Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15720 and HMPREF1058_RS15715 are separated by 69 nucleotides HMPREF1058_RS15715 and HMPREF1058_RS15710 are separated by 218 nucleotides HMPREF1058_RS15710 and HMPREF1058_RS15705 overlap by 4 nucleotides
HMPREF1058_RS15720: HMPREF1058_RS15720 - DUF4476 domain-containing protein, at 849,681 to 850,292
_RS15720
HMPREF1058_RS15715: HMPREF1058_RS15715 - heavy metal-binding domain-containing protein, at 850,362 to 850,685
_RS15715
HMPREF1058_RS15710: HMPREF1058_RS15710 - cytidine deaminase, at 850,904 to 851,383
_RS15710
HMPREF1058_RS15705: HMPREF1058_RS15705 - winged helix DNA-binding domain-containing protein, at 851,380 to 852,420
_RS15705
Position (kb) 850
851
852 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 849.928 kb on + strand, within HMPREF1058_RS15720 at 849.929 kb on - strand, within HMPREF1058_RS15720 at 849.929 kb on - strand, within HMPREF1058_RS15720 at 849.960 kb on - strand, within HMPREF1058_RS15720 at 849.982 kb on + strand, within HMPREF1058_RS15720 at 849.985 kb on - strand, within HMPREF1058_RS15720 at 850.103 kb on - strand, within HMPREF1058_RS15720 at 850.201 kb on + strand, within HMPREF1058_RS15720 at 850.202 kb on - strand, within HMPREF1058_RS15720 at 850.202 kb on - strand, within HMPREF1058_RS15720 at 850.223 kb on + strand, within HMPREF1058_RS15720 at 850.279 kb on + strand at 850.293 kb on + strand at 850.294 kb on - strand at 850.310 kb on + strand at 850.409 kb on + strand, within HMPREF1058_RS15715 at 850.409 kb on + strand, within HMPREF1058_RS15715 at 850.410 kb on - strand, within HMPREF1058_RS15715 at 850.410 kb on - strand, within HMPREF1058_RS15715 at 850.455 kb on + strand, within HMPREF1058_RS15715 at 850.455 kb on + strand, within HMPREF1058_RS15715 at 850.463 kb on + strand, within HMPREF1058_RS15715 at 850.509 kb on - strand, within HMPREF1058_RS15715 at 850.623 kb on + strand, within HMPREF1058_RS15715 at 850.633 kb on + strand, within HMPREF1058_RS15715 at 850.634 kb on - strand, within HMPREF1058_RS15715 at 850.646 kb on + strand, within HMPREF1058_RS15715 at 850.646 kb on + strand, within HMPREF1058_RS15715 at 850.685 kb on + strand at 850.685 kb on + strand at 850.686 kb on - strand at 850.706 kb on - strand at 850.706 kb on - strand at 850.706 kb on - strand at 850.706 kb on - strand at 850.707 kb on + strand at 850.708 kb on - strand at 850.709 kb on + strand at 850.766 kb on - strand at 850.769 kb on + strand at 850.770 kb on - strand at 850.770 kb on - strand at 850.772 kb on - strand at 850.926 kb on + strand at 850.932 kb on + strand at 851.012 kb on + strand, within HMPREF1058_RS15710 at 851.012 kb on + strand, within HMPREF1058_RS15710 at 851.013 kb on - strand, within HMPREF1058_RS15710 at 851.128 kb on + strand, within HMPREF1058_RS15710 