Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06230 and HMPREF1058_RS06225 are separated by 165 nucleotides HMPREF1058_RS06225 and HMPREF1058_RS06220 are separated by 1 nucleotides
HMPREF1058_RS06230: HMPREF1058_RS06230 - fucose isomerase, at 529,711 to 530,946
_RS06230
HMPREF1058_RS06225: HMPREF1058_RS06225 - pyridoxal phosphate-dependent aminotransferase, at 531,112 to 532,314
_RS06225
HMPREF1058_RS06220: HMPREF1058_RS06220 - ABC transporter permease, at 532,316 to 533,560
_RS06220
Position (kb) 531
532
533 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 530.395 kb on + strand, within HMPREF1058_RS06230 at 530.396 kb on - strand, within HMPREF1058_RS06230 at 530.396 kb on - strand, within HMPREF1058_RS06230 at 530.396 kb on - strand, within HMPREF1058_RS06230 at 530.397 kb on + strand, within HMPREF1058_RS06230 at 530.397 kb on + strand, within HMPREF1058_RS06230 at 530.429 kb on + strand, within HMPREF1058_RS06230 at 530.430 kb on - strand, within HMPREF1058_RS06230 at 530.461 kb on + strand, within HMPREF1058_RS06230 at 530.489 kb on + strand, within HMPREF1058_RS06230 at 530.495 kb on - strand, within HMPREF1058_RS06230 at 530.628 kb on + strand, within HMPREF1058_RS06230 at 530.632 kb on - strand, within HMPREF1058_RS06230 at 530.632 kb on - strand, within HMPREF1058_RS06230 at 530.635 kb on + strand, within HMPREF1058_RS06230 at 530.635 kb on + strand, within HMPREF1058_RS06230 at 530.635 kb on + strand, within HMPREF1058_RS06230 at 530.664 kb on + strand, within HMPREF1058_RS06230 at 530.664 kb on + strand, within HMPREF1058_RS06230 at 530.665 kb on - strand, within HMPREF1058_RS06230 at 530.665 kb on - strand, within HMPREF1058_RS06230 at 530.668 kb on + strand, within HMPREF1058_RS06230 at 530.668 kb on + strand, within HMPREF1058_RS06230 at 530.826 kb on + strand at 530.826 kb on + strand at 530.827 kb on - strand at 530.827 kb on - strand at 530.828 kb on + strand at 530.829 kb on - strand at 530.829 kb on - strand at 530.872 kb on + strand at 530.894 kb on - strand at 530.939 kb on - strand at 530.997 kb on + strand at 531.046 kb on - strand at 531.075 kb on + strand at 531.092 kb on + strand at 531.111 kb on + strand at 531.349 kb on + strand at 531.487 kb on + strand, within HMPREF1058_RS06225 at 531.609 kb on + strand, within HMPREF1058_RS06225 at 531.703 kb on + strand, within HMPREF1058_RS06225 at 531.756 kb on + strand, within HMPREF1058_RS06225 at 531.756 kb on + strand, within HMPREF1058_RS06225 at 531.756 kb on + strand, within HMPREF1058_RS06225 at 531.756 kb on + strand, within HMPREF1058_RS06225 at 531.756 kb on + strand, within HMPREF1058_RS06225 at 531.756 kb on + strand, within HMPREF1058_RS06225
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source remove 530,395 + HMPREF1058_RS06230 0.55 -0.6 530,396 - HMPREF1058_RS06230 0.55 -0.9 530,396 - HMPREF1058_RS06230 0.55 -1.8 530,396 - HMPREF1058_RS06230 0.55 -0.9 530,397 + HMPREF1058_RS06230 0.56 -1.1 530,397 + HMPREF1058_RS06230 0.56 -3.1 530,429 + HMPREF1058_RS06230 0.58 -0.3 530,430 - HMPREF1058_RS06230 0.58 -0.8 530,461 + HMPREF1058_RS06230 0.61 -0.2 530,489 + HMPREF1058_RS06230 0.63 -3.1 530,495 - HMPREF1058_RS06230 0.63 +1.1 530,628 + HMPREF1058_RS06230 0.74 -1.1 530,632 - HMPREF1058_RS06230 0.75 -1.2 530,632 - HMPREF1058_RS06230 0.75 +0.2 530,635 + HMPREF1058_RS06230 0.75 -2.7 530,635 + HMPREF1058_RS06230 0.75 -1.1 530,635 + HMPREF1058_RS06230 0.75 -2.2 530,664 + HMPREF1058_RS06230 0.77 -1.1 530,664 + HMPREF1058_RS06230 0.77 -2.2 530,665 - HMPREF1058_RS06230 0.77 -3.6 530,665 - HMPREF1058_RS06230 0.77 -1.7 530,668 + HMPREF1058_RS06230 0.77 -0.1 530,668 + HMPREF1058_RS06230 0.77 -1.8 530,826 + +0.6 530,826 + -1.2 530,827 - -1.2 530,827 - -1.4 530,828 + -0.5 530,829 - +0.3 530,829 - +0.0 530,872 + -1.0 530,894 - -1.3 530,939 - +0.3 530,997 + +0.5 531,046 - -0.8 531,075 + +0.2 531,092 + -1.6 531,111 + -1.7 531,349 + -0.4 531,487 + HMPREF1058_RS06225 0.31 -3.7 531,609 + HMPREF1058_RS06225 0.41 -2.4 531,703 + HMPREF1058_RS06225 0.49 -0.1 531,756 + HMPREF1058_RS06225 0.54 -2.6 531,756 + HMPREF1058_RS06225 0.54 +0.1 531,756 + HMPREF1058_RS06225 0.54 -0.2 531,756 + HMPREF1058_RS06225 0.54 -0.2 531,756 + HMPREF1058_RS06225 0.54 -2.6 531,756 + HMPREF1058_RS06225 0.54 -0.5
Or see this region's nucleotide sequence