, within HMPREF1058_RS16835at 584.359 kb on - strand, within HMPREF1058_RS16835at 584.359 kb on - strand, within HMPREF1058_RS16835at 584.408 kb on + strand, within HMPREF1058_RS16835at 584.465 kb on + strand, within HMPREF1058_RS16835at 584.465 kb on + strand, within HMPREF1058_RS16835at 584.602 kb on + strand, within HMPREF1058_RS16835at 584.605 kb on + strand, within HMPREF1058_RS16835at 584.641 kb on + strand, within HMPREF1058_RS16835at 584.748 kb on - strand, within HMPREF1058_RS16835at 584.755 kb on + strand, within HMPREF1058_RS16835at 584.845 kb on + strand, within HMPREF1058_RS16835at 584.845 kb on + strand, within HMPREF1058_RS16835at 584.845 kb on + strand, within HMPREF1058_RS16835at 584.984 kb on + strand, within HMPREF1058_RS16835at 584.985 kb on - strand, within HMPREF1058_RS16835at 585.187 kb on + strandat 585.196 kb on - strandat 585.244 kb on - strandat 585.246 kb on - strandat 585.250 kb on + strandat 585.250 kb on + strandat 585.291 kb on - strand, within HMPREF1058_RS16830at 585.298 kb on + strand, within HMPREF1058_RS16830at 585.299 kb on - strand, within HMPREF1058_RS16830at 585.302 kb on - strand, within HMPREF1058_RS16830at 585.313 kb on - strand, within HMPREF1058_RS16830at 585.316 kb on + strand, within HMPREF1058_RS16830at 585.362 kb on + strand, within HMPREF1058_RS16830at 585.387 kb on + strand, within HMPREF1058_RS16830at 585.387 kb on + strand, within HMPREF1058_RS16830at 585.388 kb on - strand, within HMPREF1058_RS16830at 585.388 kb on - strand, within HMPREF1058_RS16830at 585.389 kb on + strand, within HMPREF1058_RS16830at 585.390 kb on - strand, within HMPREF1058_RS16830at 585.392 kb on - strand, within HMPREF1058_RS16830at 585.396 kb on - strand, within HMPREF1058_RS16830at 585.396 kb on - strand, within HMPREF1058_RS16830at 585.399 kb on - strand, within HMPREF1058_RS16830at 585.399 kb on - strand, within HMPREF1058_RS16830at 585.480 kb on - strand, within HMPREF1058_RS16830at 585.496 kb on - strand, within HMPREF1058_RS16830at 585.497 kb on + strand, within HMPREF1058_RS16830at 585.516 kb on + strand, within HMPREF1058_RS16830at 585.520 kb on + strand, within HMPREF1058_RS16830at 585.521 kb on - strand, within HMPREF1058_RS16830at 585.521 kb on - strand, within HMPREF1058_RS16830at 585.521 kb on - strand, within HMPREF1058_RS16830at 585.531 kb on - strand, within HMPREF1058_RS16830at 585.533 kb on + strand, within HMPREF1058_RS16830at 585.657 kb on - strand, within HMPREF1058_RS16830at 585.707 kb on - strand, within HMPREF1058_RS16830at 585.719 kb on + strand, within HMPREF1058_RS16830at 585.720 kb