Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06570 and HMPREF1058_RS06565 are separated by 203 nucleotides HMPREF1058_RS06565 and HMPREF1058_RS06560 are separated by 401 nucleotides
HMPREF1058_RS06570: HMPREF1058_RS06570 - phosphate ABC transporter ATP-binding protein, at 446,978 to 447,730
_RS06570
HMPREF1058_RS06565: HMPREF1058_RS06565 - phosphate signaling complex protein PhoU, at 447,934 to 448,635
_RS06565
HMPREF1058_RS06560: HMPREF1058_RS06560 - carboxypeptidase-like regulatory domain-containing protein, at 449,037 to 451,610
_RS06560
Position (kb) 447
448
449 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 446.988 kb on + strand at 446.989 kb on - strand at 446.989 kb on - strand at 447.042 kb on + strand at 447.042 kb on + strand at 447.043 kb on - strand at 447.043 kb on - strand at 447.043 kb on - strand at 447.043 kb on - strand at 447.081 kb on + strand, within HMPREF1058_RS06570 at 447.191 kb on - strand, within HMPREF1058_RS06570 at 447.191 kb on - strand, within HMPREF1058_RS06570 at 447.466 kb on - strand, within HMPREF1058_RS06570 at 447.514 kb on + strand, within HMPREF1058_RS06570 at 447.532 kb on - strand, within HMPREF1058_RS06570 at 447.563 kb on + strand, within HMPREF1058_RS06570 at 447.564 kb on - strand, within HMPREF1058_RS06570 at 447.632 kb on + strand, within HMPREF1058_RS06570 at 447.633 kb on - strand, within HMPREF1058_RS06570 at 447.633 kb on - strand, within HMPREF1058_RS06570 at 447.634 kb on + strand, within HMPREF1058_RS06570 at 447.643 kb on + strand, within HMPREF1058_RS06570 at 447.654 kb on - strand, within HMPREF1058_RS06570 at 447.677 kb on - strand at 447.707 kb on + strand at 447.708 kb on - strand at 447.708 kb on - strand at 447.764 kb on - strand at 447.823 kb on + strand at 447.911 kb on + strand at 447.962 kb on + strand at 447.962 kb on + strand at 448.142 kb on - strand, within HMPREF1058_RS06565 at 448.190 kb on + strand, within HMPREF1058_RS06565 at 448.296 kb on + strand, within HMPREF1058_RS06565 at 448.299 kb on - strand, within HMPREF1058_RS06565 at 448.532 kb on + strand, within HMPREF1058_RS06565 at 448.533 kb on - strand, within HMPREF1058_RS06565 at 448.598 kb on + strand at 448.654 kb on - strand at 448.673 kb on - strand at 448.674 kb on + strand at 448.676 kb on + strand at 448.676 kb on + strand at 448.841 kb on + strand at 448.841 kb on + strand at 448.972 kb on + strand at 448.972 kb on + strand at 449.001 kb on + strand at 449.017 kb on + strand at 449.049 kb on + strand at 449.049 kb on + strand at 449.068 kb on + strand at 449.081 kb on - strand at 449.271 kb on + strand at 449.272 kb on - strand at 449.291 kb on + strand at 449.292 kb on - strand at 449.293 kb on + strand at 449.385 kb on + strand, within HMPREF1058_RS06560 at 449.399 kb on + strand, within HMPREF1058_RS06560 at 449.472 kb on + strand, within HMPREF1058_RS06560 at 449.472 kb on + strand, within HMPREF1058_RS06560 at 449.473 kb on - strand, within HMPREF1058_RS06560 at 449.483 kb on + strand, within HMPREF1058_RS06560 at 449.484 kb on - strand, within HMPREF1058_RS06560 at 449.548 kb on - strand, within HMPREF1058_RS06560 at 449.548 kb on - strand, within HMPREF1058_RS06560 at 449.548 kb on - strand, within HMPREF1058_RS06560 at 449.615 kb on + strand, within HMPREF1058_RS06560
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source remove 446,988 + +0.1 446,989 - +2.2 446,989 - +1.7 447,042 + -0.1 447,042 + -0.5 447,043 - +0.4 447,043 - -0.0 447,043 - -0.6 447,043 - -2.2 447,081 + HMPREF1058_RS06570 0.14 -0.6 447,191 - HMPREF1058_RS06570 0.28 -0.8 447,191 - HMPREF1058_RS06570 0.28 +0.1 447,466 - HMPREF1058_RS06570 0.65 +0.8 447,514 + HMPREF1058_RS06570 0.71 -0.7 447,532 - HMPREF1058_RS06570 0.74 -0.7 447,563 + HMPREF1058_RS06570 0.78 +0.1 447,564 - HMPREF1058_RS06570 0.78 -0.2 447,632 + HMPREF1058_RS06570 0.87 +0.8 447,633 - HMPREF1058_RS06570 0.87 -2.3 447,633 - HMPREF1058_RS06570 0.87 +0.2 447,634 + HMPREF1058_RS06570 0.87 -0.7 447,643 + HMPREF1058_RS06570 0.88 -1.2 447,654 - HMPREF1058_RS06570 0.90 +1.4 447,677 - -1.2 447,707 + +0.7 447,708 - -0.2 447,708 - +1.6 447,764 - -2.7 447,823 + +0.3 447,911 + -0.9 447,962 + -1.6 447,962 + -1.5 448,142 - HMPREF1058_RS06565 0.30 -0.2 448,190 + HMPREF1058_RS06565 0.36 -3.7 448,296 + HMPREF1058_RS06565 0.52 -3.0 448,299 - HMPREF1058_RS06565 0.52 -4.0 448,532 + HMPREF1058_RS06565 0.85 -1.8 448,533 - HMPREF1058_RS06565 0.85 -2.8 448,598 + -0.0 448,654 - +0.8 448,673 - +1.6 448,674 + -1.5 448,676 + +0.7 448,676 + +0.2 448,841 + -1.7 448,841 + -2.2 448,972 + +0.5 448,972 + +0.7 449,001 + +1.6 449,017 + -0.6 449,049 + -2.0 449,049 + -1.3 449,068 + -1.8 449,081 - -0.8 449,271 + -2.7 449,272 - +0.1 449,291 + -2.7 449,292 - -2.2 449,293 + -1.4 449,385 + HMPREF1058_RS06560 0.14 -2.4 449,399 + HMPREF1058_RS06560 0.14 -1.1 449,472 + HMPREF1058_RS06560 0.17 -1.1 449,472 + HMPREF1058_RS06560 0.17 -1.6 449,473 - HMPREF1058_RS06560 0.17 +1.4 449,483 + HMPREF1058_RS06560 0.17 -0.4 449,484 - HMPREF1058_RS06560 0.17 -2.4 449,548 - HMPREF1058_RS06560 0.20 -0.6 449,548 - HMPREF1058_RS06560 0.20 -1.6 449,548 - HMPREF1058_RS06560 0.20 +0.4 449,615 + HMPREF1058_RS06560 0.22 +0.4
Or see this region's nucleotide sequence