Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10945 and HMPREF1058_RS10940 are separated by 150 nucleotides HMPREF1058_RS10940 and HMPREF1058_RS10935 are separated by 288 nucleotides
HMPREF1058_RS10945: HMPREF1058_RS10945 - tRNA dihydrouridine synthase DusB, at 519,454 to 520,443
_RS10945
HMPREF1058_RS10940: HMPREF1058_RS10940 - U32 family peptidase, at 520,594 to 521,856
_RS10940
HMPREF1058_RS10935: HMPREF1058_RS10935 - RagB/SusD family nutrient uptake outer membrane protein, at 522,145 to 523,695
_RS10935
Position (kb) 520
521
522 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 519.661 kb on + strand, within HMPREF1058_RS10945 at 519.713 kb on - strand, within HMPREF1058_RS10945 at 519.713 kb on - strand, within HMPREF1058_RS10945 at 519.713 kb on - strand, within HMPREF1058_RS10945 at 519.715 kb on - strand, within HMPREF1058_RS10945 at 519.716 kb on + strand, within HMPREF1058_RS10945 at 519.716 kb on + strand, within HMPREF1058_RS10945 at 519.717 kb on - strand, within HMPREF1058_RS10945 at 519.717 kb on - strand, within HMPREF1058_RS10945 at 519.771 kb on + strand, within HMPREF1058_RS10945 at 519.781 kb on + strand, within HMPREF1058_RS10945 at 519.823 kb on - strand, within HMPREF1058_RS10945 at 519.826 kb on + strand, within HMPREF1058_RS10945 at 519.826 kb on + strand, within HMPREF1058_RS10945 at 519.827 kb on - strand, within HMPREF1058_RS10945 at 519.827 kb on - strand, within HMPREF1058_RS10945 at 519.827 kb on - strand, within HMPREF1058_RS10945 at 519.846 kb on + strand, within HMPREF1058_RS10945 at 519.850 kb on + strand, within HMPREF1058_RS10945 at 519.850 kb on + strand, within HMPREF1058_RS10945 at 519.850 kb on + strand, within HMPREF1058_RS10945 at 519.850 kb on + strand, within HMPREF1058_RS10945 at 519.853 kb on - strand, within HMPREF1058_RS10945 at 519.884 kb on - strand, within HMPREF1058_RS10945 at 519.884 kb on - strand at 519.912 kb on - strand, within HMPREF1058_RS10945 at 519.968 kb on - strand, within HMPREF1058_RS10945 at 519.986 kb on - strand, within HMPREF1058_RS10945 at 519.990 kb on + strand, within HMPREF1058_RS10945 at 519.990 kb on + strand, within HMPREF1058_RS10945 at 520.101 kb on + strand, within HMPREF1058_RS10945 at 520.202 kb on - strand, within HMPREF1058_RS10945 at 520.329 kb on - strand, within HMPREF1058_RS10945 at 520.331 kb on - strand, within HMPREF1058_RS10945 at 520.331 kb on - strand, within HMPREF1058_RS10945 at 520.331 kb on - strand, within HMPREF1058_RS10945 at 520.381 kb on + strand at 520.426 kb on + strand at 520.428 kb on + strand at 520.429 kb on - strand at 520.449 kb on + strand at 520.449 kb on + strand at 520.450 kb on - strand at 520.450 kb on - strand at 520.494 kb on + strand at 520.575 kb on + strand at 520.576 kb on - strand at 520.577 kb on + strand at 520.577 kb on + strand at 520.578 kb on - strand at 520.578 kb on - strand at 520.687 kb on + strand at 520.795 kb on + strand, within HMPREF1058_RS10940 at 520.809 kb on + strand, within HMPREF1058_RS10940 at 520.915 kb on + strand, within HMPREF1058_RS10940 at 520.915 kb on + strand, within HMPREF1058_RS10940 at 520.916 kb on - strand, within HMPREF1058_RS10940 