Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS11510

Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS11525 and HMPREF1058_RS11520 are separated by 157 nucleotidesHMPREF1058_RS11520 and HMPREF1058_RS11515 overlap by 1 nucleotidesHMPREF1058_RS11515 and HMPREF1058_RS11510 are separated by 6 nucleotidesHMPREF1058_RS11510 and HMPREF1058_RS11505 are separated by 180 nucleotides HMPREF1058_RS11525: HMPREF1058_RS11525 - excinuclease ABC subunit UvrC, at 358,551 to 360,371 _RS11525 HMPREF1058_RS11520: HMPREF1058_RS11520 - D-tyrosyl-tRNA(Tyr) deacylase, at 360,529 to 360,981 _RS11520 HMPREF1058_RS11515: HMPREF1058_RS11515 - nucleotide pyrophosphohydrolase, at 360,981 to 361,301 _RS11515 HMPREF1058_RS11510: HMPREF1058_RS11510 - deoxyribose-phosphate aldolase, at 361,308 to 362,255 _RS11510 HMPREF1058_RS11505: HMPREF1058_RS11505 - polyprenyl synthetase family protein, at 362,436 to 363,410 _RS11505 Position (kb) 361 362 363Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 360.326 kb on - strandat 360.393 kb on + strandat 360.393 kb on + strandat 360.394 kb on - strandat 360.394 kb on - strandat 360.394 kb on - strandat 360.400 kb on - strandat 360.402 kb on + strandat 360.453 kb on - strandat 360.453 kb on - strandat 360.453 kb on - strandat 360.453 kb on - strandat 360.465 kb on - strandat 360.493 kb on + strandat 360.515 kb on + strandat 360.525 kb on - strandat 360.529 kb on - strandat 360.537 kb on - strandat 360.746 kb on + strand, within HMPREF1058_RS11520at 360.747 kb on - strand, within HMPREF1058_RS11520at 360.805 kb on + strand, within HMPREF1058_RS11520at 360.830 kb on + strand, within HMPREF1058_RS11520at 360.830 kb on + strand, within HMPREF1058_RS11520at 360.890 kb on + strand, within HMPREF1058_RS11520at 360.890 kb on + strand, within HMPREF1058_RS11520at 360.948 kb on + strandat 360.949 kb on - strandat 360.951 kb on + strandat 360.952 kb on - strandat 360.952 kb on - strandat 360.954 kb on - strandat 360.957 kb on + strandat 360.957 kb on + strandat 360.958 kb on - strandat 360.958 kb on - strandat 360.958 kb on - strandat 360.958 kb on - strandat 360.980 kb on - strandat 361.029 kb on + strand, within HMPREF1058_RS11515at 361.029 kb on + strand, within HMPREF1058_RS11515at 361.030 kb on - strand, within HMPREF1058_RS11515at 361.036 kb on + strand, within HMPREF1058_RS11515at 361.036 kb on + strand, within HMPREF1058_RS11515at 361.036 kb on + strand, within HMPREF1058_RS11515at 361.041 kb on + strand, within HMPREF1058_RS11515at 361.117 kb on - strand, within HMPREF1058_RS11515at 361.177 kb on + strand, within HMPREF1058_RS11515at 361.177 kb on + strand, within HMPREF1058_RS11515at 361.178 kb on - strand, within HMPREF1058_RS11515at 361.216 kb on + strand, within HMPREF1058_RS11515at 361.263 kb on - strand, within HMPREF1058_RS11515at 361.298 kb on - strandat 361.307 kb on + strandat 361.317 kb on - strandat 361.383 kb on + strandat 361.406 kb on + strand, within HMPREF1058_RS11510at 361.407 kb on - strand, within HMPREF1058_RS11510at 361.433 kb on - strand, within HMPREF1058_RS11510at 361.451 kb on - strand, within HMPREF1058_RS11510at 361.619 kb on - strand, within HMPREF1058_RS11510at 361.633 kb on + strand, within HMPREF1058_RS11510at 361.634 kb on - strand, within HMPREF1058_RS11510at 361.640 kb on + strand, within HMPREF1058_RS11510at 361.644 kb on - strand, within HMPREF1058_RS11510at 361.644 kb on - strand, within HMPREF1058_RS11510at 361.690 kb on + strand, within HMPREF1058_RS11510at 361.690 kb on + strand, within HMPREF1058_RS11510at 361.691 kb on - strand, within HMPREF1058_RS11510at 361.787 kb