Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15870

Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS15875 and HMPREF1058_RS15870 are separated by 49 nucleotidesHMPREF1058_RS15870 and HMPREF1058_RS15865 are separated by 228 nucleotidesHMPREF1058_RS15865 and HMPREF1058_RS15860 are separated by 10 nucleotides HMPREF1058_RS15875: HMPREF1058_RS15875 - histidinol dehydrogenase, at 815,990 to 817,270 _RS15875 HMPREF1058_RS15870: HMPREF1058_RS15870 - ATP phosphoribosyltransferase, at 817,320 to 818,171 _RS15870 HMPREF1058_RS15865: HMPREF1058_RS15865 - PaaI family thioesterase, at 818,400 to 818,891 _RS15865 HMPREF1058_RS15860: HMPREF1058_RS15860 - Dabb family protein, at 818,902 to 819,201 _RS15860 Position (kb) 817 818 819Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 816.435 kb on + strand, within HMPREF1058_RS15875at 816.467 kb on - strand, within HMPREF1058_RS15875at 816.589 kb on + strand, within HMPREF1058_RS15875at 816.593 kb on + strand, within HMPREF1058_RS15875at 816.639 kb on + strand, within HMPREF1058_RS15875at 816.640 kb on - strand, within HMPREF1058_RS15875at 816.740 kb on - strand, within HMPREF1058_RS15875at 816.766 kb on - strand, within HMPREF1058_RS15875at 816.816 kb on - strand, within HMPREF1058_RS15875at 816.863 kb on + strand, within HMPREF1058_RS15875at 816.864 kb on - strand, within HMPREF1058_RS15875at 817.028 kb on - strand, within HMPREF1058_RS15875at 817.111 kb on + strand, within HMPREF1058_RS15875at 817.111 kb on + strand, within HMPREF1058_RS15875at 817.255 kb on - strandat 817.270 kb on + strandat 817.271 kb on - strandat 817.276 kb on + strandat 817.277 kb on - strandat 817.284 kb on + strandat 817.321 kb on + strandat 817.421 kb on + strand, within HMPREF1058_RS15870at 817.421 kb on + strand, within HMPREF1058_RS15870at 817.421 kb on + strand, within HMPREF1058_RS15870at 817.422 kb on - strand, within HMPREF1058_RS15870at 817.422 kb on - strand, within HMPREF1058_RS15870at 817.535 kb on - strand, within HMPREF1058_RS15870at 817.535 kb on - strand, within HMPREF1058_RS15870at 817.620 kb on - strand, within HMPREF1058_RS15870at 817.688 kb on + strand, within HMPREF1058_RS15870at 817.689 kb on - strand, within HMPREF1058_RS15870at 817.689 kb on - strand, within HMPREF1058_RS15870at 817.715 kb on + strand, within HMPREF1058_RS15870at 817.822 kb on + strand, within HMPREF1058_RS15870at 817.839 kb on - strand, within HMPREF1058_RS15870at 817.881 kb on - strand, within HMPREF1058_RS15870at 817.881 kb on - strand, within HMPREF1058_RS15870at 817.884 kb on + strand, within HMPREF1058_RS15870at 818.064 kb on + strand, within HMPREF1058_RS15870at 818.204 kb on + strandat 818.215 kb on + strandat 818.242 kb on + strandat 818.242 kb on + strandat 818.244 kb on + strandat 818.247 kb on + strandat 818.247 kb on + strandat 818.248 kb on - strandat 818.248 kb on - strandat 818.355 kb on - strandat 818.407 kb on - strandat 818.526 kb on - strand, within HMPREF1058_RS15865at 818.531 kb on - strand, within HMPREF1058_RS15865at 818.550 kb on + strand, within HMPREF1058_RS15865at 818.556 kb on - strand, within HMPREF1058_RS15865at 818.648 kb on + strand, within HMPREF1058_RS15865at 818.732 kb on + strand, within HMPREF1058_RS15865at 818.774 kb on + strand, within HMPREF1058_RS15865at 818.774 kb on + strand, within HMPREF1058_RS15865at 818.779 kb on - strand, within HMPREF1058_RS15865at 818.849 kb on + strandat 818.849 kb on + strandat 818.850 kb on - strandat 818.891 kb on + strandat 818.903 kb on + strandat 818.913 kb on - strandat 819.074 kb on - strand, within HMPREF1058_RS15860at 819.074 kb on - strand, within HMPREF1058_RS15860at 819.084 kb on + strand, within HMPREF1058_RS15860at 819.091 kb on + strand, within HMPREF1058_RS15860at 819.124 kb on - strand, within HMPREF1058_RS15860

