Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15665

Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS15670 and HMPREF1058_RS15665 are separated by 46 nucleotidesHMPREF1058_RS15665 and HMPREF1058_RS15660 are separated by 40 nucleotides HMPREF1058_RS15670: HMPREF1058_RS15670 - galactose mutarotase, at 860,665 to 861,759 _RS15670 HMPREF1058_RS15665: HMPREF1058_RS15665 - MFS transporter, at 861,806 to 863,146 _RS15665 HMPREF1058_RS15660: HMPREF1058_RS15660 - galactokinase, at 863,187 to 864,341 _RS15660 Position (kb) 861 862 863 864Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 860.816 kb on + strand, within HMPREF1058_RS15670at 860.817 kb on - strand, within HMPREF1058_RS15670at 860.817 kb on - strandat 860.821 kb on - strand, within HMPREF1058_RS15670at 860.848 kb on + strand, within HMPREF1058_RS15670at 860.849 kb on - strand, within HMPREF1058_RS15670at 860.849 kb on - strand, within HMPREF1058_RS15670at 860.874 kb on + strand, within HMPREF1058_RS15670at 860.877 kb on + strand, within HMPREF1058_RS15670at 860.878 kb on - strand, within HMPREF1058_RS15670at 860.879 kb on + strand, within HMPREF1058_RS15670at 860.879 kb on + strand, within HMPREF1058_RS15670at 860.890 kb on - strandat 860.980 kb on + strand, within HMPREF1058_RS15670at 860.980 kb on + strand, within HMPREF1058_RS15670at 860.980 kb on + strandat 860.991 kb on + strand, within HMPREF1058_RS15670at 861.155 kb on + strand, within HMPREF1058_RS15670at 861.159 kb on + strand, within HMPREF1058_RS15670at 861.215 kb on + strand, within HMPREF1058_RS15670at 861.216 kb on - strand, within HMPREF1058_RS15670at 861.310 kb on + strand, within HMPREF1058_RS15670at 861.329 kb on + strand, within HMPREF1058_RS15670at 861.329 kb on + strand, within HMPREF1058_RS15670at 861.359 kb on + strand, within HMPREF1058_RS15670at 861.460 kb on + strand, within HMPREF1058_RS15670at 861.460 kb on + strand, within HMPREF1058_RS15670at 861.460 kb on + strand, within HMPREF1058_RS15670at 861.465 kb on - strand, within HMPREF1058_RS15670at 861.544 kb on + strand, within HMPREF1058_RS15670at 861.549 kb on + strand, within HMPREF1058_RS15670at 861.571 kb on + strand, within HMPREF1058_RS15670at 861.573 kb on + strand, within HMPREF1058_RS15670at 861.573 kb on + strand, within HMPREF1058_RS15670at 861.574 kb on - strand, within HMPREF1058_RS15670at 861.718 kb on + strandat 861.771 kb on - strandat 861.776 kb on - strandat 861.783 kb on - strandat 861.830 kb on - strandat 862.009 kb on + strand, within HMPREF1058_RS15665at 862.059 kb on + strand, within HMPREF1058_RS15665at 862.088 kb on - strandat 862.111 kb on + strand, within HMPREF1058_RS15665at 862.111 kb on + strand, within HMPREF1058_RS15665at 862.112 kb on - strand, within HMPREF1058_RS15665at 862.113 kb on + strand, within HMPREF1058_RS15665at 862.114 kb on - strand, within HMPREF1058_RS15665at 862.119 kb on + strand, within HMPREF1058_RS15665at 862.136 kb on + strand, within HMPREF1058_RS15665at 862.137 kb on - strand, within HMPREF1058_RS15665at 862.156 kb on + strand, within HMPREF1058_RS15665at 862.163 kb on + strand, within HMPREF1058_RS15665at 862.197 kb on + strand, within HMPREF1058_RS15665at 862.201 kb on + strand, within HMPREF1058_RS15665at 862.374 kb on + strand, within HMPREF1058_RS15665at 862.375 kb on - strand, within HMPREF1058_RS15665at 