Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12510 and HMPREF1058_RS0119590 are separated by 348 nucleotides HMPREF1058_RS0119590 and HMPREF1058_RS12505 are separated by 128 nucleotides HMPREF1058_RS12505 and HMPREF1058_RS12500 are separated by 10 nucleotides HMPREF1058_RS12500 and HMPREF1058_RS12495 are separated by 36 nucleotides
HMPREF1058_RS12510: HMPREF1058_RS12510 - glycyl-radical enzyme activating protein, at 90,952 to 91,860
_RS12510
HMPREF1058_RS0119590: HMPREF1058_RS0119590 - Xaa-Pro aminopeptidase, at 92,209 to 92,433
_RS0119590
HMPREF1058_RS12505: HMPREF1058_RS12505 - RNA polymerase factor sigma-54, at 92,562 to 94,031
_RS12505
HMPREF1058_RS12500: HMPREF1058_RS12500 - phosphatase PAP2 family protein, at 94,042 to 94,698
_RS12500
HMPREF1058_RS12495: HMPREF1058_RS12495 - glycine cleavage system protein GcvH, at 94,735 to 95,115
_RS12495
Position (kb)
92
93
94
95 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 91.597 kb on + strand, within HMPREF1058_RS12510 at 91.597 kb on + strand, within HMPREF1058_RS12510 at 91.597 kb on + strand, within HMPREF1058_RS12510 at 91.598 kb on - strand, within HMPREF1058_RS12510 at 91.598 kb on - strand, within HMPREF1058_RS12510 at 91.605 kb on + strand, within HMPREF1058_RS12510 at 91.647 kb on - strand at 91.704 kb on - strand, within HMPREF1058_RS12510 at 91.719 kb on + strand, within HMPREF1058_RS12510 at 91.721 kb on + strand, within HMPREF1058_RS12510 at 91.721 kb on + strand, within HMPREF1058_RS12510 at 91.752 kb on + strand, within HMPREF1058_RS12510 at 91.756 kb on + strand, within HMPREF1058_RS12510 at 91.756 kb on + strand, within HMPREF1058_RS12510 at 91.757 kb on - strand, within HMPREF1058_RS12510 at 91.757 kb on - strand, within HMPREF1058_RS12510 at 91.773 kb on + strand at 91.774 kb on - strand at 91.800 kb on - strand at 91.814 kb on + strand at 91.815 kb on - strand at 91.862 kb on + strand at 91.862 kb on + strand at 91.862 kb on + strand at 91.863 kb on - strand at 91.863 kb on - strand at 91.863 kb on - strand at 91.863 kb on - strand at 91.864 kb on + strand at 91.865 kb on - strand at 91.865 kb on - strand at 91.865 kb on - strand at 91.883 kb on - strand at 91.967 kb on - strand at 92.029 kb on - strand at 92.029 kb on - strand at 92.035 kb on - strand at 92.036 kb on + strand at 92.036 kb on + strand at 92.037 kb on - strand at 92.040 kb on + strand at 92.051 kb on - strand at 92.052 kb on + strand at 92.053 kb on - strand at 92.053 kb on - strand at 92.055 kb on + strand at 92.101 kb on - strand at 92.247 kb on + strand, within HMPREF1058_RS0119590 at 92.247 kb on + strand, within HMPREF1058_RS0119590 at 92.248 kb on - strand, within HMPREF1058_RS0119590 at 92.248 kb on - strand, within HMPREF1058_RS0119590 at 92.248 kb on - strand, within HMPREF1058_RS0119590 at 92.248 kb on - strand, within HMPREF1058_RS0119590 at 92.252 kb on + strand, within HMPREF1058_RS0119590 at 92.253 kb on - strand, within HMPREF1058_RS0119590 at 92.253 kb on - strand, within HMPREF1058_RS0119590 at 92.298 kb on - strand at 92.307 kb on + strand, within HMPREF1058_RS0119590 at 92.331 kb on + strand at 92.331 kb on + strand, within HMPREF1058_RS0119590 at 92.331 kb on + strand, within HMPREF1058_RS0119590 at 92.331 kb on + strand, within HMPREF1058_RS0119590 at 92.398 