Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10270 and HMPREF1058_RS10265 overlap by 4 nucleotides HMPREF1058_RS10265 and HMPREF1058_RS10260 are separated by 2 nucleotides HMPREF1058_RS10260 and HMPREF1058_RS10255 are separated by 1 nucleotides HMPREF1058_RS10255 and HMPREF1058_RS10250 are separated by 324 nucleotides HMPREF1058_RS10250 and HMPREF1058_RS10245 are separated by 75 nucleotides
HMPREF1058_RS10270: HMPREF1058_RS10270 - hypothetical protein, at 697,425 to 697,676
_RS10270
HMPREF1058_RS10265: HMPREF1058_RS10265 - hypothetical protein, at 697,673 to 697,891
_RS10265
HMPREF1058_RS10260: HMPREF1058_RS10260 - ADP-ribosylglycohydrolase family protein, at 697,894 to 698,658
_RS10260
HMPREF1058_RS10255: HMPREF1058_RS10255 - hypothetical protein, at 698,660 to 698,980
_RS10255
HMPREF1058_RS10250: HMPREF1058_RS10250 - hypothetical protein, at 699,305 to 699,862
_RS10250
HMPREF1058_RS10245: HMPREF1058_RS10245 - hypothetical protein, at 699,938 to 702,400
_RS10245
Position (kb) 698
699 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 697.724 kb on + strand, within HMPREF1058_RS10265 at 697.785 kb on + strand, within HMPREF1058_RS10265 at 697.898 kb on + strand at 697.910 kb on + strand at 697.911 kb on - strand at 697.923 kb on - strand at 698.001 kb on + strand, within HMPREF1058_RS10260 at 698.002 kb on - strand, within HMPREF1058_RS10260 at 698.139 kb on + strand, within HMPREF1058_RS10260 at 698.153 kb on - strand, within HMPREF1058_RS10260 at 698.154 kb on + strand, within HMPREF1058_RS10260 at 698.157 kb on + strand, within HMPREF1058_RS10260 at 698.221 kb on - strand, within HMPREF1058_RS10260 at 698.279 kb on + strand, within HMPREF1058_RS10260 at 698.365 kb on + strand, within HMPREF1058_RS10260 at 698.365 kb on + strand, within HMPREF1058_RS10260 at 698.373 kb on + strand, within HMPREF1058_RS10260 at 698.373 kb on + strand, within HMPREF1058_RS10260 at 698.374 kb on - strand, within HMPREF1058_RS10260 at 698.374 kb on - strand, within HMPREF1058_RS10260 at 698.374 kb on - strand, within HMPREF1058_RS10260 at 698.395 kb on + strand, within HMPREF1058_RS10260 at 698.436 kb on + strand, within HMPREF1058_RS10260 at 698.451 kb on + strand, within HMPREF1058_RS10260 at 698.451 kb on + strand, within HMPREF1058_RS10260 at 698.517 kb on + strand, within HMPREF1058_RS10260 at 698.529 kb on + strand, within HMPREF1058_RS10260 at 698.530 kb on - strand, within HMPREF1058_RS10260 at 698.541 kb on + strand, within HMPREF1058_RS10260 at 698.541 kb on + strand, within HMPREF1058_RS10260 at 698.542 kb on - strand, within HMPREF1058_RS10260 at 698.553 kb on + strand, within HMPREF1058_RS10260 at 698.611 kb on - strand at 698.624 kb on + strand at 698.635 kb on + strand at 698.641 kb on - strand at 698.652 kb on + strand at 698.652 kb on + strand at 698.656 kb on + strand at 698.656 kb on + strand at 698.669 kb on - strand at 698.764 kb on + strand, within HMPREF1058_RS10255 at 698.822 kb on + strand, within HMPREF1058_RS10255 at 698.864 kb on + strand, within HMPREF1058_RS10255 at 698.864 kb on + strand, within HMPREF1058_RS10255 at 698.865 kb on - strand, within HMPREF1058_RS10255 at 698.890 kb on - strand, within HMPREF1058_RS10255 at 698.978 kb on + strand at 698.978 kb on + strand at 698.979 kb on - strand at 699.015 kb on + strand at 699.041 kb on - strand at 699.044 kb on + strand at 699.045 kb on - strand at 699.052 kb on + strand at 699.053 kb on - strand at 699.084 kb on - strand at 699.085 kb on + strand at 699.086 kb on - strand at 699.155 kb on + strand at 699.259 kb on - strand at 699.282 kb on + strand at 699.293 kb on - strand at 699.305 kb on - strand at 699.316 kb on - strand at 699.371 kb on + strand, within HMPREF1058_RS10250 at 699.372 kb on + strand, within HMPREF1058_RS10250 at 699.372 kb on - strand, within HMPREF1058_RS10250 at 699.396 kb on + strand, within HMPREF1058_RS10250 at 699.435 kb on - strand, within HMPREF1058_RS10250 at 699.451 kb on + strand, within HMPREF1058_RS10250 at 699.452 kb on - strand, within HMPREF1058_RS10250 at 699.454 kb on + strand, within HMPREF1058_RS10250 at 699.455 kb on - strand, within HMPREF1058_RS10250 at 699.455 kb on - strand, within HMPREF1058_RS10250 at 699.514 kb on + strand, within HMPREF1058_RS10250 at 699.514 kb on + strand, within HMPREF1058_RS10250 at 699.515 kb on - strand, within HMPREF1058_RS10250 at 699.517 kb on + strand, within HMPREF1058_RS10250 at 699.517 kb on + strand, within HMPREF1058_RS10250 at 699.566 kb on - strand, within HMPREF1058_RS10250 at 699.566 kb on - strand, within HMPREF1058_RS10250 at 699.567 kb on + strand, within HMPREF1058_RS10250 at 699.567 kb on + strand, within HMPREF1058_RS10250 at 699.568 kb on - strand, within HMPREF1058_RS10250 at 699.568 kb on - strand, within HMPREF1058_RS10250 at 699.569 kb on + strand, within HMPREF1058_RS10250 at 699.570 kb on - strand, within HMPREF1058_RS10250 at 699.570 kb on - strand, within HMPREF1058_RS10250 at 699.570 kb on - strand, within HMPREF1058_RS10250 at 699.570 kb on - strand, within HMPREF1058_RS10250 at 699.571 kb on + strand, within HMPREF1058_RS10250 at 699.582 kb on + strand, within HMPREF1058_RS10250 at 699.631 kb on - strand, within HMPREF1058_RS10250 at 699.662 kb on - strand, within HMPREF1058_RS10250 at 699.669 kb on + strand, within HMPREF1058_RS10250 at 699.682 kb on - strand, within HMPREF1058_RS10250 at 699.689 kb on + strand, within HMPREF1058_RS10250 at 699.690 kb on - strand, within HMPREF1058_RS10250 at 699.722 kb on + strand, within HMPREF1058_RS10250 at 699.746 kb on + strand, within HMPREF1058_RS10250 at 699.779 kb on + strand, within HMPREF1058_RS10250 at 699.780 kb on - strand, within HMPREF1058_RS10250 at 699.781 kb on + strand, within HMPREF1058_RS10250 at 699.795 kb on + strand, within HMPREF1058_RS10250 at 699.805 kb on + strand, within HMPREF1058_RS10250 at 699.807 kb on + strand at 699.818 kb on + strand at 699.865 kb on + strand at 699.882 kb on + strand at 699.939 kb on + strand at 699.939 kb on + strand at 699.939 kb on + strand at 699.940 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source remove 697,724 + HMPREF1058_RS10265 0.23 +1.5 697,785 + HMPREF1058_RS10265 0.51 -2.0 697,898 + +0.1 697,910 + +0.2 697,911 - -1.7 697,923 - -2.6 698,001 + HMPREF1058_RS10260 0.14 +0.6 698,002 - HMPREF1058_RS10260 0.14 -1.7 698,139 + HMPREF1058_RS10260 0.32 +0.9 698,153 - HMPREF1058_RS10260 0.34 -1.2 698,154 + HMPREF1058_RS10260 0.34 +0.3 