Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06880

Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS06885 and HMPREF1058_RS06880 are separated by 158 nucleotidesHMPREF1058_RS06880 and HMPREF1058_RS06875 are separated by 25 nucleotides HMPREF1058_RS06885: HMPREF1058_RS06885 - glutamine--fructose-6-phosphate transaminase (isomerizing), at 369,603 to 371,447 _RS06885 HMPREF1058_RS06880: HMPREF1058_RS06880 - amidophosphoribosyltransferase, at 371,606 to 373,489 _RS06880 HMPREF1058_RS06875: HMPREF1058_RS06875 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 373,515 to 374,591 _RS06875 Position (kb) 371 372 373 374Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 370.648 kb on + strand, within HMPREF1058_RS06885at 370.651 kb on + strand, within HMPREF1058_RS06885at 370.652 kb on - strand, within HMPREF1058_RS06885at 370.652 kb on - strand, within HMPREF1058_RS06885at 370.652 kb on - strand, within HMPREF1058_RS06885at 370.724 kb on + strand, within HMPREF1058_RS06885at 370.728 kb on + strand, within HMPREF1058_RS06885at 370.734 kb on - strand, within HMPREF1058_RS06885at 370.735 kb on + strand, within HMPREF1058_RS06885at 370.736 kb on - strand, within HMPREF1058_RS06885at 370.736 kb on - strand, within HMPREF1058_RS06885at 370.770 kb on - strand, within HMPREF1058_RS06885at 370.796 kb on - strand, within HMPREF1058_RS06885at 370.796 kb on - strand, within HMPREF1058_RS06885at 370.808 kb on - strand, within HMPREF1058_RS06885at 370.853 kb on + strand, within HMPREF1058_RS06885at 370.853 kb on + strand, within HMPREF1058_RS06885at 370.853 kb on + strand, within HMPREF1058_RS06885at 370.908 kb on + strand, within HMPREF1058_RS06885at 370.976 kb on + strand, within HMPREF1058_RS06885at 371.007 kb on + strand, within HMPREF1058_RS06885at 371.008 kb on - strand, within HMPREF1058_RS06885at 371.016 kb on - strand, within HMPREF1058_RS06885at 371.086 kb on + strand, within HMPREF1058_RS06885at 371.091 kb on + strand, within HMPREF1058_RS06885at 371.091 kb on + strand, within HMPREF1058_RS06885at 371.093 kb on + strand, within HMPREF1058_RS06885at 371.093 kb on + strand, within HMPREF1058_RS06885at 371.196 kb on + strand, within HMPREF1058_RS06885at 371.366 kb on - strandat 371.380 kb on + strandat 371.381 kb on - strandat 371.446 kb on - strandat 371.468 kb on + strandat 371.509 kb on + strandat 371.580 kb on - strandat 371.580 kb on - strandat 371.587 kb on + strandat 371.587 kb on + strandat 371.587 kb on + strandat 371.638 kb on + strandat 371.638 kb on + strandat 371.696 kb on + strandat 371.697 kb on - strandat 371.715 kb on - strandat 371.802 kb on - strand, within HMPREF1058_RS06880at 371.804 kb on - strand, within HMPREF1058_RS06880at 371.848 kb on - strand, within HMPREF1058_RS06880at 371.943 kb on + strand, within HMPREF1058_RS06880at 371.944 kb on - strand, within HMPREF1058_RS06880at 371.944 kb on - strand, within HMPREF1058_RS06880at 371.945 kb on + strandat 