Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07615

Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07620 and HMPREF1058_RS07615 are separated by 105 nucleotidesHMPREF1058_RS07615 and HMPREF1058_RS07610 are separated by 35 nucleotides HMPREF1058_RS07620: HMPREF1058_RS07620 - long-chain fatty acid--CoA ligase, at 173,152 to 174,825 _RS07620 HMPREF1058_RS07615: HMPREF1058_RS07615 - tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB, at 174,931 to 176,247 _RS07615 HMPREF1058_RS07610: HMPREF1058_RS07610 - glycosyltransferase family 2 protein, at 176,283 to 177,308 _RS07610 Position (kb) 174 175 176 177Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 173.980 kb on - strand, within HMPREF1058_RS07620at 173.980 kb on - strand, within HMPREF1058_RS07620at 173.995 kb on - strand, within HMPREF1058_RS07620at 173.995 kb on - strand, within HMPREF1058_RS07620at 174.004 kb on + strand, within HMPREF1058_RS07620at 174.016 kb on - strand, within HMPREF1058_RS07620at 174.016 kb on - strand, within HMPREF1058_RS07620at 174.135 kb on - strand, within HMPREF1058_RS07620at 174.164 kb on - strand, within HMPREF1058_RS07620at 174.275 kb on + strand, within HMPREF1058_RS07620at 174.276 kb on - strand, within HMPREF1058_RS07620at 174.276 kb on - strand, within HMPREF1058_RS07620at 174.313 kb on - strand, within HMPREF1058_RS07620at 174.314 kb on + strand, within HMPREF1058_RS07620at 174.321 kb on + strand, within HMPREF1058_RS07620at 174.332 kb on + strand, within HMPREF1058_RS07620at 174.333 kb on - strand, within HMPREF1058_RS07620at 174.333 kb on - strand, within HMPREF1058_RS07620at 174.460 kb on + strand, within HMPREF1058_RS07620at 174.461 kb on - strand, within HMPREF1058_RS07620at 174.571 kb on - strand, within HMPREF1058_RS07620at 174.582 kb on + strand, within HMPREF1058_RS07620at 174.594 kb on + strand, within HMPREF1058_RS07620at 174.609 kb on - strand, within HMPREF1058_RS07620at 174.631 kb on - strand, within HMPREF1058_RS07620at 174.636 kb on + strand, within HMPREF1058_RS07620at 174.641 kb on - strand, within HMPREF1058_RS07620at 174.646 kb on - strand, within HMPREF1058_RS07620at 174.650 kb on - strand, within HMPREF1058_RS07620at 174.695 kb on - strandat 174.704 kb on - strandat 174.729 kb on + strandat 174.729 kb on + strandat 174.730 kb on - strandat 174.750 kb on - strandat 174.799 kb on + strandat 174.799 kb on + strandat 174.799 kb on + strandat 174.808 kb on - strandat 174.842 kb on + strandat 174.862 kb on - strandat 174.885 kb on + strandat 174.894 kb on + strandat 175.041 kb on + strandat 175.043 kb on + strandat 175.086 kb on + strand, within HMPREF1058_RS07615at 175.089 kb on + strand, within HMPREF1058_RS07615at 175.172 kb on + strand, within HMPREF1058_RS07615at 175.189 kb on + strand, within HMPREF1058_RS07615at 175.341 kb on + strand, within HMPREF1058_RS07615at 