Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07625

Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07635 and HMPREF1058_RS07630 are separated by 69 nucleotidesHMPREF1058_RS07630 and HMPREF1058_RS07625 are separated by 154 nucleotidesHMPREF1058_RS07625 and HMPREF1058_RS07620 are separated by 160 nucleotides HMPREF1058_RS07635: HMPREF1058_RS07635 - 50S ribosomal protein L9, at 171,431 to 171,874 _RS07635 HMPREF1058_RS07630: HMPREF1058_RS07630 - hypothetical protein, at 171,944 to 172,636 _RS07630 HMPREF1058_RS07625: HMPREF1058_RS07625 - hypothetical protein, at 172,791 to 172,991 _RS07625 HMPREF1058_RS07620: HMPREF1058_RS07620 - long-chain fatty acid--CoA ligase, at 173,152 to 174,825 _RS07620 Position (kb) 172 173Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 171.806 kb on + strand, within HMPREF1058_RS07635at 171.806 kb on + strand, within HMPREF1058_RS07635at 171.807 kb on - strand, within HMPREF1058_RS07635at 171.885 kb on + strandat 171.895 kb on + strandat 171.949 kb on - strandat 171.980 kb on + strandat 172.000 kb on + strandat 172.021 kb on + strand, within HMPREF1058_RS07630at 172.056 kb on + strand, within HMPREF1058_RS07630at 172.056 kb on + strand, within HMPREF1058_RS07630at 172.056 kb on + strand, within HMPREF1058_RS07630at 172.057 kb on - strand, within HMPREF1058_RS07630at 172.147 kb on + strand, within HMPREF1058_RS07630at 172.165 kb on + strand, within HMPREF1058_RS07630at 172.165 kb on + strand, within HMPREF1058_RS07630at 172.167 kb on + strand, within HMPREF1058_RS07630at 172.167 kb on + strand, within HMPREF1058_RS07630at 172.168 kb on - strand, within HMPREF1058_RS07630at 172.168 kb on - strand, within HMPREF1058_RS07630at 172.283 kb on + strand, within HMPREF1058_RS07630at 172.349 kb on - strand, within HMPREF1058_RS07630at 172.385 kb on + strand, within HMPREF1058_RS07630at 172.415 kb on + strand, within HMPREF1058_RS07630at 172.415 kb on + strand, within HMPREF1058_RS07630at 172.441 kb on + strand, within HMPREF1058_RS07630at 172.441 kb on + strand, within HMPREF1058_RS07630at 172.489 kb on + strand, within HMPREF1058_RS07630at 172.493 kb on + strand, within HMPREF1058_RS07630at 172.546 kb on + strand, within HMPREF1058_RS07630at 172.547 kb on - strand, within HMPREF1058_RS07630at 172.547 kb on - strand, within HMPREF1058_RS07630at 172.671 kb on + strandat 172.683 kb on - strandat 172.687 kb on + strandat 172.720 kb on + strandat 172.721 kb on - strandat 172.792 kb on + strandat 172.792 kb on + strandat 172.806 kb on - strandat 172.882 kb on - strand, within HMPREF1058_RS07625at 172.965 kb on + strand, within HMPREF1058_RS07625at 173.014 kb on - strandat 173.017 kb on - strandat 173.020 kb on - strandat 173.111 kb on - strandat 173.163 kb on + strandat 173.174 kb on + strandat 173.175 kb on - strandat 173.175 kb on - strandat 173.252 kb