at 520.941 kb on - strand, within HMPREF1058_RS10940 at 520.941 kb on - strand, within HMPREF1058_RS10940 at 520.958 kb on + strand, within HMPREF1058_RS10940 at 520.962 kb on + strand, within HMPREF1058_RS10940 at 520.963 kb on - strand, within HMPREF1058_RS10940 at 521.009 kb on + strand, within HMPREF1058_RS10940 at 521.009 kb on + strand, within HMPREF1058_RS10940 at 521.056 kb on + strand, within HMPREF1058_RS10940 at 521.057 kb on - strand, within HMPREF1058_RS10940 at 521.057 kb on - strand, within HMPREF1058_RS10940 at 521.061 kb on + strand, within HMPREF1058_RS10940 at 521.061 kb on + strand, within HMPREF1058_RS10940 at 521.208 kb on + strand, within HMPREF1058_RS10940 at 521.208 kb on + strand, within HMPREF1058_RS10940 at 521.216 kb on + strand, within HMPREF1058_RS10940 at 521.216 kb on + strand, within HMPREF1058_RS10940 at 521.216 kb on + strand, within HMPREF1058_RS10940 at 521.230 kb on + strand, within HMPREF1058_RS10940 at 521.277 kb on + strand, within HMPREF1058_RS10940 at 521.281 kb on + strand, within HMPREF1058_RS10940 at 521.282 kb on - strand, within HMPREF1058_RS10940 at 521.282 kb on - strand, within HMPREF1058_RS10940 at 521.282 kb on - strand, within HMPREF1058_RS10940 at 521.282 kb on - strand, within HMPREF1058_RS10940 at 521.282 kb on - strand, within HMPREF1058_RS10940 at 521.310 kb on + strand, within HMPREF1058_RS10940 at 521.310 kb on + strand, within HMPREF1058_RS10940 at 521.334 kb on - strand, within HMPREF1058_RS10940 at 521.390 kb on + strand, within HMPREF1058_RS10940 at 521.390 kb on + strand, within HMPREF1058_RS10940 at 521.391 kb on - strand, within HMPREF1058_RS10940 at 521.410 kb on + strand, within HMPREF1058_RS10940 at 521.431 kb on + strand, within HMPREF1058_RS10940 at 521.550 kb on + strand, within HMPREF1058_RS10940 at 521.551 kb on - strand, within HMPREF1058_RS10940 at 521.551 kb on - strand, within HMPREF1058_RS10940 at 521.557 kb on + strand, within HMPREF1058_RS10940 at 521.557 kb on + strand, within HMPREF1058_RS10940 at 521.581 kb on - strand, within HMPREF1058_RS10940 at 521.587 kb on + strand, within HMPREF1058_RS10940 at 521.587 kb on + strand, within HMPREF1058_RS10940 at 521.587 kb on + strand, within HMPREF1058_RS10940 at 521.588 kb on - strand, within HMPREF1058_RS10940 at 521.588 kb on - strand, within HMPREF1058_RS10940 at 521.691 kb on + strand, within HMPREF1058_RS10940 at 521.692 kb on - strand, within HMPREF1058_RS10940 at 521.774 kb on + strand at 521.799 kb on - strand at 521.806 kb on - strand at 521.819 kb on - strand at 521.820 kb on + strand at 521.884 kb on + strand at 521.895 kb on - strand at 521.910 kb on - strand at 521.910 kb on - strand at 521.947 kb on - strand at 521.961 kb on + strand at 521.971 kb on + strand at 521.988 kb on - strand at 521.999 kb on - strand at 522.001 kb on - strand at 522.088 kb on + strand at 522.168 kb on + strand at 522.227 kb on - strand at 522.335 kb on + strand, within HMPREF1058_RS10935 at 522.336 kb on - strand, within HMPREF1058_RS10935 at 522.453 kb on + strand, within HMPREF1058_RS10935 at 522.657 kb on + strand, within HMPREF1058_RS10935 at 522.667 kb on + strand, within