Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12120 and HMPREF1058_RS12115 are separated by 63 nucleotides HMPREF1058_RS12115 and HMPREF1058_RS12110 are separated by 4 nucleotides HMPREF1058_RS12110 and HMPREF1058_RS12105 are separated by 41 nucleotides HMPREF1058_RS12105 and HMPREF1058_RS12100 overlap by 4 nucleotides
HMPREF1058_RS12120: HMPREF1058_RS12120 - RNA polymerase sigma factor, at 196,507 to 197,016
_RS12120
HMPREF1058_RS12115: HMPREF1058_RS12115 - acetylglutamate kinase, at 197,080 to 197,853
_RS12115
HMPREF1058_RS12110: HMPREF1058_RS12110 - biosynthetic arginine decarboxylase, at 197,858 to 199,750
_RS12110
HMPREF1058_RS12105: HMPREF1058_RS12105 - shikimate kinase, at 199,792 to 200,319
_RS12105
HMPREF1058_RS12100: HMPREF1058_RS12100 - type I DNA topoisomerase, at 200,316 to 202,754
_RS12100
Position (kb) 197
198
199
200 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 196.947 kb on + strand, within HMPREF1058_RS12120 at 196.964 kb on + strand, within HMPREF1058_RS12120 at 196.965 kb on - strand, within HMPREF1058_RS12120 at 197.024 kb on + strand at 197.135 kb on - strand at 197.135 kb on - strand at 197.245 kb on - strand, within HMPREF1058_RS12115 at 197.287 kb on + strand, within HMPREF1058_RS12115 at 197.288 kb on - strand, within HMPREF1058_RS12115 at 197.310 kb on - strand, within HMPREF1058_RS12115 at 197.368 kb on - strand, within HMPREF1058_RS12115 at 197.471 kb on - strand, within HMPREF1058_RS12115 at 197.625 kb on - strand, within HMPREF1058_RS12115 at 197.626 kb on + strand, within HMPREF1058_RS12115 at 197.626 kb on + strand, within HMPREF1058_RS12115 at 197.626 kb on + strand, within HMPREF1058_RS12115 at 197.627 kb on - strand, within HMPREF1058_RS12115 at 197.627 kb on - strand at 197.699 kb on - strand, within HMPREF1058_RS12115 at 197.751 kb on + strand, within HMPREF1058_RS12115 at 197.751 kb on + strand, within HMPREF1058_RS12115 at 197.761 kb on + strand, within HMPREF1058_RS12115 at 197.761 kb on + strand, within HMPREF1058_RS12115 at 197.761 kb on + strand, within HMPREF1058_RS12115 at 197.790 kb on + strand at 197.830 kb on + strand at 197.831 kb on - strand at 197.835 kb on + strand at 197.857 kb on - strand at 197.868 kb on + strand at 197.872 kb on + strand at 197.872 kb on + strand at 197.873 kb on - strand at 197.880 kb on + strand at 197.881 kb on - strand at 197.896 kb on - strand at 197.899 kb on + strand at 197.899 kb on + strand at 197.975 kb on - strand at 197.997 kb on + strand at 197.997 kb on + strand at 197.998 kb on - strand at 198.006 kb on + strand at 198.007 kb on - strand at 198.041 kb on + strand at 198.095 kb on - strand, within HMPREF1058_RS12110 at 198.152 kb on + strand, within HMPREF1058_RS12110 at 198.153 kb on - strand, within HMPREF1058_RS12110 at 198.153 kb on - strand, within HMPREF1058_RS12110 at 198.159 kb on - strand, within HMPREF1058_RS12110 at 198.161 kb on - strand, within HMPREF1058_RS12110 