Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16075 and HMPREF1058_RS16070 are separated by 4 nucleotides HMPREF1058_RS16070 and HMPREF1058_RS16065 are separated by 2 nucleotides HMPREF1058_RS16065 and HMPREF1058_RS16060 are separated by 287 nucleotides HMPREF1058_RS16060 and HMPREF1058_RS16055 are separated by 21 nucleotides
HMPREF1058_RS16075: HMPREF1058_RS16075 - hypothetical protein, at 766,300 to 767,286
_RS16075
HMPREF1058_RS16070: HMPREF1058_RS16070 - helix-turn-helix transcriptional regulator, at 767,291 to 767,578
_RS16070
HMPREF1058_RS16065: HMPREF1058_RS16065 - DUF1016 family protein, at 767,581 to 768,639
_RS16065
HMPREF1058_RS16060: HMPREF1058_RS16060 - 5S ribosomal RNA, at 768,927 to 769,035
_RS16060
HMPREF1058_RS16055: HMPREF1058_RS16055 - AAA family ATPase, at 769,057 to 770,673
_RS16055
Position (kb) 767
768
769 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 766.665 kb on + strand, within HMPREF1058_RS16075 at 766.666 kb on - strand, within HMPREF1058_RS16075 at 766.676 kb on + strand, within HMPREF1058_RS16075 at 766.811 kb on - strand, within HMPREF1058_RS16075 at 766.960 kb on - strand, within HMPREF1058_RS16075 at 767.043 kb on - strand, within HMPREF1058_RS16075 at 767.043 kb on - strand, within HMPREF1058_RS16075 at 767.048 kb on + strand, within HMPREF1058_RS16075 at 767.049 kb on - strand at 767.049 kb on - strand, within HMPREF1058_RS16075 at 767.101 kb on + strand, within HMPREF1058_RS16075 at 767.131 kb on + strand, within HMPREF1058_RS16075 at 767.159 kb on - strand, within HMPREF1058_RS16075 at 767.195 kb on + strand at 767.195 kb on + strand at 767.196 kb on - strand at 767.422 kb on - strand, within HMPREF1058_RS16070 at 767.453 kb on - strand, within HMPREF1058_RS16070 at 767.498 kb on + strand, within HMPREF1058_RS16070 at 767.498 kb on + strand, within HMPREF1058_RS16070 at 767.508 kb on - strand, within HMPREF1058_RS16070 at 767.563 kb on + strand at 767.573 kb on + strand at 767.582 kb on + strand at 767.583 kb on - strand at 767.702 kb on + strand, within HMPREF1058_RS16065 at 767.713 kb on + strand, within HMPREF1058_RS16065 at 767.713 kb on + strand, within HMPREF1058_RS16065 at 767.737 kb on + strand, within HMPREF1058_RS16065 at 767.882 kb on + strand, within HMPREF1058_RS16065 at 767.883 kb on - strand, within HMPREF1058_RS16065 at 767.924 kb on - strand, within HMPREF1058_RS16065 at 767.931 kb on - strand, within HMPREF1058_RS16065 at 768.048 kb on + strand, within HMPREF1058_RS16065 at 768.188 kb on - strand, within HMPREF1058_RS16065 at 768.231 kb on - strand, within HMPREF1058_RS16065 at 768.336 kb on + strand, within HMPREF1058_RS16065 at 768.336 kb on + strand, within HMPREF1058_RS16065 at 768.425 kb on + strand, within HMPREF1058_RS16065 at 768.465 kb on + strand, within HMPREF1058_RS16065 at 768.515 kb on + strand, within HMPREF1058_RS16065 at 768.555 kb on + strand at 768.576 kb on - strand at 768.635 kb on - strand at 768.691 kb on - strand at 768.725 kb on + strand at 768.755 kb on + strand at 768.941 kb on + strand, within HMPREF1058_RS16060 at 768.942 kb on - strand, within HMPREF1058_RS16060 at 768.942 kb on - strand, within