862.516 kb on + strandat 862.524 kb on + strand, within HMPREF1058_RS15665at 862.524 kb on + strand, within HMPREF1058_RS15665at 862.530 kb on + strand, within HMPREF1058_RS15665at 862.548 kb on - strand, within HMPREF1058_RS15665at 862.551 kb on + strand, within HMPREF1058_RS15665at 862.552 kb on - strand, within HMPREF1058_RS15665at 862.589 kb on + strand, within HMPREF1058_RS15665at 862.655 kb on - strand, within HMPREF1058_RS15665at 862.667 kb on + strandat 862.813 kb on + strandat 862.825 kb on + strand, within HMPREF1058_RS15665at 863.048 kb on - strandat 863.096 kb on + strandat 863.096 kb on + strandat 863.151 kb on - strandat 863.163 kb on + strandat 863.164 kb on - strandat 863.177 kb on + strandat 863.194 kb on + strandat 863.194 kb on + strandat 863.194 kb on + strandat 863.195 kb on - strandat 863.195 kb on - strandat 863.195 kb on - strandat 863.199 kb on + strandat 863.199 kb on + strandat 863.203 kb on + strandat 863.249 kb on - strandat 863.251 kb on - strandat 863.271 kb on - strandat 863.277 kb on - strandat 863.326 kb on + strand, within HMPREF1058_RS15660at 863.330 kb on + strand, within HMPREF1058_RS15660at 863.336 kb on + strand, within HMPREF1058_RS15660at 863.375 kb on - strand, within HMPREF1058_RS15660at 863.407 kb on + strand, within HMPREF1058_RS15660at 863.407 kb on + strand, within HMPREF1058_RS15660at 863.407 kb on + strand, within HMPREF1058_RS15660at 863.408 kb on - strand, within HMPREF1058_RS15660at 863.460 kb on - strand, within HMPREF1058_RS15660at 863.460 kb on - strand, within HMPREF1058_RS15660at 863.553 kb on - strand, within HMPREF1058_RS15660at 863.579 kb on + strand, within HMPREF1058_RS15660at 863.580 kb on - strand, within HMPREF1058_RS15660at 863.584 kb on - strand, within HMPREF1058_RS15660at 863.648 kb on - strand, within HMPREF1058_RS15660at 863.671 kb on - strand, within HMPREF1058_RS15660at 863.671 kb on - strand, within HMPREF1058_RS15660at 863.681 kb on - strand, within HMPREF1058_RS15660at 863.770 kb on - strand, within HMPREF1058_RS15660at 863.770 kb on - strand, within HMPREF1058_RS15660at 863.930 kb on + strand, within HMPREF1058_RS15660at 863.979 kb on + strand, within HMPREF1058_RS15660at 863.979 kb on + strand, within HMPREF1058_RS15660at 863.981 kb on + strand, within HMPREF1058_RS15660at 863.981 kb on + strand, within HMPREF1058_RS15660at 863.994 kb on + strand, within HMPREF1058_RS15660at 864.019 kb on + strand, within HMPREF1058_RS15660at 864.065 kb on - strand, within HMPREF1058_RS15660at 864.115 kb on + strand, within HMPREF1058_RS15660at 864.115 kb on + strand, within HMPREF1058_RS15660

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
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860,816 + HMPREF1058_RS15670 0.14 -3.6
860,817 - HMPREF1058_RS15670 0.14 -1.3
860,817 - -0.8
860,821 - HMPREF1058_RS15670 0.14 +0.8
860,848 + HMPREF1058_RS15670 0.17 -2.7
860,849 - HMPREF1058_RS15670 0.17 -0.6
860,849 - HMPREF1058_RS15670 0.17 -0.4
860,874 + HMPREF1058_RS15670 0.19 -2.5
860,877 + HMPREF1058_RS15670 0.19 -2.5
860,878 - HMPREF1058_RS15670 0.19 -1.6
860,879 + HMPREF1058_RS15670 0.20 -1.7
860,879 + HMPREF1058_RS15670 0.20 -2.0
860,890 - +1.4
860,980 + HMPREF1058_RS15670 0.29 -2.6
860,980 + HMPREF1058_RS15670 0.29 -3.4
860,980 + -0.4
860,991 + HMPREF1058_RS15670 0.30 +0.1