at 198.163 kb on - strand, within HMPREF1058_RS12110 at 198.209 kb on + strand, within HMPREF1058_RS12110 at 198.210 kb on - strand, within HMPREF1058_RS12110 at 198.210 kb on - strand, within HMPREF1058_RS12110 at 198.226 kb on + strand, within HMPREF1058_RS12110 at 198.274 kb on + strand, within HMPREF1058_RS12110 at 198.326 kb on + strand, within HMPREF1058_RS12110 at 198.480 kb on + strand, within HMPREF1058_RS12110 at 198.492 kb on - strand at 198.534 kb on - strand, within HMPREF1058_RS12110 at 198.757 kb on + strand, within HMPREF1058_RS12110 at 198.809 kb on - strand, within HMPREF1058_RS12110 at 198.822 kb on + strand, within HMPREF1058_RS12110 at 198.837 kb on + strand, within HMPREF1058_RS12110 at 198.838 kb on - strand, within HMPREF1058_RS12110 at 199.010 kb on + strand at 199.011 kb on - strand, within HMPREF1058_RS12110 at 199.012 kb on + strand, within HMPREF1058_RS12110 at 199.168 kb on + strand, within HMPREF1058_RS12110 at 199.173 kb on - strand, within HMPREF1058_RS12110 at 199.178 kb on - strand, within HMPREF1058_RS12110 at 199.178 kb on - strand, within HMPREF1058_RS12110 at 199.308 kb on + strand, within HMPREF1058_RS12110 at 199.487 kb on - strand, within HMPREF1058_RS12110 at 199.488 kb on + strand, within HMPREF1058_RS12110 at 199.513 kb on + strand, within HMPREF1058_RS12110 at 199.537 kb on + strand, within HMPREF1058_RS12110 at 199.573 kb on + strand at 199.574 kb on - strand at 199.574 kb on - strand at 199.659 kb on - strand at 199.713 kb on + strand at 199.713 kb on + strand at 199.775 kb on + strand at 199.776 kb on - strand at 199.785 kb on + strand at 199.785 kb on + strand at 199.786 kb on - strand at 199.787 kb on + strand at 199.789 kb on + strand at 199.790 kb on - strand at 199.793 kb on + strand at 199.797 kb on + strand at 199.846 kb on - strand, within HMPREF1058_RS12105 at 200.049 kb on + strand, within HMPREF1058_RS12105 at 200.050 kb on - strand, within HMPREF1058_RS12105 at 200.051 kb on + strand, within HMPREF1058_RS12105 at 200.051 kb on + strand, within HMPREF1058_RS12105 at 200.052 kb on - strand, within HMPREF1058_RS12105 at 200.196 kb on + strand, within HMPREF1058_RS12105 at 200.269 kb on + strand at 200.294 kb on + strand at 200.294 kb on + strand at 200.295 kb on - strand at 200.299 kb on + strand at 200.302 kb on + strand at 200.310 kb on + strand at 200.310 kb on + strand at 200.310 kb on + strand at 200.343 kb on + strand at 200.442 kb on - strand at 200.558 kb on - strand at 200.643 kb on - strand, within HMPREF1058_RS12100 at 200.735 kb on - strand, within HMPREF1058_RS12100
