Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07620 and HMPREF1058_RS07615 are separated by 105 nucleotides HMPREF1058_RS07615 and HMPREF1058_RS07610 are separated by 35 nucleotides
HMPREF1058_RS07620: HMPREF1058_RS07620 - long-chain fatty acid--CoA ligase, at 173,152 to 174,825
_RS07620
HMPREF1058_RS07615: HMPREF1058_RS07615 - tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB, at 174,931 to 176,247
_RS07615
HMPREF1058_RS07610: HMPREF1058_RS07610 - glycosyltransferase family 2 protein, at 176,283 to 177,308
_RS07610
Position (kb)
174
175
176
177 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 173.980 kb on - strand, within HMPREF1058_RS07620 at 173.980 kb on - strand, within HMPREF1058_RS07620 at 173.995 kb on - strand, within HMPREF1058_RS07620 at 173.995 kb on - strand, within HMPREF1058_RS07620 at 174.004 kb on + strand, within HMPREF1058_RS07620 at 174.016 kb on - strand, within HMPREF1058_RS07620 at 174.016 kb on - strand, within HMPREF1058_RS07620 at 174.135 kb on - strand, within HMPREF1058_RS07620 at 174.164 kb on - strand, within HMPREF1058_RS07620 at 174.275 kb on + strand, within HMPREF1058_RS07620 at 174.276 kb on - strand, within HMPREF1058_RS07620 at 174.276 kb on - strand, within HMPREF1058_RS07620 at 174.313 kb on - strand, within HMPREF1058_RS07620 at 174.314 kb on + strand, within HMPREF1058_RS07620 at 174.321 kb on + strand, within HMPREF1058_RS07620 at 174.332 kb on + strand, within HMPREF1058_RS07620 at 174.333 kb on - strand, within HMPREF1058_RS07620 at 174.333 kb on - strand, within HMPREF1058_RS07620 at 174.460 kb on + strand, within HMPREF1058_RS07620 at 174.461 kb on - strand, within HMPREF1058_RS07620 at 174.571 kb on - strand, within HMPREF1058_RS07620 at 174.582 kb on + strand, within HMPREF1058_RS07620 at 174.594 kb on + strand, within HMPREF1058_RS07620 at 174.609 kb on - strand, within HMPREF1058_RS07620 at 174.631 kb on - strand, within HMPREF1058_RS07620 at 174.636 kb on + strand, within HMPREF1058_RS07620 at 174.641 kb on - strand, within HMPREF1058_RS07620 at 174.646 kb on - strand, within HMPREF1058_RS07620 at 174.650 kb on - strand, within HMPREF1058_RS07620 at 174.695 kb on - strand at 174.704 kb on - strand at 174.729 kb on + strand at 174.729 kb on + strand at 174.730 kb on - strand at 174.750 kb on - strand at 174.799 kb on + strand at 174.799 kb on + strand at 174.799 kb on + strand at 174.808 kb on - strand at 174.842 kb on + strand at 174.862 kb on - strand at 174.885 kb on + strand at 174.894 kb on + strand at 175.041 kb on + strand at 175.043 kb on + strand at 175.086 kb on + strand, within HMPREF1058_RS07615 at 175.089 kb on + strand, within HMPREF1058_RS07615 at 175.172 kb on + strand, within HMPREF1058_RS07615 at 175.189 kb on + strand, within HMPREF1058_RS07615 at 175.341 kb on + strand, within