Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS12735

Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS12740 and HMPREF1058_RS12735 are separated by 81 nucleotidesHMPREF1058_RS12735 and HMPREF1058_RS12730 overlap by 26 nucleotidesHMPREF1058_RS12730 and HMPREF1058_RS12725 are separated by 7 nucleotides HMPREF1058_RS12740: HMPREF1058_RS12740 - glutamate--tRNA ligase, at 44,142 to 45,659 _RS12740 HMPREF1058_RS12735: HMPREF1058_RS12735 - HDIG domain-containing protein, at 45,741 to 47,798 _RS12735 HMPREF1058_RS12730: HMPREF1058_RS12730 - low molecular weight phosphotyrosine protein phosphatase, at 47,773 to 48,243 _RS12730 HMPREF1058_RS12725: HMPREF1058_RS12725 - phosphatase, at 48,251 to 48,961 _RS12725 Position (kb) 45 46 47 48Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 45.732 kb on + strandat 45.735 kb on - strandat 45.800 kb on + strandat 45.817 kb on + strandat 45.875 kb on - strandat 45.901 kb on + strandat 45.940 kb on + strandat 45.940 kb on + strandat 45.941 kb on - strandat 45.979 kb on - strand, within HMPREF1058_RS12735at 46.044 kb on + strandat 46.084 kb on - strandat 46.119 kb on + strand, within HMPREF1058_RS12735at 46.120 kb on - strand, within HMPREF1058_RS12735at 46.173 kb on - strand, within HMPREF1058_RS12735at 46.221 kb on - strand, within HMPREF1058_RS12735at 46.301 kb on - strand, within HMPREF1058_RS12735at 46.301 kb on - strand, within HMPREF1058_RS12735at 46.329 kb on - strand, within HMPREF1058_RS12735at 46.467 kb on + strand, within HMPREF1058_RS12735at 46.474 kb on + strand, within HMPREF1058_RS12735at 46.475 kb on - strand, within HMPREF1058_RS12735at 46.520 kb on - strand, within HMPREF1058_RS12735at 46.557 kb on + strand, within HMPREF1058_RS12735at 46.557 kb on + strand, within HMPREF1058_RS12735at 46.557 kb on + strand, within HMPREF1058_RS12735at 46.558 kb on - strand, within HMPREF1058_RS12735at 46.558 kb on - strandat 46.561 kb on + strand, within HMPREF1058_RS12735at 46.562 kb on - strandat 46.590 kb on + strand, within HMPREF1058_RS12735at 46.709 kb on + strand, within HMPREF1058_RS12735at 46.710 kb on - strand, within HMPREF1058_RS12735at 46.745 kb on - strand, within HMPREF1058_RS12735at 46.819 kb on + strand, within HMPREF1058_RS12735at 46.930 kb on + strand, within HMPREF1058_RS12735at 46.930 kb on + strand, within HMPREF1058_RS12735at 46.941 kb on + strand, within HMPREF1058_RS12735at 46.948 kb on + strand, within HMPREF1058_RS12735at 46.951 kb on + strand, within HMPREF1058_RS12735at 47.011 kb on - strand, within HMPREF1058_RS12735at 47.011 kb on - strand, within HMPREF1058_RS12735at 47.011 kb on - strand, within HMPREF1058_RS12735at 47.260 kb on + strand, within HMPREF1058_RS12735at 47.261 kb on - strand, within HMPREF1058_RS12735at 47.262 kb on + strand, within HMPREF1058_RS12735at 47.262 kb on + strand, within HMPREF1058_RS12735at 47.263 kb on - strandat 47.343 kb on + strandat 47.469 kb on + strand, within HMPREF1058_RS12735at 47.470 kb on - strandat 47.470 kb on - strand, within HMPREF1058_RS12735at 47.671 kb on + strandat 47.717 kb on - strandat 47.717 kb on - strandat 47.760 kb on + strandat 47.760 kb on + strandat 47.760 kb on + strandat 47.761 kb on - strandat 47.797 kb on - strandat 47.880 kb on - strand, within HMPREF1058_RS12730at 47.968 kb on + strand, within HMPREF1058_RS12730at 47.969 kb on - strand, within HMPREF1058_RS12730at 47.974 kb on - strand, within HMPREF1058_RS12730at 47.997 kb on + strand, within HMPREF1058_RS12730at 48.022 kb on - strand, within HMPREF1058_RS12730at 48.106 kb on - strand, within HMPREF1058_RS12730at 48.139 kb on + strand, within HMPREF1058_RS12730at 48.140 kb on - strand, within HMPREF1058_RS12730at 48.174 kb on + strand, within HMPREF1058_RS12730at 48.243 kb on + strandat 48.244 kb on - strandat 48.245 kb on + strandat 48.245 kb on + strandat 48.246 kb on - strandat 48.248 kb on - strandat 48.248 kb on - strandat 48.248 kb on - strandat 48.248 kb on - strandat 48.416 kb on + strand, within HMPREF1058_RS12725at 48.417 kb on - strand, within HMPREF1058_RS12725at 48.474 kb on - strand, within HMPREF1058_RS12725at 48.488 kb on + strand, within HMPREF1058_RS12725at 48.489 kb on - strand, within HMPREF1058_RS12725at 48.503 kb on - strand, within HMPREF1058_RS12725at 48.503 kb on - strand, within HMPREF1058_RS12725at 48.542 kb on + strand, within HMPREF1058_RS12725at 48.578 kb on - strand, within HMPREF1058_RS12725at 48.645 kb on + strand, within HMPREF1058_RS12725at 48.651 kb on - strand, within HMPREF1058_RS12725at 48.692 kb on - strand, within HMPREF1058_RS12725at 48.693 kb on + strand, within HMPREF1058_RS12725at 48.694 kb on - strand, within HMPREF1058_RS12725at 48.736 kb on + strand, within HMPREF1058_RS12725at 48.769 kb on - strand, within HMPREF1058_RS12725

