Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14930

Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS14940 and HMPREF1058_RS14935 are separated by 611 nucleotidesHMPREF1058_RS14935 and HMPREF1058_RS14930 are separated by 132 nucleotidesHMPREF1058_RS14930 and HMPREF1058_RS14925 are separated by 132 nucleotides HMPREF1058_RS14940: HMPREF1058_RS14940 - OmpA family protein, at 1,066,071 to 1,067,261 _RS14940 HMPREF1058_RS14935: HMPREF1058_RS14935 - tRNA-Ser, at 1,067,873 to 1,067,957 _RS14935 HMPREF1058_RS14930: HMPREF1058_RS14930 - AraC family transcriptional regulator, at 1,068,090 to 1,069,841 _RS14930 HMPREF1058_RS14925: HMPREF1058_RS14925 - thioredoxin family protein, at 1,069,974 to 1,072,007 _RS14925 Position (kb) 1068 1069 1070Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1067.103 kb on - strand, within HMPREF1058_RS14940at 1067.104 kb on + strand, within HMPREF1058_RS14940at 1067.104 kb on + strand, within HMPREF1058_RS14940at 1067.158 kb on + strandat 1067.228 kb on + strandat 1067.254 kb on + strandat 1067.255 kb on - strandat 1067.256 kb on - strandat 1067.288 kb on + strandat 1067.290 kb on + strandat 1067.297 kb on - strandat 1067.297 kb on - strandat 1067.349 kb on + strandat 1067.349 kb on + strandat 1067.374 kb on + strandat 1067.375 kb on - strandat 1067.375 kb on - strandat 1067.386 kb on - strandat 1067.403 kb on + strandat 1067.530 kb on - strandat 1067.531 kb on + strandat 1067.531 kb on + strandat 1067.531 kb on + strandat 1067.532 kb on - strandat 1067.532 kb on - strandat 1067.537 kb on - strandat 1067.725 kb on - strandat 1067.732 kb on - strandat 1067.736 kb on - strandat 1067.785 kb on - strandat 1068.089 kb on + strandat 1068.142 kb on + strandat 1068.142 kb on + strandat 1068.143 kb on - strandat 1068.241 kb on - strandat 1068.241 kb on - strandat 1068.287 kb on + strand, within HMPREF1058_RS14930at 1068.312 kb on - strand, within HMPREF1058_RS14930at 1068.339 kb on + strand, within HMPREF1058_RS14930at 1068.339 kb on + strand, within HMPREF1058_RS14930at 1068.339 kb on + strand, within HMPREF1058_RS14930at 1068.339 kb on + strand, within HMPREF1058_RS14930at 1068.340 kb on - strand, within HMPREF1058_RS14930at 1068.346 kb on - strandat 1068.478 kb on - strand, within HMPREF1058_RS14930at 1068.604 kb on - strand, within HMPREF1058_RS14930at 1068.669 kb on - strand, within HMPREF1058_RS14930at 1068.669 kb on - strand, within HMPREF1058_RS14930at 1068.714 kb on + strand, within HMPREF1058_RS14930at 1068.716 kb on + strand, within HMPREF1058_RS14930at 1068.716 kb on + strand, within HMPREF1058_RS14930at 1068.716 kb on + strand, within HMPREF1058_RS14930at 1068.756 kb on + strand, within HMPREF1058_RS14930at 1068.756 kb on + strand, within HMPREF1058_RS14930at 1068.761 kb on - strand, within HMPREF1058_RS14930at 1068.761 kb on - strand, within HMPREF1058_RS14930at 1068.816 kb on + strand, within HMPREF1058_RS14930at 1068.817 kb on - strand, within HMPREF1058_RS14930at 1068.836 kb on - strand, within HMPREF1058_RS14930at 1068.836 kb on - strand, within HMPREF1058_RS14930at 1068.836 kb on - strand, within HMPREF1058_RS14930at 1068.921 kb on - strand, within HMPREF1058_RS14930at 1068.950 kb on + strand, within HMPREF1058_RS14930at 1068.950 kb on + strand, within HMPREF1058_RS14930at 1068.950 kb on + strand, within HMPREF1058_RS14930at 1069.006 kb on + strand, within HMPREF1058_RS14930at 1069.006 kb on + strand, within HMPREF1058_RS14930at 1069.007 kb on - strand, within HMPREF1058_RS14930at 1069.010 kb on + strand, within HMPREF1058_RS14930at 1069.018 kb on - strand, within HMPREF1058_RS14930at 1069.051 kb on + strand, within HMPREF1058_RS14930at 1069.115 kb on + strandat 1069.121 kb on - strand, within HMPREF1058_RS14930at 1069.172 kb on - strand, within HMPREF1058_RS14930at 1069.241 kb on - strand, within HMPREF1058_RS14930at 1069.259 kb on + strand, within HMPREF1058_RS14930at 1069.259 kb on + strand, within HMPREF1058_RS14930at 1069.261 kb on + strand, within HMPREF1058_RS14930at 1069.352 