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
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816,435 + HMPREF1058_RS15875 0.35 -2.4
816,467 - HMPREF1058_RS15875 0.37 -2.4
816,589 + HMPREF1058_RS15875 0.47 -4.6
816,593 + HMPREF1058_RS15875 0.47 -1.8
816,639 + HMPREF1058_RS15875 0.51 -2.8
816,640 - HMPREF1058_RS15875 0.51 -4.4
816,740 - HMPREF1058_RS15875 0.59 -2.1
816,766 - HMPREF1058_RS15875 0.61 -1.5
816,816 - HMPREF1058_RS15875 0.64 -1.4
816,863 + HMPREF1058_RS15875 0.68 -3.7
816,864 - HMPREF1058_RS15875 0.68 -2.9
817,028 - HMPREF1058_RS15875 0.81 -2.9
817,111 + HMPREF1058_RS15875 0.88 -1.6
817,111 + HMPREF1058_RS15875 0.88 -2.7
817,255 - -2.2
817,270 + -3.7
817,271 - -1.2
817,276 + -3.2
817,277 - +0.8
817,284 + -1.2
817,321 + -1.8
817,421 + HMPREF1058_RS15870 0.12 -2.6
817,421 + HMPREF1058_RS15870 0.12 -2.8
817,421 + HMPREF1058_RS15870 0.12 -2.3
817,422 - HMPREF1058_RS15870 0.12 -1.6
817,422 - HMPREF1058_RS15870 0.12 -2.3
817,535 - HMPREF1058_RS15870 0.25 -2.4
817,535 - HMPREF1058_RS15870 0.25 -2.4
817,620 - HMPREF1058_RS15870 0.35 -3.0
817,688 + HMPREF1058_RS15870 0.43 -0.5
817,689 - HMPREF1058_RS15870 0.43 -2.2
817,689 - HMPREF1058_RS15870 0.43 -1.6
817,715 + HMPREF1058_RS15870 0.46 -2.7
817,822 + HMPREF1058_RS15870 0.59 -1.6
817,839 - HMPREF1058_RS15870 0.61 -2.7
817,881 - HMPREF1058_RS15870 0.66 -3.0
817,881 - HMPREF1058_RS15870 0.66 -2.4
817,884 + HMPREF1058_RS15870 0.66 -3.5
818,064 + HMPREF1058_RS15870 0.87 -1.7
818,204 + -1.9
818,215 + -1.4
818,242 + -4.4
818,242 + -1.6
818,244 + -3.5
818,247 + -3.4
818,247 + -3.2
818,248 - -0.5
818,248 - +0.3
818,355 - -0.2
818,407 - -0.8
818,526 - HMPREF1058_RS15865 0.26 -0.5
818,531 - HMPREF1058_RS15865 0.27 -0.8
818,550 + HMPREF1058_RS15865 0.30 -0.4
818,556 - HMPREF1058_RS15865 0.32 +0.6
818,648 + HMPREF1058_RS15865 0.50 -0.9
818,732 + HMPREF1058_RS15865 0.67 +0.3
818,774 + HMPREF1058_RS15865 0.76 +0.2
818,774 + HMPREF1058_RS15865 0.76 -2.4
818,779 - HMPREF1058_RS15865 0.77 +0.9
818,849 + -0.8
818,849 + -0.5
818,850 - -0.0
818,891 + -0.5
818,903 + +2.2
818,913 - +0.5
819,074 - HMPREF1058_RS15860 0.57 -1.0
819,074 - HMPREF1058_RS15860 0.57 -0.8
819,084 + HMPREF1058_RS15860 0.61 -1.3
819,091 + HMPREF1058_RS15860 0.63 +0.5
819,124 - HMPREF1058_RS15860 0.74 -1.8

Or see this region's nucleotide sequence