on - strand, within HMPREF1058_RS11510at 361.790 kb on + strand, within HMPREF1058_RS11510at 361.868 kb on - strand, within HMPREF1058_RS11510at 361.868 kb on - strand, within HMPREF1058_RS11510at 361.956 kb on + strand, within HMPREF1058_RS11510at 361.957 kb on - strand, within HMPREF1058_RS11510at 362.055 kb on + strand, within HMPREF1058_RS11510at 362.056 kb on - strand, within HMPREF1058_RS11510at 362.056 kb on - strand, within HMPREF1058_RS11510at 362.058 kb on - strand, within HMPREF1058_RS11510at 362.077 kb on + strand, within HMPREF1058_RS11510at 362.132 kb on + strand, within HMPREF1058_RS11510at 362.132 kb on + strand, within HMPREF1058_RS11510at 362.180 kb on - strandat 362.274 kb on - strandat 362.277 kb on + strandat 362.277 kb on + strandat 362.315 kb on + strandat 362.315 kb on + strandat 362.386 kb on - strandat 362.388 kb on - strandat 362.419 kb on + strandat 362.419 kb on + strandat 362.438 kb on - strandat 362.438 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
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360,326 - -0.5
360,393 + -0.2
360,393 + +0.1
360,394 - -1.7
360,394 - -2.1
360,394 - -0.8
360,400 - -2.3
360,402 + +0.3
360,453 - -0.2
360,453 - -1.2
360,453 - -2.2
360,453 - -0.9
360,465 - -2.3
360,493 + +1.0
360,515 + +0.6
360,525 - -2.5
360,529 - -3.0
360,537 - -0.0
360,746 + HMPREF1058_RS11520 0.48 +0.5
360,747 - HMPREF1058_RS11520 0.48 -2.4
360,805 + HMPREF1058_RS11520 0.61 +0.1
360,830 + HMPREF1058_RS11520 0.66 +0.3
360,830 + HMPREF1058_RS11520 0.66 -0.4
360,890 + HMPREF1058_RS11520 0.80 +2.3
360,890 + HMPREF1058_RS11520 0.80 -0.1
360,948 + -0.3
360,949 - -2.4
360,951 + -1.1
360,952 - -4.4
360,952 - -2.7
360,954 - -2.1
360,957 + -0.3
360,957 + -0.3
360,958 - -3.2
360,958 - -1.8
360,958 - -2.4
360,958 - -3.1
360,980 - -3.3
361,029 + HMPREF1058_RS11515 0.15 +0.0
361,029 + HMPREF1058_RS11515 0.15 +0.2
361,030 - HMPREF1058_RS11515 0.15 -2.5
361,036 + HMPREF1058_RS11515 0.17 -0.1
361,036 + HMPREF1058_RS11515 0.17 +0.4
361,036 + HMPREF1058_RS11515 0.17 +0.2
361,041 + HMPREF1058_RS11515 0.19 +0.6
361,117 - HMPREF1058_RS11515 0.42 -1.2
361,177 + HMPREF1058_RS11515 0.61 +0.9
361,177 + HMPREF1058_RS11515 0.61 -0.3
361,178 - HMPREF1058_RS11515 0.61 -3.7
361,216 + HMPREF1058_RS11515 0.73 +0.0
361,263 - HMPREF1058_RS11515 0.88 -0.7
361,298 - -2.5
361,307 + -1.3
361,317 - -2.7
361,383 + -1.3
361,406 + HMPREF1058_RS11510 0.10 -3.8
361,407 - HMPREF1058_RS11510 0.10 -2.3
361,433 - HMPREF1058_RS11510 0.13 -3.6
361,451 - HMPREF1058_RS11510 0.15 -3.1
361,619 - HMPREF1058_RS11510 0.33 -1.9
361,633 + HMPREF1058_RS11510 0.34 -4.3
361,634 - HMPREF1058_RS11510 0.34 -4.6
361,640 + HMPREF1058_RS11510 0.35 -2.9
361,644 - HMPREF1058_RS11510 0.35 -2.6
361,644 - HMPREF1058_RS11510 0.35 -2.6
361,690 + HMPREF1058_RS11510 0.40 -3.0
361,690 + HMPREF1058_RS11510 0.40 -3.5
361,691 - HMPREF1058_RS11510 0.40 -4.8
361,787 - HMPREF1058_RS11510 0.51 -1.5
361,790 + HMPREF1058_RS11510 0.51 -2.4
361,868 - HMPREF1058_RS11510 0.59 -2.5
361,868 - HMPREF1058_RS11510 0.59 +0.6
361,956 + HMPREF1058_RS11510 0.68 -2.3
361,957 - HMPREF1058_RS11510 0.68 -2.9
362,055 + HMPREF1058_RS11510 0.79 -1.9
362,056 - HMPREF1058_RS11510 0.79 -3.0
362,056 - HMPREF1058_RS11510 0.79 -5.0
362,058 - HMPREF1058_RS11510 0.79 -2.7
362,077 + HMPREF1058_RS11510 0.81 -2.9
362,132 + HMPREF1058_RS11510 0.87 -4.1
362,132 + HMPREF1058_RS11510 0.87 -3.5
362,180 - -2.7
362,274 - +1.7
362,277 + -1.1
362,277 + -0.4
362,315 + -2.1
362,315 + -2.6
362,386 - -1.0
362,388 - +0.8
362,419 + -0.4
362,419 + +1.0
362,438 - -0.8
362,438 - -1.7

Or see this region's nucleotide sequence