on + strandat 173.359 kb on + strand, within HMPREF1058_RS07620at 173.362 kb on + strand, within HMPREF1058_RS07620at 173.389 kb on + strand, within HMPREF1058_RS07620at 173.389 kb on + strand, within HMPREF1058_RS07620at 173.390 kb on - strand, within HMPREF1058_RS07620at 173.396 kb on - strand, within HMPREF1058_RS07620at 173.419 kb on - strand, within HMPREF1058_RS07620at 173.421 kb on + strand, within HMPREF1058_RS07620at 173.422 kb on - strand, within HMPREF1058_RS07620at 173.422 kb on - strand, within HMPREF1058_RS07620at 173.454 kb on + strand, within HMPREF1058_RS07620at 173.466 kb on + strand, within HMPREF1058_RS07620at 173.467 kb on - strand, within HMPREF1058_RS07620at 173.501 kb on - strand, within HMPREF1058_RS07620at 173.501 kb on - strand, within HMPREF1058_RS07620at 173.502 kb on + strand, within HMPREF1058_RS07620at 173.524 kb on + strand, within HMPREF1058_RS07620at 173.525 kb on - strand, within HMPREF1058_RS07620at 173.525 kb on - strand, within HMPREF1058_RS07620at 173.529 kb on + strand, within HMPREF1058_RS07620at 173.595 kb on + strand, within HMPREF1058_RS07620at 173.595 kb on + strand, within HMPREF1058_RS07620at 173.596 kb on - strand, within HMPREF1058_RS07620at 173.597 kb on + strand, within HMPREF1058_RS07620at 173.598 kb on - strand, within HMPREF1058_RS07620at 173.598 kb on - strandat 173.598 kb on - strand, within HMPREF1058_RS07620at 173.598 kb on - strand, within HMPREF1058_RS07620at 173.627 kb on - strand, within HMPREF1058_RS07620at 173.633 kb on - strand, within HMPREF1058_RS07620at 173.649 kb on + strand, within HMPREF1058_RS07620at 173.652 kb on - strand, within HMPREF1058_RS07620at 173.713 kb on + strand, within HMPREF1058_RS07620at 173.713 kb on + strand, within HMPREF1058_RS07620at 173.715 kb on + strand, within HMPREF1058_RS07620at 173.715 kb on + strand, within HMPREF1058_RS07620at 173.736 kb on - strand, within HMPREF1058_RS07620at 173.854 kb on - strand, within HMPREF1058_RS07620at 173.900 kb on + strand, within HMPREF1058_RS07620at 173.901 kb on - strand, within HMPREF1058_RS07620at 173.914 kb on + strand, within HMPREF1058_RS07620at 173.917 kb on + strand, within HMPREF1058_RS07620at 173.918 kb on - strand, within HMPREF1058_RS07620at 173.980 kb on - strand, within HMPREF1058_RS07620at 173.980 kb on - strand, within HMPREF1058_RS07620

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
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171,806 + HMPREF1058_RS07635 0.84 -3.1
171,806 + HMPREF1058_RS07635 0.84 -3.5
171,807 - HMPREF1058_RS07635 0.85 +1.4
171,885 + -2.2
171,895 + -1.6
171,949 - -1.1
171,980 + -0.3
172,000 + -0.6
172,021 + HMPREF1058_RS07630 0.11 +0.4
172,056 + HMPREF1058_RS07630 0.16 -0.2
172,056 + HMPREF1058_RS07630 0.16 -2.1
172,056 + HMPREF1058_RS07630 0.16 -0.4
172,057 - HMPREF1058_RS07630 0.16 -0.5