at 851.173 kb on - strand, within HMPREF1058_RS15710 at 851.253 kb on + strand, within HMPREF1058_RS15710 at 851.259 kb on + strand, within HMPREF1058_RS15710 at 851.287 kb on + strand, within HMPREF1058_RS15710 at 851.287 kb on + strand, within HMPREF1058_RS15710 at 851.321 kb on + strand, within HMPREF1058_RS15710 at 851.322 kb on - strand, within HMPREF1058_RS15710 at 851.324 kb on - strand, within HMPREF1058_RS15710 at 851.324 kb on - strand, within HMPREF1058_RS15710 at 851.325 kb on + strand, within HMPREF1058_RS15710 at 851.384 kb on + strand at 851.388 kb on + strand at 851.388 kb on + strand at 851.389 kb on - strand at 851.414 kb on + strand at 851.417 kb on + strand at 851.418 kb on - strand at 851.450 kb on + strand at 851.450 kb on + strand at 851.451 kb on - strand at 851.482 kb on + strand at 851.482 kb on + strand at 851.483 kb on - strand at 851.568 kb on - strand, within HMPREF1058_RS15705 at 851.568 kb on - strand, within HMPREF1058_RS15705 at 851.568 kb on - strand, within HMPREF1058_RS15705 at 851.602 kb on + strand, within HMPREF1058_RS15705 at 851.602 kb on + strand, within HMPREF1058_RS15705 at 851.619 kb on + strand, within HMPREF1058_RS15705 at 851.621 kb on + strand, within HMPREF1058_RS15705 at 851.621 kb on + strand at 851.622 kb on - strand, within HMPREF1058_RS15705 at 851.789 kb on + strand, within HMPREF1058_RS15705 at 851.790 kb on - strand, within HMPREF1058_RS15705 at 851.790 kb on - strand, within HMPREF1058_RS15705 at 851.866 kb on - strand, within HMPREF1058_RS15705 at 851.942 kb on + strand, within HMPREF1058_RS15705 at 851.942 kb on + strand, within HMPREF1058_RS15705 at 851.964 kb on + strand, within HMPREF1058_RS15705 at 851.964 kb on + strand at 851.965 kb on - strand, within HMPREF1058_RS15705 at 851.965 kb on - strand, within HMPREF1058_RS15705 at 851.965 kb on - strand, within HMPREF1058_RS15705 at 851.965 kb on - strand, within HMPREF1058_RS15705 at 852.052 kb on - strand, within HMPREF1058_RS15705 at 852.133 kb on - strand, within HMPREF1058_RS15705 at 852.155 kb on + strand, within HMPREF1058_RS15705 at 852.155 kb on + strand, within HMPREF1058_RS15705 at 852.216 kb on - strand, within HMPREF1058_RS15705 at 852.230 kb on - strand, within HMPREF1058_RS15705 at 852.294 kb on - strand, within HMPREF1058_RS15705 at 852.337 kb on - strand at 852.337 kb on - strand at 852.338 kb on + strand at 852.339 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source remove 849,928 + HMPREF1058_RS15720 0.40 -0.8 849,929 - HMPREF1058_RS15720 0.41 +0.5 849,929 - HMPREF1058_RS15720 0.41 +0.9 849,960 - HMPREF1058_RS15720 0.46 -1.1 849,982 + HMPREF1058_RS15720 0.49 -1.3 849,985 - HMPREF1058_RS15720 0.50 +0.6 850,103 - HMPREF1058_RS15720 0.69 -1.9 850,201 + HMPREF1058_RS15720 0.85 -1.8 850,202 - HMPREF1058_RS15720 