371.945 kb on + strand, within HMPREF1058_RS06880at 371.945 kb on + strand, within HMPREF1058_RS06880at 371.945 kb on + strandat 371.945 kb on + strand, within HMPREF1058_RS06880at 371.946 kb on - strand, within HMPREF1058_RS06880at 371.946 kb on - strand, within HMPREF1058_RS06880at 371.946 kb on - strand, within HMPREF1058_RS06880at 371.946 kb on - strand, within HMPREF1058_RS06880at 371.946 kb on - strand, within HMPREF1058_RS06880at 371.946 kb on - strand, within HMPREF1058_RS06880at 371.946 kb on - strand, within HMPREF1058_RS06880at 371.947 kb on + strand, within HMPREF1058_RS06880at 372.122 kb on + strand, within HMPREF1058_RS06880at 372.123 kb on - strand, within HMPREF1058_RS06880at 372.134 kb on + strand, within HMPREF1058_RS06880at 372.134 kb on + strand, within HMPREF1058_RS06880at 372.134 kb on + strand, within HMPREF1058_RS06880at 372.135 kb on - strand, within HMPREF1058_RS06880at 372.135 kb on - strand, within HMPREF1058_RS06880at 372.136 kb on + strand, within HMPREF1058_RS06880at 372.140 kb on - strand, within HMPREF1058_RS06880at 372.240 kb on + strand, within HMPREF1058_RS06880at 372.241 kb on - strand, within HMPREF1058_RS06880at 372.381 kb on - strand, within HMPREF1058_RS06880at 372.403 kb on - strand, within HMPREF1058_RS06880at 372.444 kb on + strand, within HMPREF1058_RS06880at 372.490 kb on + strand, within HMPREF1058_RS06880at 372.492 kb on + strand, within HMPREF1058_RS06880at 372.492 kb on + strand, within HMPREF1058_RS06880at 372.493 kb on - strand, within HMPREF1058_RS06880at 372.565 kb on + strand, within HMPREF1058_RS06880at 372.565 kb on + strand, within HMPREF1058_RS06880at 372.566 kb on - strand, within HMPREF1058_RS06880at 372.599 kb on + strand, within HMPREF1058_RS06880at 372.600 kb on - strand, within HMPREF1058_RS06880at 372.659 kb on + strand, within HMPREF1058_RS06880at 372.660 kb on - strand, within HMPREF1058_RS06880at 372.660 kb on - strand, within HMPREF1058_RS06880at 372.689 kb on - strand, within HMPREF1058_RS06880at 372.744 kb on - strand, within HMPREF1058_RS06880at 372.771 kb on + strand, within HMPREF1058_RS06880at 372.846 kb on + strand, within HMPREF1058_RS06880at 372.872 kb on - strand, within HMPREF1058_RS06880at 372.921 kb on - strand, within HMPREF1058_RS06880at 372.921 kb on - strand, within HMPREF1058_RS06880at 372.926 kb on - strand, within HMPREF1058_RS06880at 372.932 kb on + strand, within HMPREF1058_RS06880at 372.971 kb on - strand, within HMPREF1058_RS06880at 372.998 kb on - strand, within HMPREF1058_RS06880at 373.194 kb on - strand, within HMPREF1058_RS06880at 373.194 kb on - strand, within HMPREF1058_RS06880at 373.244 kb on + strand, within HMPREF1058_RS06880at 373.274 kb on - strand, within HMPREF1058_RS06880at 373.401 kb on - strandat 373.420 kb on + strandat 373.458 kb on + strandat 373.459 kb on - strandat 373.463 kb on + strandat 373.464 kb on - strandat 373.464 kb on - strandat 373.464 kb on - strandat 