kb on - strand, within HMPREF1058_RS0119590 at 92.398 kb on - strand, within HMPREF1058_RS0119590 at 92.414 kb on + strand at 92.415 kb on - strand at 92.433 kb on + strand at 92.452 kb on + strand at 92.453 kb on - strand at 92.508 kb on + strand at 92.511 kb on + strand at 92.608 kb on + strand at 92.861 kb on + strand, within HMPREF1058_RS12505 at 92.957 kb on + strand, within HMPREF1058_RS12505 at 92.957 kb on + strand, within HMPREF1058_RS12505 at 93.073 kb on - strand, within HMPREF1058_RS12505 at 93.074 kb on + strand, within HMPREF1058_RS12505 at 93.169 kb on + strand, within HMPREF1058_RS12505 at 93.175 kb on + strand, within HMPREF1058_RS12505 at 93.176 kb on - strand at 93.284 kb on + strand, within HMPREF1058_RS12505 at 93.414 kb on + strand, within HMPREF1058_RS12505 at 93.431 kb on + strand, within HMPREF1058_RS12505 at 93.453 kb on - strand, within HMPREF1058_RS12505 at 93.560 kb on - strand, within HMPREF1058_RS12505 at 93.646 kb on + strand, within HMPREF1058_RS12505 at 93.646 kb on + strand, within HMPREF1058_RS12505 at 93.647 kb on - strand, within HMPREF1058_RS12505 at 93.775 kb on + strand, within HMPREF1058_RS12505 at 93.792 kb on - strand, within HMPREF1058_RS12505 at 94.029 kb on + strand at 94.034 kb on + strand at 94.040 kb on - strand at 94.040 kb on - strand at 94.077 kb on - strand at 94.113 kb on + strand, within HMPREF1058_RS12500 at 94.114 kb on - strand, within HMPREF1058_RS12500 at 94.140 kb on + strand, within HMPREF1058_RS12500 at 94.140 kb on + strand, within HMPREF1058_RS12500 at 94.184 kb on - strand, within HMPREF1058_RS12500 at 94.191 kb on + strand, within HMPREF1058_RS12500 at 94.217 kb on + strand, within HMPREF1058_RS12500 at 94.218 kb on - strand, within HMPREF1058_RS12500 at 94.229 kb on + strand, within HMPREF1058_RS12500 at 94.230 kb on - strand, within HMPREF1058_RS12500 at 94.271 kb on - strand, within HMPREF1058_RS12500 at 94.339 kb on + strand, within HMPREF1058_RS12500 at 94.350 kb on + strand, within HMPREF1058_RS12500 at 94.386 kb on + strand, within HMPREF1058_RS12500 at 94.387 kb on - strand, within HMPREF1058_RS12500 at 94.408 kb on - strand, within HMPREF1058_RS12500 at 94.537 kb on - strand, within HMPREF1058_RS12500 at 94.617 kb on - strand, within HMPREF1058_RS12500 at 94.627 kb on - strand, within HMPREF1058_RS12500 at 94.627 kb on - strand, within HMPREF1058_RS12500 at 94.631 kb on + strand, within HMPREF1058_RS12500 at 94.632 kb on - strand, within HMPREF1058_RS12500 at 94.634 kb on + strand at 94.754 kb on + strand at 94.787 kb on + strand, within HMPREF1058_RS12495 at 94.799 kb on + strand at 94.799 kb on + strand, within HMPREF1058_RS12495 at 94.799 kb on + strand, within HMPREF1058_RS12495 at 94.799 kb on + strand, within HMPREF1058_RS12495 at 94.804 kb on + strand, within HMPREF1058_RS12495 at 94.856 kb on + strand, within HMPREF1058_RS12495
