Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11895 and HMPREF1058_RS11890 are separated by 3 nucleotides HMPREF1058_RS11890 and HMPREF1058_RS11885 are separated by 126 nucleotides
HMPREF1058_RS11895: HMPREF1058_RS11895 - lipopolysaccharide biosynthesis protein, at 250,904 to 252,349
_RS11895
HMPREF1058_RS11890: HMPREF1058_RS11890 - Holliday junction branch migration DNA helicase RuvB, at 252,353 to 253,381
_RS11890
HMPREF1058_RS11885: HMPREF1058_RS11885 - site-specific integrase, at 253,508 to 254,626
_RS11885
Position (kb) 252
253
254 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 252.385 kb on - strand at 252.407 kb on - strand at 252.407 kb on - strand at 252.450 kb on - strand at 252.564 kb on - strand, within HMPREF1058_RS11890 at 252.565 kb on + strand, within HMPREF1058_RS11890 at 252.566 kb on - strand, within HMPREF1058_RS11890 at 252.569 kb on - strand, within HMPREF1058_RS11890 at 252.569 kb on - strand, within HMPREF1058_RS11890 at 252.571 kb on + strand, within HMPREF1058_RS11890 at 252.590 kb on + strand, within HMPREF1058_RS11890 at 252.786 kb on - strand, within HMPREF1058_RS11890 at 252.787 kb on + strand, within HMPREF1058_RS11890 at 252.791 kb on - strand, within HMPREF1058_RS11890 at 252.818 kb on + strand, within HMPREF1058_RS11890 at 253.017 kb on - strand, within HMPREF1058_RS11890 at 253.038 kb on - strand, within HMPREF1058_RS11890 at 253.106 kb on - strand, within HMPREF1058_RS11890 at 253.166 kb on - strand, within HMPREF1058_RS11890 at 253.417 kb on - strand at 253.516 kb on + strand at 253.576 kb on + strand at 253.707 kb on + strand, within HMPREF1058_RS11885 at 253.718 kb on + strand, within HMPREF1058_RS11885 at 253.735 kb on - strand, within HMPREF1058_RS11885 at 253.791 kb on - strand, within HMPREF1058_RS11885 at 253.808 kb on + strand, within HMPREF1058_RS11885 at 253.808 kb on + strand, within HMPREF1058_RS11885 at 254.038 kb on + strand, within HMPREF1058_RS11885 at 254.148 kb on + strand, within HMPREF1058_RS11885 at 254.200 kb on - strand, within HMPREF1058_RS11885 at 254.216 kb on - strand, within HMPREF1058_RS11885 at 254.216 kb on - strand, within HMPREF1058_RS11885 at 254.216 kb on - strand, within HMPREF1058_RS11885 at 254.248 kb on + strand, within HMPREF1058_RS11885 at 254.249 kb on - strand, within HMPREF1058_RS11885 at 254.254 kb on - strand, within HMPREF1058_RS11885 at 254.338 kb on + strand, within HMPREF1058_RS11885 at 254.338 kb on + strand, within HMPREF1058_RS11885 at 254.339 kb on - strand, within HMPREF1058_RS11885
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source remove 252,385 - -0.5 252,407 - -0.4 252,407 - -0.1 252,450 - +0.6 252,564 - HMPREF1058_RS11890 0.21 -2.1 252,565 + HMPREF1058_RS11890 0.21 +0.4 252,566 - HMPREF1058_RS11890 0.21 -0.7 252,569 - HMPREF1058_RS11890 0.21 -0.2 252,569 - HMPREF1058_RS11890 0.21 -0.2 252,571 + HMPREF1058_RS11890 0.21 +0.6 252,590 + HMPREF1058_RS11890 0.23 -0.9 252,786 - HMPREF1058_RS11890 0.42 -0.2 252,787 + HMPREF1058_RS11890 0.42 -0.5 252,791 - HMPREF1058_RS11890 0.43 -0.4 252,818 + HMPREF1058_RS11890 0.45 -1.5 253,017 - HMPREF1058_RS11890 0.65 -0.7 253,038 - HMPREF1058_RS11890 0.67 +0.3 253,106 - HMPREF1058_RS11890 0.73 -0.6 253,166 - HMPREF1058_RS11890 0.79 -0.2 253,417 - +0.4 253,516 + -0.1 253,576 + +0.9 253,707 + HMPREF1058_RS11885 0.18 +0.5 253,718 + HMPREF1058_RS11885 0.19 +1.0 253,735 - HMPREF1058_RS11885 0.20 +0.8 253,791 - HMPREF1058_RS11885 0.25 -0.7 253,808 + HMPREF1058_RS11885 0.27 -0.1 253,808 + HMPREF1058_RS11885 0.27 -0.5 254,038 + HMPREF1058_RS11885 0.47 -0.3 254,148 + HMPREF1058_RS11885 0.57 +0.0 254,200 - HMPREF1058_RS11885 0.62 +1.0 254,216 - HMPREF1058_RS11885 0.63 +0.1 254,216 - HMPREF1058_RS11885 0.63 +0.6 254,216 - HMPREF1058_RS11885 0.63 -1.4 254,248 + HMPREF1058_RS11885 0.66 -1.6 254,249 - HMPREF1058_RS11885 0.66 +0.5 254,254 - HMPREF1058_RS11885 0.67 +0.5 254,338 + HMPREF1058_RS11885 0.74 -0.4 254,338 + HMPREF1058_RS11885 0.74 -3.2 254,339 - HMPREF1058_RS11885 0.74 +0.4
Or see this region's nucleotide sequence