Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07460 and HMPREF1058_RS07455 are separated by 53 nucleotides HMPREF1058_RS07455 and HMPREF1058_RS07450 are separated by 90 nucleotides
HMPREF1058_RS07460: HMPREF1058_RS07460 - DUF1343 domain-containing protein, at 219,119 to 220,279
_RS07460
HMPREF1058_RS07455: HMPREF1058_RS07455 - HDIG domain-containing protein, at 220,333 to 220,869
_RS07455
HMPREF1058_RS07450: HMPREF1058_RS07450 - LPS-assembly protein LptD, at 220,960 to 223,695
_RS07450
Position (kb) 220
221 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 219.394 kb on + strand, within HMPREF1058_RS07460 at 219.476 kb on + strand, within HMPREF1058_RS07460 at 219.497 kb on - strand, within HMPREF1058_RS07460 at 219.547 kb on - strand, within HMPREF1058_RS07460 at 219.855 kb on - strand, within HMPREF1058_RS07460 at 219.858 kb on + strand, within HMPREF1058_RS07460 at 219.876 kb on + strand, within HMPREF1058_RS07460 at 219.876 kb on + strand, within HMPREF1058_RS07460 at 219.876 kb on + strand, within HMPREF1058_RS07460 at 219.876 kb on + strand, within HMPREF1058_RS07460 at 219.877 kb on - strand, within HMPREF1058_RS07460 at 219.877 kb on - strand, within HMPREF1058_RS07460 at 219.882 kb on + strand, within HMPREF1058_RS07460 at 219.896 kb on + strand, within HMPREF1058_RS07460 at 219.927 kb on - strand, within HMPREF1058_RS07460 at 219.950 kb on - strand, within HMPREF1058_RS07460 at 219.969 kb on + strand, within HMPREF1058_RS07460 at 220.082 kb on + strand, within HMPREF1058_RS07460 at 220.083 kb on - strand, within HMPREF1058_RS07460 at 220.083 kb on - strand, within HMPREF1058_RS07460 at 220.083 kb on - strand, within HMPREF1058_RS07460 at 220.170 kb on - strand at 220.172 kb on + strand at 220.173 kb on - strand at 220.178 kb on + strand at 220.179 kb on - strand at 220.240 kb on + strand at 220.356 kb on + strand at 220.360 kb on + strand at 220.389 kb on + strand, within HMPREF1058_RS07455 at 220.390 kb on - strand, within HMPREF1058_RS07455 at 220.509 kb on + strand, within HMPREF1058_RS07455 at 220.515 kb on + strand, within HMPREF1058_RS07455 at 220.559 kb on - strand, within HMPREF1058_RS07455 at 220.561 kb on - strand, within HMPREF1058_RS07455 at 220.665 kb on + strand, within HMPREF1058_RS07455 at 220.666 kb on - strand, within HMPREF1058_RS07455 at 220.842 kb on + strand at 220.896 kb on + strand at 220.925 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source remove 219,394 + HMPREF1058_RS07460 0.24 +2.7 219,476 + HMPREF1058_RS07460 0.31 +0.7 219,497 - HMPREF1058_RS07460 0.33 +0.5 219,547 - HMPREF1058_RS07460 0.37 -0.0 219,855 - HMPREF1058_RS07460 0.63 -1.7 219,858 + HMPREF1058_RS07460 0.64 -0.1 219,876 + HMPREF1058_RS07460 0.65 +1.0 219,876 + HMPREF1058_RS07460 0.65 +0.8 219,876 + HMPREF1058_RS07460 0.65 -0.3 219,876 + HMPREF1058_RS07460 0.65 +0.3 219,877 - HMPREF1058_RS07460 0.65 -0.6 219,877 - HMPREF1058_RS07460 0.65 -0.0 219,882 + HMPREF1058_RS07460 0.66 -0.4 219,896 + HMPREF1058_RS07460 0.67 -0.6 219,927 - HMPREF1058_RS07460 0.70 -1.3 219,950 - HMPREF1058_RS07460 0.72 +1.4 219,969 + HMPREF1058_RS07460 0.73 -0.1 220,082 + HMPREF1058_RS07460 0.83 +0.2 220,083 - HMPREF1058_RS07460 0.83 -0.8 220,083 - HMPREF1058_RS07460 0.83 +1.7 220,083 - HMPREF1058_RS07460 0.83 -0.0 220,170 - -2.6 220,172 + +2.8 220,173 - -0.4 220,178 + -1.8 220,179 - -1.5 220,240 + -1.7 220,356 + -2.8 220,360 + -2.6 220,389 + HMPREF1058_RS07455 0.10 -0.7 220,390 - HMPREF1058_RS07455 0.11 -1.1 220,509 + HMPREF1058_RS07455 0.33 -2.0 220,515 + HMPREF1058_RS07455 0.34 -1.7 220,559 - HMPREF1058_RS07455 0.42 -0.2 220,561 - HMPREF1058_RS07455 0.42 -1.7 220,665 + HMPREF1058_RS07455 0.62 -1.1 220,666 - HMPREF1058_RS07455 0.62 -0.5 220,842 + -3.0 220,896 + -0.5 220,925 + -0.3
Or see this region's nucleotide sequence