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source remove 91,597 + HMPREF1058_RS12510 0.71 +0.3 91,597 + HMPREF1058_RS12510 0.71 -0.7 91,597 + HMPREF1058_RS12510 0.71 +0.2 91,598 - HMPREF1058_RS12510 0.71 -0.1 91,598 - HMPREF1058_RS12510 0.71 +1.6 91,605 + HMPREF1058_RS12510 0.72 -0.7 91,647 - +1.0 91,704 - HMPREF1058_RS12510 0.83 -0.1 91,719 + HMPREF1058_RS12510 0.84 -0.1 91,721 + HMPREF1058_RS12510 0.85 +0.4 91,721 + HMPREF1058_RS12510 0.85 +0.6 91,752 + HMPREF1058_RS12510 0.88 +0.2 91,756 + HMPREF1058_RS12510 0.88 +0.4 91,756 + HMPREF1058_RS12510 0.88 +0.7 91,757 - HMPREF1058_RS12510 0.89 -0.1 91,757 - HMPREF1058_RS12510 0.89 +2.1 91,773 + +0.4 91,774 - -0.4 91,800 - -1.0 91,814 + -0.1 91,815 - +0.6 91,862 + +0.5 91,862 + -1.4 91,862 + -0.2 91,863 - +0.3 91,863 - +0.1 91,863 - -1.4 91,863 - -3.5 91,864 + +0.2 91,865 - -0.9 91,865 - -0.5 91,865 - +0.2 91,883 - -0.2 91,967 - -0.6 92,029 - -0.4 92,029 - -1.7 92,035 - -0.6 92,036 + -0.1 92,036 + +0.2 92,037 - +0.5 92,040 + +0.0 92,051 - -0.6 92,052 + +1.1 92,053 - +1.2 92,053 - -0.5 92,055 + +0.2 92,101 - +0.0 92,247 + HMPREF1058_RS0119590 0.17 +0.7 92,247 + HMPREF1058_RS0119590 0.17 -1.6 92,248 - HMPREF1058_RS0119590 0.17 -1.2 92,248 - HMPREF1058_RS0119590 0.17 +1.1 92,248 - HMPREF1058_RS0119590 0.17 +0.7 92,248 - HMPREF1058_RS0119590 0.17 +0.6 92,252 + HMPREF1058_RS0119590 0.19 +0.0 92,253 - HMPREF1058_RS0119590 0.20 -1.7 92,253 - HMPREF1058_RS0119590 0.20 +0.3 92,298 - +0.7 92,307 + HMPREF1058_RS0119590 0.44 +1.1 92,331 + +0.3 92,331 + HMPREF1058_RS0119590 0.54 +0.1 92,331 + HMPREF1058_RS0119590 0.54 +1.1 92,331 + HMPREF1058_RS0119590 0.54 -0.8 92,398 - HMPREF1058_RS0119590 0.84 -0.7 92,398 - HMPREF1058_RS0119590 0.84 -0.2 92,414 + -1.6 92,415 - +0.2 92,433 + -1.5 92,452 + -1.9 92,453 - +0.2 92,508 + -0.2 92,511 + +0.6 92,608 + -1.2 92,861 + HMPREF1058_RS12505 0.20 -1.0 92,957 + HMPREF1058_RS12505 0.27 -0.8 92,957 + HMPREF1058_RS12505 0.27 -2.5 93,073 - HMPREF1058_RS12505 0.35 -0.8 93,074 + HMPREF1058_RS12505 0.35 +1.0 93,169 + HMPREF1058_RS12505 0.41 -1.9 93,175 + HMPREF1058_RS12505 0.42 -0.2 93,176 - +1.0 93,284 + HMPREF1058_RS12505 0.49 -1.6 93,414 + HMPREF1058_RS12505 0.58 -0.6 93,431 + HMPREF1058_RS12505 0.59 -0.4 93,453 - HMPREF1058_RS12505 0.61 -0.4 93,560 - HMPREF1058_RS12505 0.68 +0.6 93,646 + HMPREF1058_RS12505 0.74 -0.8 93,646 + HMPREF1058_RS12505 0.74 -1.1 93,647 - HMPREF1058_RS12505 0.74 +1.0 93,775 + HMPREF1058_RS12505 0.83 -3.0 93,792 - HMPREF1058_RS12505 0.84 +0.6 94,029 + +0.5 94,034 + -0.4 94,040 - -0.2 94,040 - -0.6 94,077 - +0.7 94,113 + HMPREF1058_RS12500 0.11 -0.9 94,114 - HMPREF1058_RS12500 0.11 +0.5 94,140 + HMPREF1058_RS12500 0.15 +0.7 94,140 + HMPREF1058_RS12500 0.15 +0.4 94,184 - HMPREF1058_RS12500 0.22 -0.4 94,191 + HMPREF1058_RS12500 0.23 -0.9 94,217 + HMPREF1058_RS12500 0.27 -0.6 94,218 - HMPREF1058_RS12500 0.27 -0.0 94,229 + HMPREF1058_RS12500 0.28 -0.2 94,230 - HMPREF1058_RS12500 0.29 +1.3 94,271 - HMPREF1058_RS12500 0.35 -1.1 94,339 + HMPREF1058_RS12500 0.45 -0.1 94,350 + HMPREF1058_RS12500 0.47 +0.5 94,386 + HMPREF1058_RS12500 0.52 -0.8 94,387 - HMPREF1058_RS12500 0.53 +1.9 94,408 - HMPREF1058_RS12500 0.56 +0.1 94,537 - HMPREF1058_RS12500 0.75 -0.1 94,617 - HMPREF1058_RS12500 0.88 -2.2 94,627 - HMPREF1058_RS12500 0.89 -0.4 94,627 - HMPREF1058_RS12500 0.89 -0.2 94,631 + HMPREF1058_RS12500 0.90 -0.7 94,632 - HMPREF1058_RS12500 0.90 -0.5 94,634 + -1.3 94,754 + +1.2 94,787 + HMPREF1058_RS12495 0.14 +0.6 94,799 + -1.2 94,799 + HMPREF1058_RS12495 0.17 -1.0 94,799 + HMPREF1058_RS12495 0.17 +0.0 94,799 + HMPREF1058_RS12495 0.17 -0.3 94,804 + HMPREF1058_RS12495 0.18 -0.5 94,856 + HMPREF1058_RS12495 0.32 +0.2
Or see this region's nucleotide sequence