HMPREF1058_RS16060 at 769.003 kb on - strand, within HMPREF1058_RS16060 at 769.025 kb on + strand at 769.025 kb on + strand at 769.025 kb on + strand at 769.033 kb on + strand at 769.040 kb on - strand at 769.180 kb on - strand at 769.194 kb on + strand at 769.195 kb on - strand at 769.198 kb on + strand at 769.204 kb on + strand at 769.204 kb on + strand at 769.258 kb on + strand, within HMPREF1058_RS16055 at 769.266 kb on + strand, within HMPREF1058_RS16055 at 769.267 kb on - strand, within HMPREF1058_RS16055 at 769.351 kb on - strand, within HMPREF1058_RS16055 at 769.351 kb on - strand, within HMPREF1058_RS16055 at 769.475 kb on - strand, within HMPREF1058_RS16055 at 769.527 kb on + strand, within HMPREF1058_RS16055 at 769.528 kb on - strand, within HMPREF1058_RS16055 at 769.549 kb on + strand, within HMPREF1058_RS16055 at 769.636 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source remove 766,665 + HMPREF1058_RS16075 0.37 -0.0 766,666 - HMPREF1058_RS16075 0.37 +0.8 766,676 + HMPREF1058_RS16075 0.38 -0.7 766,811 - HMPREF1058_RS16075 0.52 +0.0 766,960 - HMPREF1058_RS16075 0.67 -0.4 767,043 - HMPREF1058_RS16075 0.75 -1.7 767,043 - HMPREF1058_RS16075 0.75 +0.7 767,048 + HMPREF1058_RS16075 0.76 -0.3 767,049 - -0.6 767,049 - HMPREF1058_RS16075 0.76 -0.9 767,101 + HMPREF1058_RS16075 0.81 -0.6 767,131 + HMPREF1058_RS16075 0.84 +0.1 767,159 - HMPREF1058_RS16075 0.87 +1.4 767,195 + -0.9 767,195 + -0.6 767,196 - +0.0 767,422 - HMPREF1058_RS16070 0.45 -0.8 767,453 - HMPREF1058_RS16070 0.56 -3.5 767,498 + HMPREF1058_RS16070 0.72 -2.3 767,498 + HMPREF1058_RS16070 0.72 -1.3 767,508 - HMPREF1058_RS16070 0.75 -1.7 767,563 + -1.7 767,573 + -1.0 767,582 + -0.6 767,583 - -1.6 767,702 + HMPREF1058_RS16065 0.11 -3.2 767,713 + HMPREF1058_RS16065 0.12 -2.0 767,713 + HMPREF1058_RS16065 0.12 -2.7 767,737 + HMPREF1058_RS16065 0.15 -0.4 767,882 + HMPREF1058_RS16065 0.28 -3.4 767,883 - HMPREF1058_RS16065 0.29 -2.6 767,924 - HMPREF1058_RS16065 0.32 +0.6 767,931 - HMPREF1058_RS16065 0.33 -0.8 768,048 + HMPREF1058_RS16065 0.44 -2.5 768,188 - HMPREF1058_RS16065 0.57 -1.7 768,231 - HMPREF1058_RS16065 0.61 +0.9 768,336 + HMPREF1058_RS16065 0.71 -1.9 768,336 + HMPREF1058_RS16065 0.71 -0.7 768,425 + HMPREF1058_RS16065 0.80 -1.0 768,465 + HMPREF1058_RS16065 0.83 -2.1 768,515 + HMPREF1058_RS16065 0.88 -2.2 768,555 + -1.1 768,576 - -2.1 768,635 - +0.5 768,691 - +1.0 768,725 + +2.4 768,755 + -1.9 768,941 + HMPREF1058_RS16060 0.13 -1.8 768,942 - HMPREF1058_RS16060 0.14 -2.8 768,942 - HMPREF1058_RS16060 0.14 -1.3 769,003 - HMPREF1058_RS16060 0.70 +0.6 769,025 + +2.4 769,025 + -1.7 769,025 + -1.1 769,033 + -4.0 769,040 - -1.5 769,180 - -0.1 769,194 + -2.1 769,195 - -1.4 769,198 + -1.9 769,204 + -2.5 769,204 + -1.0 769,258 + HMPREF1058_RS16055 0.12 -1.5 769,266 + HMPREF1058_RS16055 0.13 -1.4 769,267 - HMPREF1058_RS16055 0.13 -2.0 769,351 - HMPREF1058_RS16055 0.18 +1.1 769,351 - HMPREF1058_RS16055 0.18 +0.3 769,475 - HMPREF1058_RS16055 0.26 -0.7 769,527 + HMPREF1058_RS16055 0.29 -1.2 769,528 - HMPREF1058_RS16055 0.29 -0.2 769,549 + HMPREF1058_RS16055 0.30 -2.3 769,636 + -1.0
Or see this region's nucleotide sequence