0.85 -0.3 850,202 - HMPREF1058_RS15720 0.85 -0.3 850,223 + HMPREF1058_RS15720 0.89 -1.0 850,279 + +0.3 850,293 + -0.2 850,294 - -0.3 850,310 + -0.1 850,409 + HMPREF1058_RS15715 0.15 +0.5 850,409 + HMPREF1058_RS15715 0.15 +1.5 850,410 - HMPREF1058_RS15715 0.15 +0.3 850,410 - HMPREF1058_RS15715 0.15 +0.2 850,455 + HMPREF1058_RS15715 0.29 +1.1 850,455 + HMPREF1058_RS15715 0.29 -0.1 850,463 + HMPREF1058_RS15715 0.31 +1.2 850,509 - HMPREF1058_RS15715 0.45 +0.2 850,623 + HMPREF1058_RS15715 0.81 -0.8 850,633 + HMPREF1058_RS15715 0.84 -0.6 850,634 - HMPREF1058_RS15715 0.84 -0.6 850,646 + HMPREF1058_RS15715 0.88 +0.2 850,646 + HMPREF1058_RS15715 0.88 +0.1 850,685 + +2.1 850,685 + +0.7 850,686 - +0.9 850,706 - +1.1 850,706 - +0.7 850,706 - +1.0 850,706 - -0.8 850,707 + +0.8 850,708 - +0.5 850,709 + -0.2 850,766 - +0.4 850,769 + +1.1 850,770 - -0.3 850,770 - -0.3 850,772 - +0.4 850,926 + -3.4 850,932 + -3.2 851,012 + HMPREF1058_RS15710 0.23 -2.5 851,012 + HMPREF1058_RS15710 0.23 -0.8 851,013 - HMPREF1058_RS15710 0.23 -2.6 851,128 + HMPREF1058_RS15710 0.47 -2.8 851,173 - HMPREF1058_RS15710 0.56 -2.1 851,253 + HMPREF1058_RS15710 0.73 -2.4 851,259 + HMPREF1058_RS15710 0.74 -2.6 851,287 + HMPREF1058_RS15710 0.80 -2.1 851,287 + HMPREF1058_RS15710 0.80 -1.6 851,321 + HMPREF1058_RS15710 0.87 -2.4 851,322 - HMPREF1058_RS15710 0.87 -2.8 851,324 - HMPREF1058_RS15710 0.88 -3.0 851,324 - HMPREF1058_RS15710 0.88 -3.4 851,325 + HMPREF1058_RS15710 0.88 -4.2 851,384 + -0.5 851,388 + -1.4 851,388 + -1.5 851,389 - -1.0 851,414 + -1.2 851,417 + +1.6 851,418 - -1.8 851,450 + +1.8 851,450 + -0.8 851,451 - -1.3 851,482 + +0.0 851,482 + +1.5 851,483 - -0.2 851,568 - HMPREF1058_RS15705 0.18 +0.8 851,568 - HMPREF1058_RS15705 0.18 -0.2 851,568 - HMPREF1058_RS15705 0.18 -0.7 851,602 + HMPREF1058_RS15705 0.21 +0.3 851,602 + HMPREF1058_RS15705 0.21 -0.2 851,619 + HMPREF1058_RS15705 0.23 -0.3 851,621 + HMPREF1058_RS15705 0.23 +0.9 851,621 + +2.3 851,622 - HMPREF1058_RS15705 0.23 -0.8 851,789 + HMPREF1058_RS15705 0.39 -0.6 851,790 - HMPREF1058_RS15705 0.39 +2.6 851,790 - HMPREF1058_RS15705 0.39 -2.1 851,866 - HMPREF1058_RS15705 0.47 -0.9 851,942 + HMPREF1058_RS15705 0.54 +1.8 851,942 + HMPREF1058_RS15705 0.54 -3.0 851,964 + HMPREF1058_RS15705 0.56 -0.1 851,964 + +1.1 851,965 - HMPREF1058_RS15705 0.56 -0.4 851,965 - HMPREF1058_RS15705 0.56 +0.1 851,965 - HMPREF1058_RS15705 0.56 -0.7 851,965 - HMPREF1058_RS15705 0.56 +0.1 852,052 - HMPREF1058_RS15705 0.65 -0.4 852,133 - HMPREF1058_RS15705 0.72 -0.2 852,155 + HMPREF1058_RS15705 0.74 -1.2 852,155 + HMPREF1058_RS15705 0.74 -1.1 852,216 - HMPREF1058_RS15705 0.80 +1.0 852,230 - HMPREF1058_RS15705 0.82 +0.7 852,294 - HMPREF1058_RS15705 0.88 +0.0 852,337 - -0.7 852,337 - -2.0 852,338 + -2.0 852,339 - +0.1
Or see this region's nucleotide sequence