on - strand, within HMPREF1058_RS16830at 585.732 kb on + strand, within HMPREF1058_RS16830at 585.758 kb on + strand, within HMPREF1058_RS16830at 585.759 kb on - strand, within HMPREF1058_RS16830at 585.780 kb on - strand, within HMPREF1058_RS16830at 585.901 kb on + strandat 586.003 kb on + strand, within HMPREF1058_RS16825at 586.004 kb on - strand, within HMPREF1058_RS16825at 586.079 kb on - strand, within HMPREF1058_RS16825at 586.133 kb on + strand, within HMPREF1058_RS16825at 586.148 kb on - strand, within HMPREF1058_RS16825

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
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583,162 - HMPREF1058_RS16840 0.25 +0.6
583,206 + HMPREF1058_RS16840 0.29 +0.5
583,207 - HMPREF1058_RS16840 0.29 +0.6
583,207 - HMPREF1058_RS16840 0.29 -2.2
583,207 - HMPREF1058_RS16840 0.29 -0.6
583,256 + HMPREF1058_RS16840 0.33 +0.1
583,261 + HMPREF1058_RS16840 0.34 +1.0
583,266 - +1.0
583,266 - HMPREF1058_RS16840 0.34 +0.2
583,266 - HMPREF1058_RS16840 0.34 +0.0
583,313 + HMPREF1058_RS16840 0.38 -2.5
583,313 + HMPREF1058_RS16840 0.38 -0.4
583,314 - HMPREF1058_RS16840 0.39 +0.0
583,372 - HMPREF1058_RS16840 0.44 -0.7
583,375 + HMPREF1058_RS16840 0.44 +0.1
583,375 + HMPREF1058_RS16840 0.44 +1.8
583,376 - HMPREF1058_RS16840 0.44 +0.4
583,465 - HMPREF1058_RS16840 0.52 +0.4
583,527 + HMPREF1058_RS16840 0.58 +0.5
583,614 - HMPREF1058_RS16840 0.66 -0.1
583,614 - HMPREF1058_RS16840 0.66 +0.8
583,626 + HMPREF1058_RS16840 0.67 +2.0
583,650 + HMPREF1058_RS16840 0.70 -1.3
583,650 + HMPREF1058_RS16840 0.70 +0.4
583,651 - HMPREF1058_RS16840 0.70 -2.0
583,654 - HMPREF1058_RS16840 0.70 +0.1
583,654 - HMPREF1058_RS16840 0.70 -0.5
583,654 - HMPREF1058_RS16840 0.70 +0.5
583,654 - HMPREF1058_RS16840 0.70 -0.8
583,657 + HMPREF1058_RS16840 0.70 -0.3
583,755 - HMPREF1058_RS16840 0.79 +0.4
583,759 - HMPREF1058_RS16840 0.80 +0.4
583,794 + HMPREF1058_RS16840 0.83 +0.1
583,843 + HMPREF1058_RS16840 0.87 +1.4
583,843 + HMPREF1058_RS16840 0.87 -0.6
583,892 + -0.3
583,893 - -1.9
583,909 - -0.1
583,942 + -0.1
583,972 - -0.6
583,974 + +1.4
583,975 - +0.2
584,023 + +1.0
584,030 + -0.5
584,045 + +0.8
584,045 + -0.5
584,045 + -1.3
584,046 - +0.4
584,046 - +0.2
584,046 - -3.1
584,048 - -0.4
584,048 - +0.9
584,052 - -0.9
584,090 + -2.3
584,093 - -1.7
584,093 - -2.1
584,095 + -3.0
584,095 + -2.7
584,095 + -1.0
584,096 - -3.0
584,096 - -2.8
584,096 - -2.3
584,102 + -0.3
584,106 + -2.1
584,107 - -2.0
584,110 - -1.8
584,215 + HMPREF1058_RS16835 0.10 -3.7
584,221 + HMPREF1058_RS16835 0.11 -2.5
584,270 + HMPREF1058_RS16835 0.16 -2.9
584,282 + HMPREF1058_RS16835 0.17 +1.1