698,157 + HMPREF1058_RS10260 0.34 +0.7 698,221 - HMPREF1058_RS10260 0.43 -2.7 698,279 + HMPREF1058_RS10260 0.50 +0.2 698,365 + HMPREF1058_RS10260 0.62 +1.1 698,365 + HMPREF1058_RS10260 0.62 -0.7 698,373 + HMPREF1058_RS10260 0.63 -0.4 698,373 + HMPREF1058_RS10260 0.63 +0.2 698,374 - HMPREF1058_RS10260 0.63 -2.5 698,374 - HMPREF1058_RS10260 0.63 -1.4 698,374 - HMPREF1058_RS10260 0.63 -1.5 698,395 + HMPREF1058_RS10260 0.65 -0.0 698,436 + HMPREF1058_RS10260 0.71 +0.1 698,451 + HMPREF1058_RS10260 0.73 +0.9 698,451 + HMPREF1058_RS10260 0.73 -1.4 698,517 + HMPREF1058_RS10260 0.81 +0.3 698,529 + HMPREF1058_RS10260 0.83 +0.2 698,530 - HMPREF1058_RS10260 0.83 -1.0 698,541 + HMPREF1058_RS10260 0.85 +1.2 698,541 + HMPREF1058_RS10260 0.85 -0.3 698,542 - HMPREF1058_RS10260 0.85 -1.3 698,553 + HMPREF1058_RS10260 0.86 +0.1 698,611 - -2.0 698,624 + +0.4 698,635 + +0.8 698,641 - -1.8 698,652 + -0.8 698,652 + -0.6 698,656 + -0.5 698,656 + -1.9 698,669 - -1.8 698,764 + HMPREF1058_RS10255 0.32 -1.8 698,822 + HMPREF1058_RS10255 0.50 -0.6 698,864 + HMPREF1058_RS10255 0.64 -1.2 698,864 + HMPREF1058_RS10255 0.64 -1.5 698,865 - HMPREF1058_RS10255 0.64 -2.9 698,890 - HMPREF1058_RS10255 0.72 +1.0 698,978 + +0.3 698,978 + +1.1 698,979 - +1.8 699,015 + -0.5 699,041 - +0.5 699,044 + -0.1 699,045 - +0.0 699,052 + -1.0 699,053 - -0.8 699,084 - +0.9 699,085 + -0.5 699,086 - -0.2 699,155 + -0.1 699,259 - -1.3 699,282 + +0.8 699,293 - -1.8 699,305 - +0.9 699,316 - -0.0 699,371 + HMPREF1058_RS10250 0.12 +2.0 699,372 + HMPREF1058_RS10250 0.12 -0.6 699,372 - HMPREF1058_RS10250 0.12 +1.5 699,396 + HMPREF1058_RS10250 0.16 -0.8 699,435 - HMPREF1058_RS10250 0.23 -0.2 699,451 + HMPREF1058_RS10250 0.26 +0.8 699,452 - HMPREF1058_RS10250 0.26 +0.4 699,454 + HMPREF1058_RS10250 0.27 +0.1 699,455 - HMPREF1058_RS10250 0.27 -0.1 699,455 - HMPREF1058_RS10250 0.27 +0.5 699,514 + HMPREF1058_RS10250 0.37 +0.7 699,514 + HMPREF1058_RS10250 0.37 +0.2 699,515 - HMPREF1058_RS10250 0.38 +0.5 699,517 + HMPREF1058_RS10250 0.38 +0.7 699,517 + HMPREF1058_RS10250 0.38 +0.1 699,566 - HMPREF1058_RS10250 0.47 +0.0 699,566 - HMPREF1058_RS10250 0.47 +1.2 699,567 + HMPREF1058_RS10250 0.47 +0.6 699,567 + HMPREF1058_RS10250 0.47 -0.1 699,568 - HMPREF1058_RS10250 0.47 +0.6 699,568 - HMPREF1058_RS10250 0.47 +0.4 699,569 + HMPREF1058_RS10250 0.47 -0.3 699,570 - HMPREF1058_RS10250 0.47 -1.2 699,570 - HMPREF1058_RS10250 0.47 -0.5 699,570 - HMPREF1058_RS10250 0.47 +1.1 699,570 - HMPREF1058_RS10250 0.47 +0.9 699,571 + HMPREF1058_RS10250 0.48 -0.0 699,582 + HMPREF1058_RS10250 0.50 +0.9 699,631 - HMPREF1058_RS10250 0.58 -0.0 699,662 - HMPREF1058_RS10250 0.64 +0.1 699,669 + HMPREF1058_RS10250 0.65 +1.0 699,682 - HMPREF1058_RS10250 0.68 +0.5 699,689 + HMPREF1058_RS10250 0.69 -0.2 699,690 - HMPREF1058_RS10250 0.69 -0.4 699,722 + HMPREF1058_RS10250 0.75 -1.0 699,746 + HMPREF1058_RS10250 0.79 +0.4 699,779 + HMPREF1058_RS10250 0.85 -0.7 699,780 - HMPREF1058_RS10250 0.85 -2.1 699,781 + HMPREF1058_RS10250 0.85 -0.8 699,795 + HMPREF1058_RS10250 0.88 +0.2 699,805 + HMPREF1058_RS10250 0.90 -0.3 699,807 + -0.2 699,818 + -0.1 699,865 + -0.2 699,882 + -1.7 699,939 + -0.9 699,939 + +0.1 699,939 + +0.0 699,940 - +0.0
Or see this region's nucleotide sequence