Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS14940 and HMPREF1058_RS14935 are separated by 611 nucleotides HMPREF1058_RS14935 and HMPREF1058_RS14930 are separated by 132 nucleotides HMPREF1058_RS14930 and HMPREF1058_RS14925 are separated by 132 nucleotides
HMPREF1058_RS14940: HMPREF1058_RS14940 - OmpA family protein, at 1,066,071 to 1,067,261
_RS14940
HMPREF1058_RS14935: HMPREF1058_RS14935 - tRNA-Ser, at 1,067,873 to 1,067,957
_RS14935
HMPREF1058_RS14930: HMPREF1058_RS14930 - AraC family transcriptional regulator, at 1,068,090 to 1,069,841
_RS14930
HMPREF1058_RS14925: HMPREF1058_RS14925 - thioredoxin family protein, at 1,069,974 to 1,072,007
_RS14925
Position (kb)
1068
1069
1070 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1067.103 kb on - strand, within HMPREF1058_RS14940 at 1067.104 kb on + strand, within HMPREF1058_RS14940 at 1067.104 kb on + strand, within HMPREF1058_RS14940 at 1067.158 kb on + strand at 1067.228 kb on + strand at 1067.254 kb on + strand at 1067.255 kb on - strand at 1067.256 kb on - strand at 1067.288 kb on + strand at 1067.290 kb on + strand at 1067.297 kb on - strand at 1067.297 kb on - strand at 1067.349 kb on + strand at 1067.349 kb on + strand at 1067.374 kb on + strand at 1067.375 kb on - strand at 1067.375 kb on - strand at 1067.386 kb on - strand at 1067.403 kb on + strand at 1067.530 kb on - strand at 1067.531 kb on + strand at 1067.531 kb on + strand at 1067.531 kb on + strand at 1067.532 kb on - strand at 1067.532 kb on - strand at 1067.537 kb on - strand at 1067.725 kb on - strand at 1067.732 kb on - strand at 1067.736 kb on - strand at 1067.785 kb on - strand at 1068.089 kb on + strand at 1068.142 kb on + strand at 1068.142 kb on + strand at 1068.143 kb on - strand at 1068.241 kb on - strand at 1068.241 kb on - strand at 1068.287 kb on + strand, within HMPREF1058_RS14930 at 1068.312 kb on - strand, within HMPREF1058_RS14930 at 1068.339 kb on + strand, within HMPREF1058_RS14930 at 1068.339 kb on + strand, within HMPREF1058_RS14930 at 1068.339 kb on + strand, within HMPREF1058_RS14930 at 1068.339 kb on + strand, within HMPREF1058_RS14930 at 1068.340 kb on - strand, within HMPREF1058_RS14930 at 1068.346 kb on - strand at 1068.478 kb on - strand, within HMPREF1058_RS14930 at 1068.604 kb on - strand, within HMPREF1058_RS14930 at 1068.669 kb on - strand, within HMPREF1058_RS14930 at 1068.669 kb on - strand, within HMPREF1058_RS14930 at 1068.714 kb on + strand, within HMPREF1058_RS14930 at 1068.716 kb on + strand, within HMPREF1058_RS14930 at 1068.716 kb on + strand, within HMPREF1058_RS14930 at 1068.716 kb on + strand, within HMPREF1058_RS14930 at 1068.756 kb on + strand, within HMPREF1058_RS14930 at 1068.756 kb on + strand, within HMPREF1058_RS14930 at 1068.761 kb on - strand, within HMPREF1058_RS14930 at 1068.761 kb on - strand, within HMPREF1058_RS14930 at 1068.816 kb on + strand, within HMPREF1058_RS14930 at 1068.817 kb on - strand, within HMPREF1058_RS14930 at 1068.836 kb on - strand, within HMPREF1058_RS14930 at 1068.836 kb on - strand, within HMPREF1058_RS14930 at 1068.836 kb on - strand, within HMPREF1058_RS14930 at 1068.921 kb on - strand, within HMPREF1058_RS14930 at 1068.950 kb on + strand, within HMPREF1058_RS14930 at 1068.950 kb on + strand, within HMPREF1058_RS14930 at 1068.950 kb on + strand, within HMPREF1058_RS14930 at 1069.006 kb on + strand, within HMPREF1058_RS14930 at 1069.006 kb on + strand, within HMPREF1058_RS14930 at 1069.007 kb on - strand, within HMPREF1058_RS14930 at 1069.010 kb on + strand, within HMPREF1058_RS14930 at 1069.018 kb on - strand, within HMPREF1058_RS14930 at 1069.051 kb on + strand, within HMPREF1058_RS14930 at 1069.115 kb on + strand at 1069.121 kb on - strand, within HMPREF1058_RS14930 at 1069.172 kb on - strand, within HMPREF1058_RS14930 at 1069.241 kb on - strand, within HMPREF1058_RS14930 at 1069.259 kb on + strand, within HMPREF1058_RS14930 at 1069.259 kb on + strand, within HMPREF1058_RS14930 at 1069.261 kb on + strand, within