584,344 + HMPREF1058_RS16835 0.23 -2.9
584,344 + HMPREF1058_RS16835 0.23 -0.8
584,345 - HMPREF1058_RS16835 0.23 -3.3
584,353 + HMPREF1058_RS16835 0.23 -1.2
584,358 + HMPREF1058_RS16835 0.24 -0.9
584,359 - HMPREF1058_RS16835 0.24 -3.5
584,359 - HMPREF1058_RS16835 0.24 -3.5
584,359 - HMPREF1058_RS16835 0.24 -3.6
584,408 + HMPREF1058_RS16835 0.29 -3.1
584,465 + HMPREF1058_RS16835 0.34 -3.4
584,465 + HMPREF1058_RS16835 0.34 -0.2
584,602 + HMPREF1058_RS16835 0.47 -2.4
584,605 + HMPREF1058_RS16835 0.48 -2.8
584,641 + HMPREF1058_RS16835 0.51 -3.3
584,748 - HMPREF1058_RS16835 0.61 -3.5
584,755 + HMPREF1058_RS16835 0.62 -1.4
584,845 + HMPREF1058_RS16835 0.71 -1.1
584,845 + HMPREF1058_RS16835 0.71 -0.4
584,845 + HMPREF1058_RS16835 0.71 -0.9
584,984 + HMPREF1058_RS16835 0.84 -1.2
584,985 - HMPREF1058_RS16835 0.84 -2.6
585,187 + -3.0
585,196 - -0.3
585,244 - +0.1
585,246 - -0.2
585,250 + -1.3
585,250 + -2.5
585,291 - HMPREF1058_RS16830 0.14 +0.3
585,298 + HMPREF1058_RS16830 0.15 -1.7
585,299 - HMPREF1058_RS16830 0.15 +0.8
585,302 - HMPREF1058_RS16830 0.16 +0.7
585,313 - HMPREF1058_RS16830 0.17 -0.6
585,316 + HMPREF1058_RS16830 0.17 -2.4
585,362 + HMPREF1058_RS16830 0.24 -0.1
585,387 + HMPREF1058_RS16830 0.27 -2.0
585,387 + HMPREF1058_RS16830 0.27 -1.9
585,388 - HMPREF1058_RS16830 0.27 +0.1
585,388 - HMPREF1058_RS16830 0.27 +0.3
585,389 + HMPREF1058_RS16830 0.27 -4.6
585,390 - HMPREF1058_RS16830 0.27 -0.5
585,392 - HMPREF1058_RS16830 0.28 -0.2
585,396 - HMPREF1058_RS16830 0.28 +0.0
585,396 - HMPREF1058_RS16830 0.28 +0.6
585,399 - HMPREF1058_RS16830 0.29 +0.3
585,399 - HMPREF1058_RS16830 0.29 +0.5
585,480 - HMPREF1058_RS16830 0.40 +0.5
585,496 - HMPREF1058_RS16830 0.42 +0.7
585,497 + HMPREF1058_RS16830 0.42 +0.6
585,516 + HMPREF1058_RS16830 0.44 -2.6
585,520 + HMPREF1058_RS16830 0.45 -1.7
585,521 - HMPREF1058_RS16830 0.45 +0.3
585,521 - HMPREF1058_RS16830 0.45 +0.1
585,521 - HMPREF1058_RS16830 0.45 -0.4
585,531 - HMPREF1058_RS16830 0.46 +0.8
585,533 + HMPREF1058_RS16830 0.47 -1.5
585,657 - HMPREF1058_RS16830 0.63 -2.3
585,707 - HMPREF1058_RS16830 0.70 +0.4
585,719 + HMPREF1058_RS16830 0.72 -4.8
585,720 - HMPREF1058_RS16830 0.72 +0.7
585,732 + HMPREF1058_RS16830 0.73 -3.5
585,758 + HMPREF1058_RS16830 0.77 -1.9
585,759 - HMPREF1058_RS16830 0.77 +0.0
585,780 - HMPREF1058_RS16830 0.80 -2.1
585,901 + -1.8
586,003 + HMPREF1058_RS16825 0.13 -4.0
586,004 - HMPREF1058_RS16825 0.14 -1.3
586,079 - HMPREF1058_RS16825 0.27 -2.8
586,133 + HMPREF1058_RS16825 0.37 -2.8
586,148 - HMPREF1058_RS16825 0.39 -4.4

Or see this region's nucleotide sequence