373.464 kb on - strandat 373.478 kb on + strandat 373.508 kb on - strandat 373.526 kb on - strandat 373.676 kb on - strand, within HMPREF1058_RS06875at 373.676 kb on - strand, within HMPREF1058_RS06875at 373.760 kb on + strand, within HMPREF1058_RS06875at 373.804 kb on - strand, within HMPREF1058_RS06875at 373.929 kb on - strand, within HMPREF1058_RS06875at 373.937 kb on - strand, within HMPREF1058_RS06875at 373.989 kb on + strand, within HMPREF1058_RS06875at 373.990 kb on - strand, within HMPREF1058_RS06875at 373.993 kb on + strandat 373.997 kb on + strand, within HMPREF1058_RS06875at 373.997 kb on + strand, within HMPREF1058_RS06875at 373.997 kb on + strand, within HMPREF1058_RS06875at 374.002 kb on + strand, within HMPREF1058_RS06875at 374.025 kb on + strand, within HMPREF1058_RS06875at 374.316 kb on + strand, within HMPREF1058_RS06875at 374.316 kb on + strand, within HMPREF1058_RS06875at 374.360 kb on + strand, within HMPREF1058_RS06875at 374.417 kb on + strand, within HMPREF1058_RS06875at 374.418 kb on - strand, within HMPREF1058_RS06875at 374.418 kb on - strand, within HMPREF1058_RS06875

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
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370,648 + HMPREF1058_RS06885 0.57 -0.7
370,651 + HMPREF1058_RS06885 0.57 -2.0
370,652 - HMPREF1058_RS06885 0.57 +0.2
370,652 - HMPREF1058_RS06885 0.57 +0.1
370,652 - HMPREF1058_RS06885 0.57 -1.7
370,724 + HMPREF1058_RS06885 0.61 +0.1
370,728 + HMPREF1058_RS06885 0.61 -0.8
370,734 - HMPREF1058_RS06885 0.61 -1.9
370,735 + HMPREF1058_RS06885 0.61 +0.3
370,736 - HMPREF1058_RS06885 0.61 -2.3
370,736 - HMPREF1058_RS06885 0.61 -2.0
370,770 - HMPREF1058_RS06885 0.63 +0.4
370,796 - HMPREF1058_RS06885 0.65 -2.0
370,796 - HMPREF1058_RS06885 0.65 -2.0
370,808 - HMPREF1058_RS06885 0.65 -0.7
370,853 + HMPREF1058_RS06885 0.68 +0.7
370,853 + HMPREF1058_RS06885 0.68 -0.4
370,853 + HMPREF1058_RS06885 0.68 +0.5
370,908 + HMPREF1058_RS06885 0.71 -2.2
370,976 + HMPREF1058_RS06885 0.74 -2.9
371,007 + HMPREF1058_RS06885 0.76 +0.9
371,008 - HMPREF1058_RS06885 0.76 -3.3
371,016 - HMPREF1058_RS06885 0.77 -2.2
371,086 + HMPREF1058_RS06885 0.80 +0.9
371,091 + HMPREF1058_RS06885 0.81 -0.2
371,091 + HMPREF1058_RS06885 0.81 +0.4
371,093 + HMPREF1058_RS06885 0.81 +0.9
371,093 + HMPREF1058_RS06885 0.81 +0.2
371,196 + HMPREF1058_RS06885 0.86 +2.3
371,366 - -4.6
371,380 + -1.4
371,381 - -1.2
371,446 - -3.8
371,468 + -0.2
371,509 + +1.4
371,580 - -0.9
371,580 - -2.2
371,587 + -1.7
371,587 + -0.5
371,587 + -0.1
371,638 + -1.7
371,638 + -1.1
371,696 + -2.7
371,697 - -1.9
371,715 - -1.4
371,802 - HMPREF1058_RS06880 0.10 -0.9
371,804 - HMPREF1058_RS06880 0.11 -0.7
371,848 - HMPREF1058_RS06880 0.13 -2.4
371,943 + HMPREF1058_RS06880 0.18 -1.6
371,944 - HMPREF1058_RS06880 0.18 -3.0
371,944 - HMPREF1058_RS06880 0.18 -3.8
371,945 + -0.2
371,945 + HMPREF1058_RS06880 0.18 -4.2
371,945 + HMPREF1058_RS06880 0.18 -2.3
371,945 + +0.1