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source remove 196,947 + HMPREF1058_RS12120 0.86 -0.5 196,964 + HMPREF1058_RS12120 0.90 +0.2 196,965 - HMPREF1058_RS12120 0.90 -0.4 197,024 + -0.3 197,135 - -2.1 197,135 - -1.8 197,245 - HMPREF1058_RS12115 0.21 -3.0 197,287 + HMPREF1058_RS12115 0.27 -1.6 197,288 - HMPREF1058_RS12115 0.27 -1.2 197,310 - HMPREF1058_RS12115 0.30 -4.2 197,368 - HMPREF1058_RS12115 0.37 -4.7 197,471 - HMPREF1058_RS12115 0.51 -2.8 197,625 - HMPREF1058_RS12115 0.70 -2.2 197,626 + HMPREF1058_RS12115 0.71 -2.7 197,626 + HMPREF1058_RS12115 0.71 -4.6 197,626 + HMPREF1058_RS12115 0.71 -3.2 197,627 - HMPREF1058_RS12115 0.71 -2.5 197,627 - -1.4 197,699 - HMPREF1058_RS12115 0.80 -4.3 197,751 + HMPREF1058_RS12115 0.87 -2.9 197,751 + HMPREF1058_RS12115 0.87 -4.4 197,761 + HMPREF1058_RS12115 0.88 -4.0 197,761 + HMPREF1058_RS12115 0.88 -3.6 197,761 + HMPREF1058_RS12115 0.88 -3.2 197,790 + -1.2 197,830 + -3.3 197,831 - -2.6 197,835 + -2.4 197,857 - -0.4 197,868 + -2.4 197,872 + -3.1 197,872 + -2.5 197,873 - -0.7 197,880 + -3.7 197,881 - -0.5 197,896 - -0.4 197,899 + -4.6 197,899 + -3.0 197,975 - -2.1 197,997 + -2.6 197,997 + -2.2 197,998 - -1.5 198,006 + -3.5 198,007 - -0.3 198,041 + -3.2 198,095 - HMPREF1058_RS12110 0.13 -1.9 198,152 + HMPREF1058_RS12110 0.16 -3.2 198,153 - HMPREF1058_RS12110 0.16 -1.6 198,153 - HMPREF1058_RS12110 0.16 -1.2 198,159 - HMPREF1058_RS12110 0.16 -3.2 198,161 - HMPREF1058_RS12110 0.16 -0.3 198,163 - HMPREF1058_RS12110 0.16 -2.3 198,209 + HMPREF1058_RS12110 0.19 -2.8 198,210 - HMPREF1058_RS12110 0.19 -0.6 198,210 - HMPREF1058_RS12110 0.19 -2.1 198,226 + HMPREF1058_RS12110 0.19 -3.2 198,274 + HMPREF1058_RS12110 0.22 -1.0 198,326 + HMPREF1058_RS12110 0.25 -2.8 198,480 + HMPREF1058_RS12110 0.33 -2.9 198,492 - -2.1 198,534 - HMPREF1058_RS12110 0.36 -1.9 198,757 + HMPREF1058_RS12110 0.47 -3.2 198,809 - HMPREF1058_RS12110 0.50 -1.8 198,822 + HMPREF1058_RS12110 0.51 -3.1 198,837 + HMPREF1058_RS12110 0.52 -2.4 198,838 - HMPREF1058_RS12110 0.52 -1.4 199,010 + -0.8 199,011 - HMPREF1058_RS12110 0.61 -1.4 199,012 + HMPREF1058_RS12110 0.61 -2.2 199,168 + HMPREF1058_RS12110 0.69 -2.9 199,173 - HMPREF1058_RS12110 0.69 -2.1 199,178 - HMPREF1058_RS12110 0.70 +0.6 199,178 - HMPREF1058_RS12110 0.70 -1.9 199,308 + HMPREF1058_RS12110 0.77 -1.7 199,487 - HMPREF1058_RS12110 0.86 -2.2 199,488 + HMPREF1058_RS12110 0.86 -0.7 199,513 + HMPREF1058_RS12110 0.87 -4.0 199,537 + HMPREF1058_RS12110 0.89 -3.1 199,573 + -2.0 199,574 - -1.6 199,574 - -1.5 199,659 - -0.6 199,713 + -3.4 199,713 + -2.8 199,775 + -1.2 199,776 - -1.2 199,785 + -2.5 199,785 + -2.5 199,786 - -1.0 199,787 + -2.3 199,789 + -2.8 199,790 - -0.8 199,793 + -4.3 199,797 + -2.0 199,846 - HMPREF1058_RS12105 0.10 -3.6 200,049 + HMPREF1058_RS12105 0.49 -1.8 200,050 - HMPREF1058_RS12105 0.49 -2.1 200,051 + HMPREF1058_RS12105 0.49 +0.6 200,051 + HMPREF1058_RS12105 0.49 -3.0 200,052 - HMPREF1058_RS12105 0.49 -1.3 200,196 + HMPREF1058_RS12105 0.77 -1.6 200,269 + -3.3 200,294 + -4.2 200,294 + -1.9 200,295 - -1.3 200,299 + -1.7 200,302 + +0.3 200,310 + -3.2 200,310 + -2.2 200,310 + -4.1 200,343 + +0.0 200,442 - -1.7 200,558 - +1.1 200,643 - HMPREF1058_RS12100 0.13 -0.8 200,735 - HMPREF1058_RS12100 0.17 -1.5
Or see this region's nucleotide sequence