HMPREF1058_RS10935 at 522.668 kb on - strand, within HMPREF1058_RS10935 at 522.668 kb on - strand, within HMPREF1058_RS10935 at 522.671 kb on + strand, within HMPREF1058_RS10935 at 522.671 kb on + strand, within HMPREF1058_RS10935 at 522.671 kb on + strand, within HMPREF1058_RS10935 at 522.672 kb on - strand, within HMPREF1058_RS10935 at 522.672 kb on - strand, within HMPREF1058_RS10935 at 522.672 kb on - strand, within HMPREF1058_RS10935 at 522.672 kb on - strand, within HMPREF1058_RS10935 at 522.770 kb on - strand, within HMPREF1058_RS10935 at 522.780 kb on + strand, within HMPREF1058_RS10935 at 522.781 kb on - strand, within HMPREF1058_RS10935 at 522.781 kb on - strand, within HMPREF1058_RS10935 at 522.781 kb on - strand, within HMPREF1058_RS10935 at 522.782 kb on + strand, within HMPREF1058_RS10935 at 522.783 kb on - strand, within HMPREF1058_RS10935 at 522.785 kb on + strand, within HMPREF1058_RS10935 at 522.808 kb on - strand, within HMPREF1058_RS10935 at 522.811 kb on + strand, within HMPREF1058_RS10935 at 522.811 kb on + strand, within HMPREF1058_RS10935 at 522.812 kb on - strand, within HMPREF1058_RS10935 at 522.812 kb on - strand, within HMPREF1058_RS10935 at 522.812 kb on - strand, within HMPREF1058_RS10935
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source remove 519,661 + HMPREF1058_RS10945 0.21 +0.0 519,713 - HMPREF1058_RS10945 0.26 +0.9 519,713 - HMPREF1058_RS10945 0.26 +0.7 519,713 - HMPREF1058_RS10945 0.26 +0.5 519,715 - HMPREF1058_RS10945 0.26 +0.6 519,716 + HMPREF1058_RS10945 0.26 +0.9 519,716 + HMPREF1058_RS10945 0.26 +1.4 519,717 - HMPREF1058_RS10945 0.27 +0.9 519,717 - HMPREF1058_RS10945 0.27 +1.2 519,771 + HMPREF1058_RS10945 0.32 +1.8 519,781 + HMPREF1058_RS10945 0.33 +1.5 519,823 - HMPREF1058_RS10945 0.37 +1.3 519,826 + HMPREF1058_RS10945 0.38 +0.9 519,826 + HMPREF1058_RS10945 0.38 +1.6 519,827 - HMPREF1058_RS10945 0.38 -0.4 519,827 - HMPREF1058_RS10945 0.38 +1.0 519,827 - HMPREF1058_RS10945 0.38 +0.7 519,846 + HMPREF1058_RS10945 0.40 +1.3 519,850 + HMPREF1058_RS10945 0.40 +1.6 519,850 + HMPREF1058_RS10945 0.40 +1.0 519,850 + HMPREF1058_RS10945 0.40 +2.1 519,850 + HMPREF1058_RS10945 0.40 +1.9 519,853 - HMPREF1058_RS10945 0.40 +1.0 519,884 - HMPREF1058_RS10945 0.43 +1.0 519,884 - -1.0 519,912 - HMPREF1058_RS10945 0.46 +1.2 519,968 - HMPREF1058_RS10945 0.52 -1.3 519,986 - HMPREF1058_RS10945 0.54 +1.1 519,990 + HMPREF1058_RS10945 0.54 +1.2 519,990 + HMPREF1058_RS10945 0.54 +1.1 520,101 + HMPREF1058_RS10945 0.65 -0.9 520,202 - HMPREF1058_RS10945 0.76 +1.1 520,329 - HMPREF1058_RS10945 0.88 +0.8 520,331 - HMPREF1058_RS10945 0.89 +0.8 520,331 - HMPREF1058_RS10945 0.89 +3.2 520,331 - HMPREF1058_RS10945 0.89 +0.7 520,381 + +1.8 520,426 + +1.4 520,428 + +0.5 520,429 - +1.8 520,449 + +1.3 520,449 + +1.1 520,450 - -0.7 520,450 - -0.8 520,494 + +2.2 520,575 + +0.3 520,576 - -0.5 520,577 + +0.1 520,577 + +0.7 520,578 - -1.6 520,578 - -1.3 520,687 + -3.2 520,795 + HMPREF1058_RS10940 0.16 -2.4 520,809 + HMPREF1058_RS10940 0.17 -3.1 520,915 + HMPREF1058_RS10940 0.25 -1.9 520,915 + HMPREF1058_RS10940 0.25 -1.5 520,916 - HMPREF1058_RS10940 0.25 -1.3 520,941 - HMPREF1058_RS10940 0.27 -1.2 