Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15385 and HMPREF1058_RS15380 are separated by 39 nucleotides HMPREF1058_RS15380 and HMPREF1058_RS15375 are separated by 13 nucleotides HMPREF1058_RS15375 and HMPREF1058_RS15370 are separated by 193 nucleotides
HMPREF1058_RS15385: HMPREF1058_RS15385 - metallophosphoesterase, at 933,927 to 935,087
_RS15385
HMPREF1058_RS15380: HMPREF1058_RS15380 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 935,127 to 935,885
_RS15380
HMPREF1058_RS15375: HMPREF1058_RS15375 - DUF4369 domain-containing protein, at 935,899 to 936,597
_RS15375
HMPREF1058_RS15370: HMPREF1058_RS15370 - S46 family peptidase, at 936,791 to 938,956
_RS15370
Position (kb) 935
936
937 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 934.973 kb on - strand at 934.973 kb on - strand at 935.100 kb on - strand at 935.137 kb on + strand at 935.139 kb on + strand at 935.139 kb on + strand at 935.146 kb on + strand at 935.147 kb on - strand at 935.182 kb on + strand at 935.196 kb on - strand at 935.196 kb on - strand at 935.196 kb on - strand at 935.196 kb on - strand at 935.203 kb on + strand, within HMPREF1058_RS15380 at 935.203 kb on + strand, within HMPREF1058_RS15380 at 935.204 kb on - strand, within HMPREF1058_RS15380 at 935.204 kb on - strand, within HMPREF1058_RS15380 at 935.204 kb on - strand, within HMPREF1058_RS15380 at 935.207 kb on + strand, within HMPREF1058_RS15380 at 935.207 kb on + strand, within HMPREF1058_RS15380 at 935.287 kb on - strand, within HMPREF1058_RS15380 at 935.287 kb on - strand, within HMPREF1058_RS15380 at 935.293 kb on + strand, within HMPREF1058_RS15380 at 935.297 kb on + strand, within HMPREF1058_RS15380 at 935.315 kb on - strand, within HMPREF1058_RS15380 at 935.346 kb on + strand, within HMPREF1058_RS15380 at 935.487 kb on - strand, within HMPREF1058_RS15380 at 935.488 kb on + strand, within HMPREF1058_RS15380 at 935.489 kb on - strand, within HMPREF1058_RS15380 at 935.489 kb on - strand, within HMPREF1058_RS15380 at 935.499 kb on - strand, within HMPREF1058_RS15380 at 935.530 kb on + strand, within HMPREF1058_RS15380 at 935.576 kb on - strand, within HMPREF1058_RS15380 at 935.621 kb on + strand, within HMPREF1058_RS15380 at 935.679 kb on - strand, within HMPREF1058_RS15380 at 935.679 kb on - strand, within HMPREF1058_RS15380 at 935.694 kb on - strand, within HMPREF1058_RS15380 at 935.697 kb on - strand, within HMPREF1058_RS15380 at 935.735 kb on + strand, within HMPREF1058_RS15380 at 935.749 kb on + strand, within HMPREF1058_RS15380 at 935.749 kb on + strand, within HMPREF1058_RS15380 at 935.750 kb on - strand, within HMPREF1058_RS15380 at 935.750 kb on - strand, within HMPREF1058_RS15380 at 935.753 kb on + strand at 935.754 kb on - strand, within HMPREF1058_RS15380 at 935.754 kb on - strand, within HMPREF1058_RS15380 at 935.883 kb on + strand at 935.901 kb on - strand at 936.074 kb on - strand, within HMPREF1058_RS15375 at 936.295 kb on + strand, within HMPREF1058_RS15375 at 936.296 kb on - strand, within HMPREF1058_RS15375 at 936.405 kb on + strand, within HMPREF1058_RS15375 at 936.530 