Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06565

Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS06570 and HMPREF1058_RS06565 are separated by 203 nucleotidesHMPREF1058_RS06565 and HMPREF1058_RS06560 are separated by 401 nucleotides HMPREF1058_RS06570: HMPREF1058_RS06570 - phosphate ABC transporter ATP-binding protein, at 446,978 to 447,730 _RS06570 HMPREF1058_RS06565: HMPREF1058_RS06565 - phosphate signaling complex protein PhoU, at 447,934 to 448,635 _RS06565 HMPREF1058_RS06560: HMPREF1058_RS06560 - carboxypeptidase-like regulatory domain-containing protein, at 449,037 to 451,610 _RS06560 Position (kb) 447 448 449Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 446.988 kb on + strandat 446.989 kb on - strandat 446.989 kb on - strandat 447.042 kb on + strandat 447.042 kb on + strandat 447.043 kb on - strandat 447.043 kb on - strandat 447.043 kb on - strandat 447.043 kb on - strandat 447.081 kb on + strand, within HMPREF1058_RS06570at 447.191 kb on - strand, within HMPREF1058_RS06570at 447.191 kb on - strand, within HMPREF1058_RS06570at 447.466 kb on - strand, within HMPREF1058_RS06570at 447.514 kb on + strand, within HMPREF1058_RS06570at 447.532 kb on - strand, within HMPREF1058_RS06570at 447.563 kb on + strand, within HMPREF1058_RS06570at 447.564 kb on - strand, within HMPREF1058_RS06570at 447.632 kb on + strand, within HMPREF1058_RS06570at 447.633 kb on - strand, within HMPREF1058_RS06570at 447.633 kb on - strand, within HMPREF1058_RS06570at 447.634 kb on + strand, within HMPREF1058_RS06570at 447.643 kb on + strand, within HMPREF1058_RS06570at 447.654 kb on - strand, within HMPREF1058_RS06570at 447.677 kb on - strandat 447.707 kb on + strandat 447.708 kb on - strandat 447.708 kb on - strandat 447.764 kb on - strandat 447.823 kb on + strandat 447.911 kb on + strandat 447.962 kb on + strandat 447.962 kb on + strandat 448.142 kb on - strand, within HMPREF1058_RS06565at 448.190 kb on + strand, within HMPREF1058_RS06565at 448.296 kb on + strand, within HMPREF1058_RS06565at 448.299 kb on - strand, within HMPREF1058_RS06565at 448.532 kb on + strand, within HMPREF1058_RS06565at 448.533 kb on - strand, within HMPREF1058_RS06565at 448.598 kb on + strandat 448.654 kb on - strandat 448.673 kb on - strandat 448.674 kb on + strandat 448.676 kb on + strandat 448.676 kb on + strandat 448.841 kb on + strandat 448.841 kb on + strandat 448.972 kb on + strandat 448.972 kb on + strandat 449.001 kb on + strandat 449.017 kb on + strandat 449.049 kb on + strandat 449.049 kb on + strandat 449.068 kb on + strandat 449.081 kb on - strandat 449.271 kb on + strandat 449.272 kb on - strandat 449.291 kb on + strandat 449.292 kb on - strandat 449.293 kb on + strandat 449.385 kb on + strand, within HMPREF1058_RS06560at 449.399 kb on + strand, within HMPREF1058_RS06560at 449.472 kb on + strand, within HMPREF1058_RS06560at 449.472 kb on + strand, within HMPREF1058_RS06560at 449.473 kb on - strand, within HMPREF1058_RS06560at 449.483 kb on + strand, within HMPREF1058_RS06560at 449.484 kb on - strand, within HMPREF1058_RS06560at 449.548 kb on - strand, within HMPREF1058_RS06560at 449.548 kb on - strand, within HMPREF1058_RS06560at 449.548 kb on - strand, within HMPREF1058_RS06560at 449.615 kb on + strand, within HMPREF1058_RS06560

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
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446,988 + +0.1
446,989 - +2.2
446,989 - +1.7
447,042 + -0.1
447,042 + -0.5
447,043 - +0.4
447,043 - -0.0
447,043 - -0.6
447,043 - -2.2
447,081 + HMPREF1058_RS06570 0.14 -0.6
447,191 - HMPREF1058_RS06570 0.28 -0.8
447,191 - HMPREF1058_RS06570 0.28 +0.1
447,466 - HMPREF1058_RS06570 0.65 +0.8
447,514 + HMPREF1058_RS06570 0.71 -0.7
447,532 - HMPREF1058_RS06570 0.74 -0.7
447,563 + HMPREF1058_RS06570 0.78 +0.1
447,564 - HMPREF1058_RS06570 0.78 -0.2
447,632 + HMPREF1058_RS06570 0.87 +0.8
447,633 - HMPREF1058_RS06570 0.87 -2.3
447,633 - HMPREF1058_RS06570 0.87 +0.2
447,634 + HMPREF1058_RS06570 0.87 -0.7
447,643 + HMPREF1058_RS06570 0.88 -1.2
447,654 - HMPREF1058_RS06570 0.90 +1.4
447,677 - -1.2
447,707 + +0.7
447,708 - -0.2
447,708 - +1.6
447,764 - -2.7
447,823 + +0.3
447,911 + -0.9
447,962 + -1.6
447,962 + -1.5
448,142 - HMPREF1058_RS06565 0.30 -0.2
448,190 + HMPREF1058_RS06565 0.36 -3.7
448,296 + HMPREF1058_RS06565 0.52 -3.0
448,299 - HMPREF1058_RS06565 0.52 -4.0
448,532 + HMPREF1058_RS06565 0.85 -1.8
448,533 - HMPREF1058_RS06565 0.85 -2.8
448,598 + -0.0
448,654 - +0.8
448,673 - +1.6
448,674 + -1.5
448,676 + +0.7
448,676 + +0.2
448,841 + -1.7
448,841 + -2.2
448,972 + +0.5
448,972 + +0.7
449,001 + +1.6
449,017 + -0.6
449,049 + -2.0
449,049 + -1.3
449,068 + -1.8
449,081 - -0.8
449,271 + -2.7
449,272 - +0.1
449,291 + -2.7
449,292 - -2.2
449,293 + -1.4
449,385 + HMPREF1058_RS06560 0.14 -2.4
449,399 + HMPREF1058_RS06560 0.14 -1.1
449,472 + HMPREF1058_RS06560 0.17 -1.1
449,472 + HMPREF1058_RS06560 0.17 -1.6
449,473 - HMPREF1058_RS06560 0.17 +1.4
449,483 + HMPREF1058_RS06560 0.17 -0.4
449,484 - HMPREF1058_RS06560 0.17 -2.4
449,548 - HMPREF1058_RS06560 0.20 -0.6
449,548 - HMPREF1058_RS06560 0.20 -1.6
449,548 - HMPREF1058_RS06560 0.20 +0.4
449,615 + HMPREF1058_RS06560 0.22 +0.4

Or see this region's nucleotide sequence