520,941 - HMPREF1058_RS10940 0.27 -0.7 520,958 + HMPREF1058_RS10940 0.29 -1.3 520,962 + HMPREF1058_RS10940 0.29 -2.1 520,963 - HMPREF1058_RS10940 0.29 -1.1 521,009 + HMPREF1058_RS10940 0.33 -1.0 521,009 + HMPREF1058_RS10940 0.33 -1.8 521,056 + HMPREF1058_RS10940 0.37 -1.7 521,057 - HMPREF1058_RS10940 0.37 -1.5 521,057 - HMPREF1058_RS10940 0.37 -2.4 521,061 + HMPREF1058_RS10940 0.37 -2.4 521,061 + HMPREF1058_RS10940 0.37 -1.4 521,208 + HMPREF1058_RS10940 0.49 -2.3 521,208 + HMPREF1058_RS10940 0.49 -0.7 521,216 + HMPREF1058_RS10940 0.49 -1.5 521,216 + HMPREF1058_RS10940 0.49 -3.4 521,216 + HMPREF1058_RS10940 0.49 +0.4 521,230 + HMPREF1058_RS10940 0.50 -2.6 521,277 + HMPREF1058_RS10940 0.54 -2.4 521,281 + HMPREF1058_RS10940 0.54 -2.5 521,282 - HMPREF1058_RS10940 0.54 -0.6 521,282 - HMPREF1058_RS10940 0.54 -1.9 521,282 - HMPREF1058_RS10940 0.54 -0.8 521,282 - HMPREF1058_RS10940 0.54 -2.8 521,282 - HMPREF1058_RS10940 0.54 -0.7 521,310 + HMPREF1058_RS10940 0.57 -2.2 521,310 + HMPREF1058_RS10940 0.57 -2.7 521,334 - HMPREF1058_RS10940 0.59 -1.7 521,390 + HMPREF1058_RS10940 0.63 -3.8 521,390 + HMPREF1058_RS10940 0.63 -1.3 521,391 - HMPREF1058_RS10940 0.63 -0.8 521,410 + HMPREF1058_RS10940 0.65 -2.2 521,431 + HMPREF1058_RS10940 0.66 -2.2 521,550 + HMPREF1058_RS10940 0.76 -1.5 521,551 - HMPREF1058_RS10940 0.76 +0.0 521,551 - HMPREF1058_RS10940 0.76 -1.2 521,557 + HMPREF1058_RS10940 0.76 -2.2 521,557 + HMPREF1058_RS10940 0.76 -0.8 521,581 - HMPREF1058_RS10940 0.78 -1.8 521,587 + HMPREF1058_RS10940 0.79 -2.0 521,587 + HMPREF1058_RS10940 0.79 -1.8 521,587 + HMPREF1058_RS10940 0.79 -2.6 521,588 - HMPREF1058_RS10940 0.79 -2.3 521,588 - HMPREF1058_RS10940 0.79 -2.4 521,691 + HMPREF1058_RS10940 0.87 -2.9 521,692 - HMPREF1058_RS10940 0.87 -1.0 521,774 + -4.7 521,799 - +0.7 521,806 - -1.5 521,819 - +0.4 521,820 + -1.3 521,884 + -0.8 521,895 - -3.0 521,910 - +0.5 521,910 - +0.2 521,947 - -1.7 521,961 + +0.3 521,971 + -0.1 521,988 - +0.2 521,999 - -0.6 522,001 - -0.5 522,088 + -0.5 522,168 + -0.2 522,227 - +0.6 522,335 + HMPREF1058_RS10935 0.12 +0.6 522,336 - HMPREF1058_RS10935 0.12 -1.7 522,453 + HMPREF1058_RS10935 0.20 -3.0 522,657 + HMPREF1058_RS10935 0.33 +0.6 522,667 + HMPREF1058_RS10935 0.34 +0.0 522,668 - HMPREF1058_RS10935 0.34 +1.0 522,668 - HMPREF1058_RS10935 0.34 +0.5 522,671 + HMPREF1058_RS10935 0.34 -0.4 522,671 + HMPREF1058_RS10935 0.34 -1.2 522,671 + HMPREF1058_RS10935 0.34 +0.4 522,672 - HMPREF1058_RS10935 0.34 +0.2 522,672 - HMPREF1058_RS10935 0.34 -0.1 522,672 - HMPREF1058_RS10935 0.34 +0.1 522,672 - HMPREF1058_RS10935 0.34 -1.7 522,770 - HMPREF1058_RS10935 0.40 +0.1 522,780 + HMPREF1058_RS10935 0.41 -2.4 522,781 - HMPREF1058_RS10935 0.41 -1.1 522,781 - HMPREF1058_RS10935 0.41 +0.7 522,781 - HMPREF1058_RS10935 0.41 -2.4 522,782 + HMPREF1058_RS10935 0.41 -0.4 522,783 - HMPREF1058_RS10935 0.41 +0.7 522,785 + HMPREF1058_RS10935 0.41 +1.1 522,808 - HMPREF1058_RS10935 0.43 -0.4 522,811 + HMPREF1058_RS10935 0.43 +0.7 522,811 + HMPREF1058_RS10935 0.43 +0.1 522,812 - HMPREF1058_RS10935 0.43 +0.6 522,812 - HMPREF1058_RS10935 0.43 -0.1 522,812 - HMPREF1058_RS10935 0.43 -0.2
Or see this region's nucleotide sequence