Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09245 and HMPREF1058_RS09240 are separated by 10 nucleotides HMPREF1058_RS09240 and HMPREF1058_RS09235 are separated by 1 nucleotides HMPREF1058_RS09235 and HMPREF1058_RS20770 are separated by 14 nucleotides HMPREF1058_RS20770 and HMPREF1058_RS09230 are separated by 33 nucleotides HMPREF1058_RS09230 and HMPREF1058_RS09225 are separated by 11 nucleotides
HMPREF1058_RS09245: HMPREF1058_RS09245 - preprotein translocase subunit SecY, at 909,486 to 910,832
_RS09245
HMPREF1058_RS09240: HMPREF1058_RS09240 - type I methionyl aminopeptidase, at 910,843 to 911,640
_RS09240
HMPREF1058_RS09235: HMPREF1058_RS09235 - translation initiation factor IF-1, at 911,642 to 911,860
_RS09235
HMPREF1058_RS20770: HMPREF1058_RS20770 - 50S ribosomal protein L36, at 911,875 to 911,991
_RS20770
HMPREF1058_RS09230: HMPREF1058_RS09230 - 30S ribosomal protein S13, at 912,025 to 912,405
_RS09230
HMPREF1058_RS09225: HMPREF1058_RS09225 - 30S ribosomal protein S11, at 912,417 to 912,806
_RS09225
Position (kb) 910
911
912 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 910.871 kb on + strand at 910.895 kb on + strand at 910.895 kb on + strand at 910.895 kb on + strand at 910.926 kb on + strand, within HMPREF1058_RS09240 at 910.983 kb on + strand, within HMPREF1058_RS09240 at 910.983 kb on + strand, within HMPREF1058_RS09240 at 910.992 kb on + strand, within HMPREF1058_RS09240 at 911.061 kb on + strand, within HMPREF1058_RS09240 at 911.084 kb on + strand, within HMPREF1058_RS09240 at 911.149 kb on + strand, within HMPREF1058_RS09240 at 911.246 kb on + strand, within HMPREF1058_RS09240 at 911.248 kb on + strand, within HMPREF1058_RS09240 at 911.252 kb on + strand, within HMPREF1058_RS09240 at 911.252 kb on + strand, within HMPREF1058_RS09240 at 911.294 kb on + strand, within HMPREF1058_RS09240 at 911.294 kb on + strand, within HMPREF1058_RS09240 at 911.294 kb on + strand, within HMPREF1058_RS09240 at 911.294 kb on + strand, within HMPREF1058_RS09240 at 911.376 kb on + strand, within HMPREF1058_RS09240 at 911.376 kb on + strand, within HMPREF1058_RS09240 at 911.376 kb on + strand, within HMPREF1058_RS09240 at 911.489 kb on + strand, within HMPREF1058_RS09240 at 911.489 kb on + strand, within HMPREF1058_RS09240 at 911.492 kb on + strand, within HMPREF1058_RS09240 at 911.520 kb on + strand, within HMPREF1058_RS09240 at 911.586 kb on + strand at 911.605 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source remove 910,871 + -0.8 910,895 + -1.0 910,895 + -1.5 910,895 + -1.0 910,926 + HMPREF1058_RS09240 0.10 -1.6 910,983 + HMPREF1058_RS09240 0.18 -2.8 910,983 + HMPREF1058_RS09240 0.18 -2.1 910,992 + HMPREF1058_RS09240 0.19 -1.8 911,061 + HMPREF1058_RS09240 0.27 -1.8 911,084 + HMPREF1058_RS09240 0.30 -2.0 911,149 + HMPREF1058_RS09240 0.38 -3.4 911,246 + HMPREF1058_RS09240 0.51 -1.4 911,248 + HMPREF1058_RS09240 0.51 -0.8 911,252 + HMPREF1058_RS09240 0.51 -3.8 911,252 + HMPREF1058_RS09240 0.51 -0.1 911,294 + HMPREF1058_RS09240 0.57 -0.5 911,294 + HMPREF1058_RS09240 0.57 -2.0 911,294 + HMPREF1058_RS09240 0.57 -1.6 911,294 + HMPREF1058_RS09240 0.57 -3.1 911,376 + HMPREF1058_RS09240 0.67 -1.5 911,376 + HMPREF1058_RS09240 0.67 -3.0 911,376 + HMPREF1058_RS09240 0.67 -2.5 911,489 + HMPREF1058_RS09240 0.81 -2.4 911,489 + HMPREF1058_RS09240 0.81 -3.4 911,492 + HMPREF1058_RS09240 0.81 -3.5 911,520 + HMPREF1058_RS09240 0.85 +0.5 911,586 + -1.7 911,605 + -2.0
Or see this region's nucleotide sequence