Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05150 and HMPREF1058_RS05145 are separated by 102 nucleotides HMPREF1058_RS05145 and HMPREF1058_RS05140 are separated by 42 nucleotides
HMPREF1058_RS05150: HMPREF1058_RS05150 - hypothetical protein, at 230,967 to 232,178
_RS05150
HMPREF1058_RS05145: HMPREF1058_RS05145 - ATP-binding protein, at 232,281 to 233,459
_RS05145
HMPREF1058_RS05140: HMPREF1058_RS05140 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 233,502 to 237,047
_RS05140
Position (kb) 232
233
234 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 231.297 kb on + strand, within HMPREF1058_RS05150 at 231.342 kb on + strand, within HMPREF1058_RS05150 at 231.343 kb on - strand, within HMPREF1058_RS05150 at 231.343 kb on - strand, within HMPREF1058_RS05150 at 231.361 kb on + strand, within HMPREF1058_RS05150 at 231.453 kb on + strand, within HMPREF1058_RS05150 at 231.455 kb on + strand, within HMPREF1058_RS05150 at 231.463 kb on - strand, within HMPREF1058_RS05150 at 231.555 kb on + strand, within HMPREF1058_RS05150 at 231.587 kb on + strand, within HMPREF1058_RS05150 at 231.610 kb on - strand, within HMPREF1058_RS05150 at 231.735 kb on + strand, within HMPREF1058_RS05150 at 231.735 kb on + strand, within HMPREF1058_RS05150 at 231.736 kb on - strand, within HMPREF1058_RS05150 at 231.743 kb on + strand, within HMPREF1058_RS05150 at 231.786 kb on + strand, within HMPREF1058_RS05150 at 232.016 kb on - strand, within HMPREF1058_RS05150 at 232.073 kb on + strand at 232.075 kb on + strand at 232.075 kb on + strand at 232.075 kb on + strand at 232.075 kb on + strand at 232.075 kb on + strand at 232.076 kb on - strand at 232.076 kb on - strand at 232.164 kb on + strand at 232.247 kb on + strand at 232.248 kb on - strand at 232.360 kb on + strand at 232.504 kb on - strand, within HMPREF1058_RS05145 at 232.505 kb on + strand, within HMPREF1058_RS05145 at 232.505 kb on + strand, within HMPREF1058_RS05145 at 232.638 kb on - strand, within HMPREF1058_RS05145 at 232.707 kb on - strand, within HMPREF1058_RS05145 at 232.773 kb on + strand, within HMPREF1058_RS05145 at 232.773 kb on + strand, within HMPREF1058_RS05145 at 232.848 kb on + strand, within HMPREF1058_RS05145 at 232.879 kb on - strand, within HMPREF1058_RS05145 at 232.948 kb on + strand, within HMPREF1058_RS05145 at 232.952 kb on + strand, within HMPREF1058_RS05145 at 232.954 kb on + strand, within HMPREF1058_RS05145 at 232.954 kb on + strand, within HMPREF1058_RS05145 at 232.954 kb on + strand, within HMPREF1058_RS05145 at 232.954 kb on + strand, within HMPREF1058_RS05145 at 232.955 kb on - strand, within HMPREF1058_RS05145 at 232.996 kb on + strand, within HMPREF1058_RS05145 at 233.010 kb on + strand, within HMPREF1058_RS05145 at 233.291 kb on + strand, within HMPREF1058_RS05145 at 233.291 kb on + strand, within HMPREF1058_RS05145 at 233.372 kb on + strand at 233.388 kb on + strand at 233.452 kb on + strand at 233.556 kb on - strand at 233.556 kb on - strand at 233.562 kb on + strand at 233.585 kb on + strand at 233.792 kb on + strand at 233.830 kb on + strand at 233.840 kb on - strand at 233.849 kb on + strand at 233.944 kb on + strand, within HMPREF1058_RS05140 at 233.985 kb on - strand, within HMPREF1058_RS05140 at 234.235 kb on + strand, within HMPREF1058_RS05140 at 234.412 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source remove 231,297 + HMPREF1058_RS05150 0.27 -0.1 231,342 + HMPREF1058_RS05150 0.31 -0.8 231,343 - HMPREF1058_RS05150 0.31 -1.5 231,343 - HMPREF1058_RS05150 0.31 -1.5 231,361 + HMPREF1058_RS05150 0.33 +0.4 231,453 + HMPREF1058_RS05150 0.40 -0.9 231,455 + HMPREF1058_RS05150 0.40 -0.3 231,463 - HMPREF1058_RS05150 0.41 +0.3 231,555 + HMPREF1058_RS05150 0.49 +0.0 231,587 + HMPREF1058_RS05150 0.51 +0.7 231,610 - HMPREF1058_RS05150 0.53 +0.6 231,735 + HMPREF1058_RS05150 0.63 +0.4 231,735 + HMPREF1058_RS05150 0.63 +2.3 231,736 - HMPREF1058_RS05150 0.63 -0.8 231,743 + HMPREF1058_RS05150 0.64 -0.4 231,786 + HMPREF1058_RS05150 0.68 +3.0 232,016 - HMPREF1058_RS05150 0.87 -0.4 232,073 + +1.9 232,075 + +1.9 232,075 + +1.8 232,075 + +2.7 232,075 + -0.4 232,075 + +2.0 232,076 - -1.3 232,076 - -0.0 232,164 + +0.7 232,247 + +3.0 232,248 - -3.0 232,360 + -3.9 232,504 - HMPREF1058_RS05145 0.19 -2.1 232,505 + HMPREF1058_RS05145 0.19 -3.9 232,505 + HMPREF1058_RS05145 0.19 -1.2 232,638 - HMPREF1058_RS05145 0.30 -0.1 232,707 - HMPREF1058_RS05145 0.36 -1.9 232,773 + HMPREF1058_RS05145 0.42 -2.7 232,773 + HMPREF1058_RS05145 0.42 -4.2 232,848 + HMPREF1058_RS05145 0.48 -2.9 232,879 - HMPREF1058_RS05145 0.51 -0.4 232,948 + HMPREF1058_RS05145 0.57 -2.4 232,952 + HMPREF1058_RS05145 0.57 -2.1 232,954 + HMPREF1058_RS05145 0.57 -4.5 232,954 + HMPREF1058_RS05145 0.57 -2.1 232,954 + HMPREF1058_RS05145 0.57 -3.4 232,954 + HMPREF1058_RS05145 0.57 -1.8 232,955 - HMPREF1058_RS05145 0.57 -3.3 232,996 + HMPREF1058_RS05145 0.61 -1.5 233,010 + HMPREF1058_RS05145 0.62 -2.7 233,291 + HMPREF1058_RS05145 0.86 -2.8 233,291 + HMPREF1058_RS05145 0.86 -3.6 233,372 + -2.2 233,388 + -2.1 233,452 + -2.7 233,556 - +0.2 233,556 - -1.8 233,562 + +0.1 233,585 + -1.0 233,792 + -0.1 233,830 + -0.1 233,840 - +0.2 233,849 + -1.8 233,944 + HMPREF1058_RS05140 0.12 -1.6 233,985 - HMPREF1058_RS05140 0.14 -1.4 234,235 + HMPREF1058_RS05140 0.21 -1.3 234,412 + -1.1
Or see this region's nucleotide sequence