Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09455 and HMPREF1058_RS09450 are separated by 168 nucleotides HMPREF1058_RS09450 and HMPREF1058_RS09445 are separated by 77 nucleotides HMPREF1058_RS09445 and HMPREF1058_RS09440 are separated by 14 nucleotides HMPREF1058_RS09440 and HMPREF1058_RS09435 are separated by 98 nucleotides HMPREF1058_RS09435 and HMPREF1058_RS09430 are separated by 43 nucleotides HMPREF1058_RS09430 and HMPREF1058_RS09425 are separated by 33 nucleotides HMPREF1058_RS09425 and HMPREF1058_RS09420 are separated by 12 nucleotides HMPREF1058_RS09420 and HMPREF1058_RS09415 are separated by 51 nucleotides
HMPREF1058_RS09455: HMPREF1058_RS09455 - aminopeptidase P family protein, at 879,749 to 881,530
_RS09455
HMPREF1058_RS09450: HMPREF1058_RS09450 - 30S ribosomal protein S21, at 881,699 to 881,890
_RS09450
HMPREF1058_RS09445: HMPREF1058_RS09445 - tyrosine-type recombinase/integrase, at 881,968 to 882,849
_RS09445
HMPREF1058_RS09440: HMPREF1058_RS09440 - ribosome-associated translation inhibitor RaiA, at 882,864 to 883,163
_RS09440
HMPREF1058_RS09435: HMPREF1058_RS09435 - tRNA-Thr, at 883,262 to 883,335
_RS09435
HMPREF1058_RS09430: HMPREF1058_RS09430 - tRNA-Tyr, at 883,379 to 883,461
_RS09430
HMPREF1058_RS09425: HMPREF1058_RS09425 - tRNA-Gly, at 883,495 to 883,567
_RS09425
HMPREF1058_RS09420: HMPREF1058_RS09420 - tRNA-Thr, at 883,580 to 883,651
_RS09420
HMPREF1058_RS09415: HMPREF1058_RS09415 - elongation factor Tu, at 883,703 to 884,887
_RS09415
Position (kb) 881
882
883 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 881.045 kb on + strand, within HMPREF1058_RS09455 at 881.046 kb on - strand, within HMPREF1058_RS09455 at 881.088 kb on - strand, within HMPREF1058_RS09455 at 881.118 kb on - strand, within HMPREF1058_RS09455 at 881.216 kb on + strand, within HMPREF1058_RS09455 at 881.276 kb on - strand, within HMPREF1058_RS09455 at 881.279 kb on - strand, within HMPREF1058_RS09455 at 881.292 kb on - strand, within HMPREF1058_RS09455 at 881.365 kb on + strand at 881.424 kb on + strand at 881.424 kb on + strand at 881.425 kb on - strand at 881.425 kb on - strand at 881.425 kb on - strand at 881.500 kb on + strand at 881.505 kb on - strand at 881.509 kb on + strand at 881.516 kb on - strand at 881.542 kb on + strand at 881.543 kb on - strand at 881.554 kb on + strand at 881.580 kb on - strand at 881.597 kb on + strand at 881.628 kb on + strand at 881.672 kb on + strand at 882.029 kb on + strand at 882.033 kb on + strand at 882.388 kb on + strand, within HMPREF1058_RS09445 at 882.388 kb on + strand, within HMPREF1058_RS09445 at 882.859 kb on + strand at 882.863 kb on + strand at 882.951 kb on + strand, within HMPREF1058_RS09440 at 882.964 kb on + strand, within HMPREF1058_RS09440 at 882.964 kb on + strand, within HMPREF1058_RS09440 at 883.079 kb on + strand, within HMPREF1058_RS09440 at 883.080 kb on - strand, within HMPREF1058_RS09440 at 883.102 kb on + strand, within HMPREF1058_RS09440 at 883.103 kb on - strand, within HMPREF1058_RS09440
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source remove 881,045 + HMPREF1058_RS09455 0.73 +2.0 881,046 - HMPREF1058_RS09455 0.73 +0.4 881,088 - HMPREF1058_RS09455 0.75 +0.7 881,118 - HMPREF1058_RS09455 0.77 -0.0 881,216 + HMPREF1058_RS09455 0.82 -0.0 881,276 - HMPREF1058_RS09455 0.86 -1.9 881,279 - HMPREF1058_RS09455 0.86 -0.1 881,292 - HMPREF1058_RS09455 0.87 -2.0 881,365 + +1.0 881,424 + -1.1 881,424 + +2.9 881,425 - +0.7 881,425 - +0.4 881,425 - +0.4 881,500 + +1.2 881,505 - +0.4 881,509 + +0.3 881,516 - -0.7 881,542 + +1.0 881,543 - -0.1 881,554 + +1.6 881,580 - -0.5 881,597 + -0.5 881,628 + -0.2 881,672 + -1.5 882,029 + +0.3 882,033 + -0.8 882,388 + HMPREF1058_RS09445 0.48 -1.5 882,388 + HMPREF1058_RS09445 0.48 -2.8 882,859 + -1.4 882,863 + -2.0 882,951 + HMPREF1058_RS09440 0.29 +0.6 882,964 + HMPREF1058_RS09440 0.33 +0.0 882,964 + HMPREF1058_RS09440 0.33 -0.7 883,079 + HMPREF1058_RS09440 0.72 +0.1 883,080 - HMPREF1058_RS09440 0.72 -0.8 883,102 + HMPREF1058_RS09440 0.79 +0.6 883,103 - HMPREF1058_RS09440 0.80 +1.2
Or see this region's nucleotide sequence