175.670 kb on + strand, within HMPREF1058_RS07615at 175.675 kb on + strand, within HMPREF1058_RS07615at 175.675 kb on + strand, within HMPREF1058_RS07615at 175.675 kb on + strand, within HMPREF1058_RS07615at 175.841 kb on + strand, within HMPREF1058_RS07615at 175.841 kb on + strand, within HMPREF1058_RS07615at 175.896 kb on + strand, within HMPREF1058_RS07615at 175.975 kb on + strand, within HMPREF1058_RS07615at 175.975 kb on + strand, within HMPREF1058_RS07615at 175.975 kb on + strand, within HMPREF1058_RS07615at 176.066 kb on + strand, within HMPREF1058_RS07615at 176.115 kb on + strand, within HMPREF1058_RS07615at 176.257 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
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173,980 - HMPREF1058_RS07620 0.49 +0.5
173,980 - HMPREF1058_RS07620 0.49 +0.6
173,995 - HMPREF1058_RS07620 0.50 -0.9
173,995 - HMPREF1058_RS07620 0.50 -1.6
174,004 + HMPREF1058_RS07620 0.51 +0.0
174,016 - HMPREF1058_RS07620 0.52 +0.3
174,016 - HMPREF1058_RS07620 0.52 -1.4
174,135 - HMPREF1058_RS07620 0.59 +0.6
174,164 - HMPREF1058_RS07620 0.60 -2.6
174,275 + HMPREF1058_RS07620 0.67 -0.8
174,276 - HMPREF1058_RS07620 0.67 +0.7
174,276 - HMPREF1058_RS07620 0.67 -0.7
174,313 - HMPREF1058_RS07620 0.69 -1.5
174,314 + HMPREF1058_RS07620 0.69 -2.1
174,321 + HMPREF1058_RS07620 0.70 +0.9
174,332 + HMPREF1058_RS07620 0.70 +1.0
174,333 - HMPREF1058_RS07620 0.71 -1.4
174,333 - HMPREF1058_RS07620 0.71 -0.4
174,460 + HMPREF1058_RS07620 0.78 -1.2
174,461 - HMPREF1058_RS07620 0.78 +0.0
174,571 - HMPREF1058_RS07620 0.85 +0.2
174,582 + HMPREF1058_RS07620 0.85 -0.7
174,594 + HMPREF1058_RS07620 0.86 -1.4
174,609 - HMPREF1058_RS07620 0.87 -0.2
174,631 - HMPREF1058_RS07620 0.88 +0.7
174,636 + HMPREF1058_RS07620 0.89 -1.2
174,641 - HMPREF1058_RS07620 0.89 -1.8
174,646 - HMPREF1058_RS07620 0.89 -3.5
174,650 - HMPREF1058_RS07620 0.89 -0.5
174,695 - -2.1
174,704 - +0.3
174,729 + +1.8
174,729 + +0.9
174,730 - -1.4
174,750 - -0.0
174,799 + -2.0
174,799 + -1.1
174,799 + -0.7
174,808 - -0.3
174,842 + +1.6
174,862 - -2.9
174,885 + -1.6
174,894 + +0.3
175,041 + -0.3
175,043 + -1.3
175,086 + HMPREF1058_RS07615 0.12 -1.1
175,089 + HMPREF1058_RS07615 0.12 -1.8
175,172 + HMPREF1058_RS07615 0.18 -2.1
175,189 + HMPREF1058_RS07615 0.20 -1.7
175,341 + HMPREF1058_RS07615 0.31 -2.4
175,670 + HMPREF1058_RS07615 0.56 -3.1
175,675 + HMPREF1058_RS07615 0.56 -1.5
175,675 + HMPREF1058_RS07615 0.56 -2.5
175,675 + HMPREF1058_RS07615 0.56 -1.1
175,841 + HMPREF1058_RS07615 0.69 +0.1
175,841 + HMPREF1058_RS07615 0.69 +0.4
175,896 + HMPREF1058_RS07615 0.73 -0.1
175,975 + HMPREF1058_RS07615 0.79 -1.5
175,975 + HMPREF1058_RS07615 0.79 -0.8
175,975 + HMPREF1058_RS07615 0.79 -1.5
176,066 + HMPREF1058_RS07615 0.86 -0.4
176,115 + HMPREF1058_RS07615 0.90 -2.0
176,257 + -0.5

Or see this region's nucleotide sequence