172,147 + HMPREF1058_RS07630 0.29 -0.2
172,165 + HMPREF1058_RS07630 0.32 -1.3
172,165 + HMPREF1058_RS07630 0.32 -2.5
172,167 + HMPREF1058_RS07630 0.32 -3.7
172,167 + HMPREF1058_RS07630 0.32 -0.3
172,168 - HMPREF1058_RS07630 0.32 -0.9
172,168 - HMPREF1058_RS07630 0.32 -0.2
172,283 + HMPREF1058_RS07630 0.49 -0.1
172,349 - HMPREF1058_RS07630 0.58 -2.8
172,385 + HMPREF1058_RS07630 0.64 +0.6
172,415 + HMPREF1058_RS07630 0.68 -1.3
172,415 + HMPREF1058_RS07630 0.68 -1.8
172,441 + HMPREF1058_RS07630 0.72 +0.1
172,441 + HMPREF1058_RS07630 0.72 -0.9
172,489 + HMPREF1058_RS07630 0.79 -0.4
172,493 + HMPREF1058_RS07630 0.79 -3.1
172,546 + HMPREF1058_RS07630 0.87 -2.4
172,547 - HMPREF1058_RS07630 0.87 +0.8
172,547 - HMPREF1058_RS07630 0.87 +0.1
172,671 + +0.1
172,683 - -0.1
172,687 + +0.7
172,720 + -0.6
172,721 - +0.8
172,792 + -0.5
172,792 + -0.4
172,806 - -1.4
172,882 - HMPREF1058_RS07625 0.45 -2.8
172,965 + HMPREF1058_RS07625 0.87 -1.1
173,014 - -1.8
173,017 - +2.9
173,020 - -1.7
173,111 - -0.8
173,163 + -2.5
173,174 + -2.0
173,175 - -0.1
173,175 - -0.7
173,252 + -2.4
173,359 + HMPREF1058_RS07620 0.12 -0.5
173,362 + HMPREF1058_RS07620 0.13 -0.2
173,389 + HMPREF1058_RS07620 0.14 +2.4
173,389 + HMPREF1058_RS07620 0.14 +0.8
173,390 - HMPREF1058_RS07620 0.14 +0.1
173,396 - HMPREF1058_RS07620 0.15 -0.1
173,419 - HMPREF1058_RS07620 0.16 -0.3
173,421 + HMPREF1058_RS07620 0.16 +1.0
173,422 - HMPREF1058_RS07620 0.16 -1.0
173,422 - HMPREF1058_RS07620 0.16 -0.6
173,454 + HMPREF1058_RS07620 0.18 +1.4
173,466 + HMPREF1058_RS07620 0.19 -0.8
173,467 - HMPREF1058_RS07620 0.19 +0.2
173,501 - HMPREF1058_RS07620 0.21 +1.4
173,501 - HMPREF1058_RS07620 0.21 +0.5
173,502 + HMPREF1058_RS07620 0.21 -1.1
173,524 + HMPREF1058_RS07620 0.22 -0.3
173,525 - HMPREF1058_RS07620 0.22 -0.0
173,525 - HMPREF1058_RS07620 0.22 -0.4
173,529 + HMPREF1058_RS07620 0.23 -0.5
173,595 + HMPREF1058_RS07620 0.26 -1.2
173,595 + HMPREF1058_RS07620 0.26 -1.7
173,596 - HMPREF1058_RS07620 0.27 -0.0
173,597 + HMPREF1058_RS07620 0.27 -0.4
173,598 - HMPREF1058_RS07620 0.27 -0.4
173,598 - -1.1
173,598 - HMPREF1058_RS07620 0.27 -0.7
173,598 - HMPREF1058_RS07620 0.27 -1.0
173,627 - HMPREF1058_RS07620 0.28 +0.0
173,633 - HMPREF1058_RS07620 0.29 -0.3
173,649 + HMPREF1058_RS07620 0.30 -0.9
173,652 - HMPREF1058_RS07620 0.30 +1.1
173,713 + HMPREF1058_RS07620 0.34 +0.1
173,713 + HMPREF1058_RS07620 0.34 +0.2
173,715 + HMPREF1058_RS07620 0.34 -1.7
173,715 + HMPREF1058_RS07620 0.34 -1.6
173,736 - HMPREF1058_RS07620 0.35 -0.1
173,854 - HMPREF1058_RS07620 0.42 -1.8
173,900 + HMPREF1058_RS07620 0.45 -0.5
173,901 - HMPREF1058_RS07620 0.45 -1.3
173,914 + HMPREF1058_RS07620 0.46 +0.1
173,917 + HMPREF1058_RS07620 0.46 +0.6
173,918 - HMPREF1058_RS07620 0.46 -0.8
173,980 - HMPREF1058_RS07620 0.49 +0.5
173,980 - HMPREF1058_RS07620 0.49 +0.6

Or see this region's nucleotide sequence