371,945 + HMPREF1058_RS06880 0.18 -1.9
371,946 - HMPREF1058_RS06880 0.18 -2.6
371,946 - HMPREF1058_RS06880 0.18 -1.3
371,946 - HMPREF1058_RS06880 0.18 -2.3
371,946 - HMPREF1058_RS06880 0.18 -0.3
371,946 - HMPREF1058_RS06880 0.18 -3.0
371,946 - HMPREF1058_RS06880 0.18 -0.2
371,946 - HMPREF1058_RS06880 0.18 -2.7
371,947 + HMPREF1058_RS06880 0.18 -1.9
372,122 + HMPREF1058_RS06880 0.27 -3.8
372,123 - HMPREF1058_RS06880 0.27 -1.8
372,134 + HMPREF1058_RS06880 0.28 -2.1
372,134 + HMPREF1058_RS06880 0.28 -1.7
372,134 + HMPREF1058_RS06880 0.28 -1.6
372,135 - HMPREF1058_RS06880 0.28 -1.6
372,135 - HMPREF1058_RS06880 0.28 -0.2
372,136 + HMPREF1058_RS06880 0.28 -2.1
372,140 - HMPREF1058_RS06880 0.28 -4.3
372,240 + HMPREF1058_RS06880 0.34 -2.9
372,241 - HMPREF1058_RS06880 0.34 -3.7
372,381 - HMPREF1058_RS06880 0.41 -4.3
372,403 - HMPREF1058_RS06880 0.42 -0.6
372,444 + HMPREF1058_RS06880 0.44 -0.5
372,490 + HMPREF1058_RS06880 0.47 -2.7
372,492 + HMPREF1058_RS06880 0.47 -1.9
372,492 + HMPREF1058_RS06880 0.47 -4.4
372,493 - HMPREF1058_RS06880 0.47 -1.3
372,565 + HMPREF1058_RS06880 0.51 -3.2
372,565 + HMPREF1058_RS06880 0.51 +0.1
372,566 - HMPREF1058_RS06880 0.51 -4.1
372,599 + HMPREF1058_RS06880 0.53 -0.4
372,600 - HMPREF1058_RS06880 0.53 -2.7
372,659 + HMPREF1058_RS06880 0.56 -1.8
372,660 - HMPREF1058_RS06880 0.56 -2.5
372,660 - HMPREF1058_RS06880 0.56 -2.6
372,689 - HMPREF1058_RS06880 0.57 -3.9
372,744 - HMPREF1058_RS06880 0.60 -2.4
372,771 + HMPREF1058_RS06880 0.62 -2.5
372,846 + HMPREF1058_RS06880 0.66 -4.2
372,872 - HMPREF1058_RS06880 0.67 -1.8
372,921 - HMPREF1058_RS06880 0.70 -1.9
372,921 - HMPREF1058_RS06880 0.70 -0.6
372,926 - HMPREF1058_RS06880 0.70 -3.5
372,932 + HMPREF1058_RS06880 0.70 -3.5
372,971 - HMPREF1058_RS06880 0.72 -3.0
372,998 - HMPREF1058_RS06880 0.74 -2.9
373,194 - HMPREF1058_RS06880 0.84 -1.1
373,194 - HMPREF1058_RS06880 0.84 -0.5
373,244 + HMPREF1058_RS06880 0.87 -3.2
373,274 - HMPREF1058_RS06880 0.89 +0.1
373,401 - -2.8
373,420 + -1.8
373,458 + -0.8
373,459 - -2.9
373,463 + -0.5
373,464 - -3.1
373,464 - -1.9
373,464 - -2.8
373,464 - -3.4
373,478 + -1.7
373,508 - -0.9
373,526 - -0.9
373,676 - HMPREF1058_RS06875 0.15 -2.0
373,676 - HMPREF1058_RS06875 0.15 -0.7
373,760 + HMPREF1058_RS06875 0.23 -0.3
373,804 - HMPREF1058_RS06875 0.27 -2.6
373,929 - HMPREF1058_RS06875 0.38 +0.3
373,937 - HMPREF1058_RS06875 0.39 +0.2
373,989 + HMPREF1058_RS06875 0.44 -0.9
373,990 - HMPREF1058_RS06875 0.44 -0.4
373,993 + +1.0
373,997 + HMPREF1058_RS06875 0.45 -0.2
373,997 + HMPREF1058_RS06875 0.45 -0.4
373,997 + HMPREF1058_RS06875 0.45 -2.1
374,002 + HMPREF1058_RS06875 0.45 -0.2
374,025 + HMPREF1058_RS06875 0.47 +0.2
374,316 + HMPREF1058_RS06875 0.74 +1.5
374,316 + HMPREF1058_RS06875 0.74 -1.1
374,360 + HMPREF1058_RS06875 0.78 -2.3
374,417 + HMPREF1058_RS06875 0.84 -0.3
374,418 - HMPREF1058_RS06875 0.84 -1.0
374,418 - HMPREF1058_RS06875 0.84 +0.4

Or see this region's nucleotide sequence