HMPREF1058_RS07615 at 175.670 kb on + strand, within HMPREF1058_RS07615 at 175.675 kb on + strand, within HMPREF1058_RS07615 at 175.675 kb on + strand, within HMPREF1058_RS07615 at 175.675 kb on + strand, within HMPREF1058_RS07615 at 175.841 kb on + strand, within HMPREF1058_RS07615 at 175.841 kb on + strand, within HMPREF1058_RS07615 at 175.896 kb on + strand, within HMPREF1058_RS07615 at 175.975 kb on + strand, within HMPREF1058_RS07615 at 175.975 kb on + strand, within HMPREF1058_RS07615 at 175.975 kb on + strand, within HMPREF1058_RS07615 at 176.066 kb on + strand, within HMPREF1058_RS07615 at 176.115 kb on + strand, within HMPREF1058_RS07615 at 176.257 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source remove 173,980 - HMPREF1058_RS07620 0.49 +0.5 173,980 - HMPREF1058_RS07620 0.49 +0.6 173,995 - HMPREF1058_RS07620 0.50 -0.9 173,995 - HMPREF1058_RS07620 0.50 -1.6 174,004 + HMPREF1058_RS07620 0.51 +0.0 174,016 - HMPREF1058_RS07620 0.52 +0.3 174,016 - HMPREF1058_RS07620 0.52 -1.4 174,135 - HMPREF1058_RS07620 0.59 +0.6 174,164 - HMPREF1058_RS07620 0.60 -2.6 174,275 + HMPREF1058_RS07620 0.67 -0.8 174,276 - HMPREF1058_RS07620 0.67 +0.7 174,276 - HMPREF1058_RS07620 0.67 -0.7 174,313 - HMPREF1058_RS07620 0.69 -1.5 174,314 + HMPREF1058_RS07620 0.69 -2.1 174,321 + HMPREF1058_RS07620 0.70 +0.9 174,332 + HMPREF1058_RS07620 0.70 +1.0 174,333 - HMPREF1058_RS07620 0.71 -1.4 174,333 - HMPREF1058_RS07620 0.71 -0.4 174,460 + HMPREF1058_RS07620 0.78 -1.2 174,461 - HMPREF1058_RS07620 0.78 +0.0 174,571 - HMPREF1058_RS07620 0.85 +0.2 174,582 + HMPREF1058_RS07620 0.85 -0.7 174,594 + HMPREF1058_RS07620 0.86 -1.4 174,609 - HMPREF1058_RS07620 0.87 -0.2 174,631 - HMPREF1058_RS07620 0.88 +0.7 174,636 + HMPREF1058_RS07620 0.89 -1.2 174,641 - HMPREF1058_RS07620 0.89 -1.8 174,646 - HMPREF1058_RS07620 0.89 -3.5 174,650 - HMPREF1058_RS07620 0.89 -0.5 174,695 - -2.1 174,704 - +0.3 174,729 + +1.8 174,729 + +0.9 174,730 - -1.4 174,750 - -0.0 174,799 + -2.0 174,799 + -1.1 174,799 + -0.7 174,808 - -0.3 174,842 + +1.6 174,862 - -2.9 174,885 + -1.6 174,894 + +0.3 175,041 + -0.3 175,043 + -1.3 175,086 + HMPREF1058_RS07615 0.12 -1.1 175,089 + HMPREF1058_RS07615 0.12 -1.8 175,172 + HMPREF1058_RS07615 0.18 -2.1 175,189 + HMPREF1058_RS07615 0.20 -1.7 175,341 + HMPREF1058_RS07615 0.31 -2.4 175,670 + HMPREF1058_RS07615 0.56 -3.1 175,675 + HMPREF1058_RS07615 0.56 -1.5 175,675 + HMPREF1058_RS07615 0.56 -2.5 175,675 + HMPREF1058_RS07615 0.56 -1.1 175,841 + HMPREF1058_RS07615 0.69 +0.1 175,841 + HMPREF1058_RS07615 0.69 +0.4 175,896 + HMPREF1058_RS07615 0.73 -0.1 175,975 + HMPREF1058_RS07615 0.79 -1.5 175,975 + HMPREF1058_RS07615 0.79 -0.8 175,975 + HMPREF1058_RS07615 0.79 -1.5 176,066 + HMPREF1058_RS07615 0.86 -0.4 176,115 + HMPREF1058_RS07615 0.90 -2.0 176,257 + -0.5
Or see this region's nucleotide sequence