kb on - strand at 936.715 kb on + strand at 936.760 kb on - strand at 936.760 kb on - strand at 936.862 kb on + strand at 936.924 kb on + strand at 937.078 kb on + strand, within HMPREF1058_RS15370 at 937.078 kb on + strand, within HMPREF1058_RS15370 at 937.079 kb on - strand, within HMPREF1058_RS15370 at 937.079 kb on - strand, within HMPREF1058_RS15370 at 937.195 kb on + strand, within HMPREF1058_RS15370 at 937.196 kb on - strand, within HMPREF1058_RS15370 at 937.200 kb on + strand, within HMPREF1058_RS15370 at 937.201 kb on - strand, within HMPREF1058_RS15370 at 937.340 kb on + strand, within HMPREF1058_RS15370 at 937.494 kb on - strand, within HMPREF1058_RS15370 at 937.523 kb on + strand, within HMPREF1058_RS15370 at 937.525 kb on + strand, within HMPREF1058_RS15370
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source remove 934,973 - +0.1 934,973 - +0.6 935,100 - -1.2 935,137 + -1.9 935,139 + -3.1 935,139 + -2.0 935,146 + -3.1 935,147 - -3.3 935,182 + -1.1 935,196 - -1.9 935,196 - -1.8 935,196 - -1.7 935,196 - -0.6 935,203 + HMPREF1058_RS15380 0.10 -2.3 935,203 + HMPREF1058_RS15380 0.10 -3.9 935,204 - HMPREF1058_RS15380 0.10 -3.1 935,204 - HMPREF1058_RS15380 0.10 -1.1 935,204 - HMPREF1058_RS15380 0.10 -2.2 935,207 + HMPREF1058_RS15380 0.11 -3.8 935,207 + HMPREF1058_RS15380 0.11 -1.7 935,287 - HMPREF1058_RS15380 0.21 -1.5 935,287 - HMPREF1058_RS15380 0.21 +0.5 935,293 + HMPREF1058_RS15380 0.22 -2.2 935,297 + HMPREF1058_RS15380 0.22 -1.7 935,315 - HMPREF1058_RS15380 0.25 -3.4 935,346 + HMPREF1058_RS15380 0.29 -3.4 935,487 - HMPREF1058_RS15380 0.47 -0.7 935,488 + HMPREF1058_RS15380 0.48 -2.8 935,489 - HMPREF1058_RS15380 0.48 -2.1 935,489 - HMPREF1058_RS15380 0.48 -0.8 935,499 - HMPREF1058_RS15380 0.49 +0.1 935,530 + HMPREF1058_RS15380 0.53 -2.5 935,576 - HMPREF1058_RS15380 0.59 -2.4 935,621 + HMPREF1058_RS15380 0.65 -1.7 935,679 - HMPREF1058_RS15380 0.73 +0.1 935,679 - HMPREF1058_RS15380 0.73 -2.3 935,694 - HMPREF1058_RS15380 0.75 +1.5 935,697 - HMPREF1058_RS15380 0.75 -1.3 935,735 + HMPREF1058_RS15380 0.80 -3.7 935,749 + HMPREF1058_RS15380 0.82 -3.9 935,749 + HMPREF1058_RS15380 0.82 -0.8 935,750 - HMPREF1058_RS15380 0.82 -1.5 935,750 - HMPREF1058_RS15380 0.82 +1.0 935,753 + +0.5 935,754 - HMPREF1058_RS15380 0.83 -0.9 935,754 - HMPREF1058_RS15380 0.83 -1.5 935,883 + +0.5 935,901 - +2.5 936,074 - HMPREF1058_RS15375 0.25 -2.2 936,295 + HMPREF1058_RS15375 0.57 +0.1 936,296 - HMPREF1058_RS15375 0.57 -1.1 936,405 + HMPREF1058_RS15375 0.72 +1.5 936,530 - -0.7 936,715 + -0.5 936,760 - -0.5 936,760 - +0.5 936,862 + -1.5 936,924 + +0.5 937,078 + HMPREF1058_RS15370 0.13 +2.2 937,078 + HMPREF1058_RS15370 0.13 +1.9 937,079 - HMPREF1058_RS15370 0.13 +0.1 937,079 - HMPREF1058_RS15370 0.13 -1.6 937,195 + HMPREF1058_RS15370 0.19 -0.3 937,196 - HMPREF1058_RS15370 0.19 +1.2 937,200 + HMPREF1058_RS15370 0.19 +0.2 937,201 - HMPREF1058_RS15370 0.19 +1.3 937,340 + HMPREF1058_RS15370 0.25 -0.2 937,494 - HMPREF1058_RS15370 0.32 +0.0 937,523 + HMPREF1058_RS15370 0.34 -0.9 937,525 + HMPREF1058_RS15370 0.34 -1.2
Or see this region's nucleotide sequence