861,155 + HMPREF1058_RS15670 0.45 -1.4
861,159 + HMPREF1058_RS15670 0.45 -2.9
861,215 + HMPREF1058_RS15670 0.50 +0.6
861,216 - HMPREF1058_RS15670 0.50 -0.9
861,310 + HMPREF1058_RS15670 0.59 +0.6
861,329 + HMPREF1058_RS15670 0.61 +0.4
861,329 + HMPREF1058_RS15670 0.61 +0.9
861,359 + HMPREF1058_RS15670 0.63 -0.0
861,460 + HMPREF1058_RS15670 0.73 +1.1
861,460 + HMPREF1058_RS15670 0.73 +0.9
861,460 + HMPREF1058_RS15670 0.73 +2.0
861,465 - HMPREF1058_RS15670 0.73 +0.1
861,544 + HMPREF1058_RS15670 0.80 +1.6
861,549 + HMPREF1058_RS15670 0.81 +0.8
861,571 + HMPREF1058_RS15670 0.83 +1.7
861,573 + HMPREF1058_RS15670 0.83 +2.0
861,573 + HMPREF1058_RS15670 0.83 +0.8
861,574 - HMPREF1058_RS15670 0.83 -1.7
861,718 + +3.0
861,771 - -2.0
861,776 - -2.8
861,783 - +0.4
861,830 - -0.6
862,009 + HMPREF1058_RS15665 0.15 -2.0
862,059 + HMPREF1058_RS15665 0.19 -1.8
862,088 - -1.3
862,111 + HMPREF1058_RS15665 0.23 -0.9
862,111 + HMPREF1058_RS15665 0.23 -1.8
862,112 - HMPREF1058_RS15665 0.23 -1.3
862,113 + HMPREF1058_RS15665 0.23 -3.7
862,114 - HMPREF1058_RS15665 0.23 -1.4
862,119 + HMPREF1058_RS15665 0.23 -2.1
862,136 + HMPREF1058_RS15665 0.25 -2.6
862,137 - HMPREF1058_RS15665 0.25 -0.4
862,156 + HMPREF1058_RS15665 0.26 -2.0
862,163 + HMPREF1058_RS15665 0.27 -3.3
862,197 + HMPREF1058_RS15665 0.29 -2.9
862,201 + HMPREF1058_RS15665 0.29 +0.2
862,374 + HMPREF1058_RS15665 0.42 -2.0
862,375 - HMPREF1058_RS15665 0.42 -2.9
862,516 + -0.9
862,524 + HMPREF1058_RS15665 0.54 -0.6
862,524 + HMPREF1058_RS15665 0.54 -2.3
862,530 + HMPREF1058_RS15665 0.54 -3.4
862,548 - HMPREF1058_RS15665 0.55 -1.6
862,551 + HMPREF1058_RS15665 0.56 -1.7
862,552 - HMPREF1058_RS15665 0.56 +2.4
862,589 + HMPREF1058_RS15665 0.58 -1.4
862,655 - HMPREF1058_RS15665 0.63 -2.1
862,667 + -0.2
862,813 + +0.1
862,825 + HMPREF1058_RS15665 0.76 -2.8
863,048 - -1.5
863,096 + -0.4
863,096 + -2.4
863,151 - -1.4
863,163 + -1.3
863,164 - -0.5
863,177 + -2.7
863,194 + -2.0
863,194 + -2.0
863,194 + -0.3
863,195 - -1.7
863,195 - -1.6
863,195 - -0.5
863,199 + +0.7
863,199 + -0.9
863,203 + -2.4
863,249 - -2.9
863,251 - -3.1
863,271 - -1.1
863,277 - -2.5
863,326 + HMPREF1058_RS15660 0.12 -1.4
863,330 + HMPREF1058_RS15660 0.12 -1.9
863,336 + HMPREF1058_RS15660 0.13 -1.9
863,375 - HMPREF1058_RS15660 0.16 -1.0
863,407 + HMPREF1058_RS15660 0.19 -1.5
863,407 + HMPREF1058_RS15660 0.19 -1.6
863,407 + HMPREF1058_RS15660 0.19 -2.0
863,408 - HMPREF1058_RS15660 0.19 -2.4
863,460 - HMPREF1058_RS15660 0.24 -0.4
863,460 - HMPREF1058_RS15660 0.24 -2.2
863,553 - HMPREF1058_RS15660 0.32 -1.6
863,579 + HMPREF1058_RS15660 0.34 -1.5
863,580 - HMPREF1058_RS15660 0.34 -2.7
863,584 - HMPREF1058_RS15660 0.34 -3.1
863,648 - HMPREF1058_RS15660 0.40 -1.3
863,671 - HMPREF1058_RS15660 0.42 -0.9
863,671 - HMPREF1058_RS15660 0.42 -0.1
863,681 - HMPREF1058_RS15660 0.43 +1.5
863,770 - HMPREF1058_RS15660 0.50 +0.0
863,770 - HMPREF1058_RS15660 0.50 -2.0
863,930 + HMPREF1058_RS15660 0.64 -2.0
863,979 + HMPREF1058_RS15660 0.69 -2.6
863,979 + HMPREF1058_RS15660 0.69 -1.8
863,981 + HMPREF1058_RS15660 0.69 -1.7
863,981 + HMPREF1058_RS15660 0.69 -1.6
863,994 + HMPREF1058_RS15660 0.70 -1.6
864,019 + HMPREF1058_RS15660 0.72 -1.8
864,065 - HMPREF1058_RS15660 0.76 -0.6
864,115 + HMPREF1058_RS15660 0.80 -0.9
864,115 + HMPREF1058_RS15660 0.80 -0.7

Or see this region's nucleotide sequence