kb on + strand, within HMPREF1058_RS14930at 1069.353 kb on - strand, within HMPREF1058_RS14930at 1069.354 kb on + strand, within HMPREF1058_RS14930at 1069.408 kb on + strand, within HMPREF1058_RS14930at 1069.600 kb on - strand, within HMPREF1058_RS14930at 1069.611 kb on - strand, within HMPREF1058_RS14930at 1069.611 kb on - strand, within HMPREF1058_RS14930at 1069.685 kb on - strandat 1069.805 kb on + strandat 1069.840 kb on - strandat 1069.891 kb on + strandat 1069.891 kb on + strandat 1069.892 kb on - strandat 1069.892 kb on - strandat 1069.892 kb on - strandat 1069.894 kb on + strandat 1069.900 kb on + strandat 1069.900 kb on + strandat 1069.903 kb on + strandat 1069.903 kb on - strandat 1069.903 kb on - strandat 1069.903 kb on - strandat 1069.912 kb on + strandat 1069.912 kb on + strandat 1069.912 kb on + strandat 1069.961 kb on + strandat 1069.968 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
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1,067,103 - HMPREF1058_RS14940 0.87 -1.3
1,067,104 + HMPREF1058_RS14940 0.87 -0.3
1,067,104 + HMPREF1058_RS14940 0.87 -2.3
1,067,158 + +0.4
1,067,228 + -1.3
1,067,254 + -1.4
1,067,255 - +0.1
1,067,256 - +0.3
1,067,288 + -2.2
1,067,290 + -1.8
1,067,297 - +0.9
1,067,297 - -0.8
1,067,349 + +0.1
1,067,349 + -3.0
1,067,374 + -0.4
1,067,375 - -1.1
1,067,375 - -1.4
1,067,386 - -0.9
1,067,403 + +0.2
1,067,530 - +0.3
1,067,531 + +0.4
1,067,531 + -1.2
1,067,531 + -2.3
1,067,532 - +1.2
1,067,532 - +3.1
1,067,537 - +0.8
1,067,725 - -0.0
1,067,732 - +0.1
1,067,736 - -0.1
1,067,785 - -0.7
1,068,089 + -0.9
1,068,142 + -1.8
1,068,142 + -3.1
1,068,143 - +2.2
1,068,241 - -1.6
1,068,241 - -2.3
1,068,287 + HMPREF1058_RS14930 0.11 -1.1
1,068,312 - HMPREF1058_RS14930 0.13 -2.2
1,068,339 + HMPREF1058_RS14930 0.14 -2.2
1,068,339 + HMPREF1058_RS14930 0.14 -1.9
1,068,339 + HMPREF1058_RS14930 0.14 -0.7
1,068,339 + HMPREF1058_RS14930 0.14 -3.3
1,068,340 - HMPREF1058_RS14930 0.14 -2.4
1,068,346 - -0.9
1,068,478 - HMPREF1058_RS14930 0.22 -1.3
1,068,604 - HMPREF1058_RS14930 0.29 -0.5
1,068,669 - HMPREF1058_RS14930 0.33 -1.9
1,068,669 - HMPREF1058_RS14930 0.33 -0.6
1,068,714 + HMPREF1058_RS14930 0.36 -0.0
1,068,716 + HMPREF1058_RS14930 0.36 -2.4
1,068,716 + HMPREF1058_RS14930 0.36 -1.0
1,068,716 + HMPREF1058_RS14930 0.36 +0.1
1,068,756 + HMPREF1058_RS14930 0.38 -1.7
1,068,756 + HMPREF1058_RS14930 0.38 -1.9
1,068,761 - HMPREF1058_RS14930 0.38 -0.7
1,068,761 - HMPREF1058_RS14930 0.38 -2.2
1,068,816 + HMPREF1058_RS14930 0.41 +0.1
1,068,817 - HMPREF1058_RS14930 0.41 -2.4
1,068,836 - HMPREF1058_RS14930 0.43 -1.2
1,068,836 - HMPREF1058_RS14930 0.43 -0.4
1,068,836 - HMPREF1058_RS14930 0.43 -1.2
1,068,921 - HMPREF1058_RS14930 0.47 -1.0
1,068,950 + HMPREF1058_RS14930 0.49 -1.8
1,068,950 + HMPREF1058_RS14930 0.49 -0.7
1,068,950 + HMPREF1058_RS14930 0.49 -1.6
1,069,006 + HMPREF1058_RS14930 0.52 -1.2
1,069,006 + HMPREF1058_RS14930 0.52 -2.5
1,069,007 - HMPREF1058_RS14930 0.52 -2.5
1,069,010 + HMPREF1058_RS14930 0.53 -0.9
1,069,018 - HMPREF1058_RS14930 0.53 -2.6
1,069,051 + HMPREF1058_RS14930 0.55 -1.4
1,069,115 + +2.8
1,069,121 - HMPREF1058_RS14930 0.59 -2.8
1,069,172 - HMPREF1058_RS14930 0.62 -1.1
1,069,241 - HMPREF1058_RS14930 0.66 -2.2
1,069,259 + HMPREF1058_RS14930 0.67 -3.0
1,069,259 + HMPREF1058_RS14930 0.67 -1.7
1,069,261 + HMPREF1058_RS14930 0.67 -1.9
1,069,352 + HMPREF1058_RS14930 0.72 -2.2
1,069,353 - HMPREF1058_RS14930 0.72 -1.7
1,069,354 + HMPREF1058_RS14930 0.72 -2.0
1,069,408 + HMPREF1058_RS14930 0.75 -0.3
1,069,600 - HMPREF1058_RS14930 0.86 -1.3
1,069,611 - HMPREF1058_RS14930 0.87 -1.8
1,069,611 - HMPREF1058_RS14930 0.87 -1.8
1,069,685 - -1.1
1,069,805 + -0.0
1,069,840 - -1.8
1,069,891 + +1.4
1,069,891 + +2.0
1,069,892 - -2.0
1,069,892 - +0.5
1,069,892 - -3.1
1,069,894 + -0.1
1,069,900 + +1.6
1,069,900 + +1.4
1,069,903 + +1.8
1,069,903 - -3.1
1,069,903 - -0.8
1,069,903 - -1.3
1,069,912 + +2.2
1,069,912 + -0.7
1,069,912 + +1.4
1,069,961 + +0.4
1,069,968 + -1.2

Or see this region's nucleotide sequence