HMPREF1058_RS14930 at 1069.352 kb on + strand, within HMPREF1058_RS14930 at 1069.353 kb on - strand, within HMPREF1058_RS14930 at 1069.354 kb on + strand, within HMPREF1058_RS14930 at 1069.408 kb on + strand, within HMPREF1058_RS14930 at 1069.600 kb on - strand, within HMPREF1058_RS14930 at 1069.611 kb on - strand, within HMPREF1058_RS14930 at 1069.611 kb on - strand, within HMPREF1058_RS14930 at 1069.685 kb on - strand at 1069.805 kb on + strand at 1069.840 kb on - strand at 1069.891 kb on + strand at 1069.891 kb on + strand at 1069.892 kb on - strand at 1069.892 kb on - strand at 1069.892 kb on - strand at 1069.894 kb on + strand at 1069.900 kb on + strand at 1069.900 kb on + strand at 1069.903 kb on + strand at 1069.903 kb on - strand at 1069.903 kb on - strand at 1069.903 kb on - strand at 1069.912 kb on + strand at 1069.912 kb on + strand at 1069.912 kb on + strand at 1069.961 kb on + strand at 1069.968 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source remove 1,067,103 - HMPREF1058_RS14940 0.87 -1.3 1,067,104 + HMPREF1058_RS14940 0.87 -0.3 1,067,104 + HMPREF1058_RS14940 0.87 -2.3 1,067,158 + +0.4 1,067,228 + -1.3 1,067,254 + -1.4 1,067,255 - +0.1 1,067,256 - +0.3 1,067,288 + -2.2 1,067,290 + -1.8 1,067,297 - +0.9 1,067,297 - -0.8 1,067,349 + +0.1 1,067,349 + -3.0 1,067,374 + -0.4 1,067,375 - -1.1 1,067,375 - -1.4 1,067,386 - -0.9 1,067,403 + +0.2 1,067,530 - +0.3 1,067,531 + +0.4 1,067,531 + -1.2 1,067,531 + -2.3 1,067,532 - +1.2 1,067,532 - +3.1 1,067,537 - +0.8 1,067,725 - -0.0 1,067,732 - +0.1 1,067,736 - -0.1 1,067,785 - -0.7 1,068,089 + -0.9 1,068,142 + -1.8 1,068,142 + -3.1 1,068,143 - +2.2 1,068,241 - -1.6 1,068,241 - -2.3 1,068,287 + HMPREF1058_RS14930 0.11 -1.1 1,068,312 - HMPREF1058_RS14930 0.13 -2.2 1,068,339 + HMPREF1058_RS14930 0.14 -2.2 1,068,339 + HMPREF1058_RS14930 0.14 -1.9 1,068,339 + HMPREF1058_RS14930 0.14 -0.7 1,068,339 + HMPREF1058_RS14930 0.14 -3.3 1,068,340 - HMPREF1058_RS14930 0.14 -2.4 1,068,346 - -0.9 1,068,478 - HMPREF1058_RS14930 0.22 -1.3 1,068,604 - HMPREF1058_RS14930 0.29 -0.5 1,068,669 - HMPREF1058_RS14930 0.33 -1.9 1,068,669 - HMPREF1058_RS14930 0.33 -0.6 1,068,714 + HMPREF1058_RS14930 0.36 -0.0 1,068,716 + HMPREF1058_RS14930 0.36 -2.4 1,068,716 + HMPREF1058_RS14930 0.36 -1.0 1,068,716 + HMPREF1058_RS14930 0.36 +0.1 1,068,756 + HMPREF1058_RS14930 0.38 -1.7 1,068,756 + HMPREF1058_RS14930 0.38 -1.9 1,068,761 - HMPREF1058_RS14930 0.38 -0.7 1,068,761 - HMPREF1058_RS14930 0.38 -2.2 1,068,816 + HMPREF1058_RS14930 0.41 +0.1 1,068,817 - HMPREF1058_RS14930 0.41 -2.4 1,068,836 - HMPREF1058_RS14930 0.43 -1.2 1,068,836 - HMPREF1058_RS14930 0.43 -0.4 1,068,836 - HMPREF1058_RS14930 0.43 -1.2 1,068,921 - HMPREF1058_RS14930 0.47 -1.0 1,068,950 + HMPREF1058_RS14930 0.49 -1.8 1,068,950 + HMPREF1058_RS14930 0.49 -0.7 1,068,950 + HMPREF1058_RS14930 0.49 -1.6 1,069,006 + HMPREF1058_RS14930 0.52 -1.2 1,069,006 + HMPREF1058_RS14930 0.52 -2.5 1,069,007 - HMPREF1058_RS14930 0.52 -2.5 1,069,010 + HMPREF1058_RS14930 0.53 -0.9 1,069,018 - HMPREF1058_RS14930 0.53 -2.6 1,069,051 + HMPREF1058_RS14930 0.55 -1.4 1,069,115 + +2.8 1,069,121 - HMPREF1058_RS14930 0.59 -2.8 1,069,172 - HMPREF1058_RS14930 0.62 -1.1 1,069,241 - HMPREF1058_RS14930 0.66 -2.2 1,069,259 + HMPREF1058_RS14930 0.67 -3.0 1,069,259 + HMPREF1058_RS14930 0.67 -1.7 1,069,261 + HMPREF1058_RS14930 0.67 -1.9 1,069,352 + HMPREF1058_RS14930 0.72 -2.2 1,069,353 - HMPREF1058_RS14930 0.72 -1.7 1,069,354 + HMPREF1058_RS14930 0.72 -2.0 1,069,408 + HMPREF1058_RS14930 0.75 -0.3 1,069,600 - HMPREF1058_RS14930 0.86 -1.3 1,069,611 - HMPREF1058_RS14930 0.87 -1.8 1,069,611 - HMPREF1058_RS14930 0.87 -1.8 1,069,685 - -1.1 1,069,805 + -0.0 1,069,840 - -1.8 1,069,891 + +1.4 1,069,891 + +2.0 1,069,892 - -2.0 1,069,892 - +0.5 1,069,892 - -3.1 1,069,894 + -0.1 1,069,900 + +1.6 1,069,900 + +1.4 1,069,903 + +1.8 1,069,903 - -3.1 1,069,903 - -0.8 1,069,903 - -1.3 1,069,912 + +2.2 1,069,912 + -0.7 1,069,912 + +1.4 1,069,961 + +0.4 1,069,968 + -1.2
Or see this region's nucleotide sequence