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
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45,732 + -0.3
45,735 - -0.4
45,800 + -0.8
45,817 + -1.0
45,875 - +0.4
45,901 + -2.0
45,940 + +0.7
45,940 + -3.6
45,941 - -0.7
45,979 - HMPREF1058_RS12735 0.12 -2.6
46,044 + +0.3
46,084 - -1.4
46,119 + HMPREF1058_RS12735 0.18 -3.4
46,120 - HMPREF1058_RS12735 0.18 -0.8
46,173 - HMPREF1058_RS12735 0.21 -3.0
46,221 - HMPREF1058_RS12735 0.23 -0.3
46,301 - HMPREF1058_RS12735 0.27 +1.3
46,301 - HMPREF1058_RS12735 0.27 -0.6
46,329 - HMPREF1058_RS12735 0.29 -1.4
46,467 + HMPREF1058_RS12735 0.35 -0.4
46,474 + HMPREF1058_RS12735 0.36 -1.4
46,475 - HMPREF1058_RS12735 0.36 -0.8
46,520 - HMPREF1058_RS12735 0.38 -1.3
46,557 + HMPREF1058_RS12735 0.40 -0.2
46,557 + HMPREF1058_RS12735 0.40 -2.2
46,557 + HMPREF1058_RS12735 0.40 -1.7
46,558 - HMPREF1058_RS12735 0.40 -0.2
46,558 - +0.3
46,561 + HMPREF1058_RS12735 0.40 +0.6
46,562 - +0.6
46,590 + HMPREF1058_RS12735 0.41 -1.1
46,709 + HMPREF1058_RS12735 0.47 -0.7
46,710 - HMPREF1058_RS12735 0.47 -2.4
46,745 - HMPREF1058_RS12735 0.49 -1.0
46,819 + HMPREF1058_RS12735 0.52 +1.6
46,930 + HMPREF1058_RS12735 0.58 -1.6
46,930 + HMPREF1058_RS12735 0.58 -1.7
46,941 + HMPREF1058_RS12735 0.58 -3.4
46,948 + HMPREF1058_RS12735 0.59 -0.9
46,951 + HMPREF1058_RS12735 0.59 +0.2
47,011 - HMPREF1058_RS12735 0.62 -1.1
47,011 - HMPREF1058_RS12735 0.62 -1.7
47,011 - HMPREF1058_RS12735 0.62 +2.0
47,260 + HMPREF1058_RS12735 0.74 -0.6
47,261 - HMPREF1058_RS12735 0.74 -0.8
47,262 + HMPREF1058_RS12735 0.74 -0.6
47,262 + HMPREF1058_RS12735 0.74 -0.9
47,263 - +1.0
47,343 + -0.4
47,469 + HMPREF1058_RS12735 0.84 -0.8
47,470 - +0.0
47,470 - HMPREF1058_RS12735 0.84 -2.1
47,671 + -0.8
47,717 - +0.6
47,717 - -3.3
47,760 + -0.2
47,760 + -1.4
47,760 + -1.1
47,761 - -0.4
47,797 - -0.7
47,880 - HMPREF1058_RS12730 0.23 -0.0
47,968 + HMPREF1058_RS12730 0.41 -0.4
47,969 - HMPREF1058_RS12730 0.42 -0.0
47,974 - HMPREF1058_RS12730 0.43 -0.0
47,997 + HMPREF1058_RS12730 0.48 -0.1
48,022 - HMPREF1058_RS12730 0.53 -0.9
48,106 - HMPREF1058_RS12730 0.71 -3.4
48,139 + HMPREF1058_RS12730 0.78 -0.7
48,140 - HMPREF1058_RS12730 0.78 -0.3
48,174 + HMPREF1058_RS12730 0.85 +0.2
48,243 + +1.0
48,244 - +1.3
48,245 + -0.6
48,245 + -2.3
48,246 - -1.0
48,248 - +0.3
48,248 - -3.2
48,248 - -0.1
48,248 - -0.1
48,416 + HMPREF1058_RS12725 0.23 -1.2
48,417 - HMPREF1058_RS12725 0.23 -0.9
48,474 - HMPREF1058_RS12725 0.31 -0.6
48,488 + HMPREF1058_RS12725 0.33 -1.2
48,489 - HMPREF1058_RS12725 0.33 +0.0
48,503 - HMPREF1058_RS12725 0.35 -0.3
48,503 - HMPREF1058_RS12725 0.35 +0.6
48,542 + HMPREF1058_RS12725 0.41 -0.2
48,578 - HMPREF1058_RS12725 0.46 +1.7
48,645 + HMPREF1058_RS12725 0.55 -0.8
48,651 - HMPREF1058_RS12725 0.56 -0.0
48,692 - HMPREF1058_RS12725 0.62 +0.3
48,693 + HMPREF1058_RS12725 0.62 -0.6
48,694 - HMPREF1058_RS12725 0.62 -1.1
48,736 + HMPREF1058_RS12725 0.68 +2.6
48,769 - HMPREF1058_RS12725 0.73 +0.0

Or see this region's nucleotide sequence