Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05145

Experiment: 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS05150 and HMPREF1058_RS05145 are separated by 102 nucleotidesHMPREF1058_RS05145 and HMPREF1058_RS05140 are separated by 42 nucleotides HMPREF1058_RS05150: HMPREF1058_RS05150 - hypothetical protein, at 230,967 to 232,178 _RS05150 HMPREF1058_RS05145: HMPREF1058_RS05145 - ATP-binding protein, at 232,281 to 233,459 _RS05145 HMPREF1058_RS05140: HMPREF1058_RS05140 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 233,502 to 237,047 _RS05140 Position (kb) 232 233 234Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 231.297 kb on + strand, within HMPREF1058_RS05150at 231.342 kb on + strand, within HMPREF1058_RS05150at 231.343 kb on - strand, within HMPREF1058_RS05150at 231.343 kb on - strand, within HMPREF1058_RS05150at 231.361 kb on + strand, within HMPREF1058_RS05150at 231.453 kb on + strand, within HMPREF1058_RS05150at 231.455 kb on + strand, within HMPREF1058_RS05150at 231.463 kb on - strand, within HMPREF1058_RS05150at 231.555 kb on + strand, within HMPREF1058_RS05150at 231.587 kb on + strand, within HMPREF1058_RS05150at 231.610 kb on - strand, within HMPREF1058_RS05150at 231.735 kb on + strand, within HMPREF1058_RS05150at 231.735 kb on + strand, within HMPREF1058_RS05150at 231.736 kb on - strand, within HMPREF1058_RS05150at 231.743 kb on + strand, within HMPREF1058_RS05150at 231.786 kb on + strand, within HMPREF1058_RS05150at 232.016 kb on - strand, within HMPREF1058_RS05150at 232.073 kb on + strandat 232.075 kb on + strandat 232.075 kb on + strandat 232.075 kb on + strandat 232.075 kb on + strandat 232.075 kb on + strandat 232.076 kb on - strandat 232.076 kb on - strandat 232.164 kb on + strandat 232.247 kb on + strandat 232.248 kb on - strandat 232.360 kb on + strandat 232.504 kb on - strand, within HMPREF1058_RS05145at 232.505 kb on + strand, within HMPREF1058_RS05145at 232.505 kb on + strand, within HMPREF1058_RS05145at 232.638 kb on - strand, within HMPREF1058_RS05145at 232.707 kb on - strand, within HMPREF1058_RS05145at 232.773 kb on + strand, within HMPREF1058_RS05145at 232.773 kb on + strand, within HMPREF1058_RS05145at 232.848 kb on + strand, within HMPREF1058_RS05145at 232.879 kb on - strand, within HMPREF1058_RS05145at 232.948 kb on + strand, within HMPREF1058_RS05145at 232.952 kb on + strand, within HMPREF1058_RS05145at 232.954 kb on + strand, within HMPREF1058_RS05145at 232.954 kb on + strand, within HMPREF1058_RS05145at 232.954 kb on + strand, within HMPREF1058_RS05145at 232.954 kb on + strand, within HMPREF1058_RS05145at 232.955 kb on - strand, within HMPREF1058_RS05145at 232.996 kb on + strand, within HMPREF1058_RS05145at 233.010 kb on + strand, within HMPREF1058_RS05145at 233.291 kb on + strand, within HMPREF1058_RS05145at 233.291 kb on + strand, within HMPREF1058_RS05145at 233.372 kb on + strandat 233.388 kb on + strandat 233.452 kb on + strandat 233.556 kb on - strandat 233.556 kb on - strandat 233.562 kb on + strandat 233.585 kb on + strandat 233.792 kb on + strandat 233.830 kb on + strandat 233.840 kb on - strandat 233.849 kb on + strandat 233.944 kb on + strand, within HMPREF1058_RS05140at 233.985 kb on - strand, within HMPREF1058_RS05140at 234.235 kb on + strand, within HMPREF1058_RS05140at 234.412 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxycitidine 5' monophosphate 1 mM phosphorus source
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231,297 + HMPREF1058_RS05150 0.27 -0.1
231,342 + HMPREF1058_RS05150 0.31 -0.8
231,343 - HMPREF1058_RS05150 0.31 -1.5
231,343 - HMPREF1058_RS05150 0.31 -1.5
231,361 + HMPREF1058_RS05150 0.33 +0.4
231,453 + HMPREF1058_RS05150 0.40 -0.9
231,455 + HMPREF1058_RS05150 0.40 -0.3
231,463 - HMPREF1058_RS05150 0.41 +0.3
231,555 + HMPREF1058_RS05150 0.49 +0.0
231,587 + HMPREF1058_RS05150 0.51 +0.7
231,610 - HMPREF1058_RS05150 0.53 +0.6
231,735 + HMPREF1058_RS05150 0.63 +0.4
231,735 + HMPREF1058_RS05150 0.63 +2.3
231,736 - HMPREF1058_RS05150 0.63 -0.8
231,743 + HMPREF1058_RS05150 0.64 -0.4
231,786 + HMPREF1058_RS05150 0.68 +3.0
232,016 - HMPREF1058_RS05150 0.87 -0.4
232,073 + +1.9
232,075 + +1.9
232,075 + +1.8
232,075 + +2.7
232,075 + -0.4
232,075 + +2.0
232,076 - -1.3
232,076 - -0.0
232,164 + +0.7
232,247 + +3.0
232,248 - -3.0
232,360 + -3.9
232,504 - HMPREF1058_RS05145 0.19 -2.1
232,505 + HMPREF1058_RS05145 0.19 -3.9
232,505 + HMPREF1058_RS05145 0.19 -1.2
232,638 - HMPREF1058_RS05145 0.30 -0.1
232,707 - HMPREF1058_RS05145 0.36 -1.9
232,773 + HMPREF1058_RS05145 0.42 -2.7
232,773 + HMPREF1058_RS05145 0.42 -4.2
232,848 + HMPREF1058_RS05145 0.48 -2.9
232,879 - HMPREF1058_RS05145 0.51 -0.4
232,948 + HMPREF1058_RS05145 0.57 -2.4
232,952 + HMPREF1058_RS05145 0.57 -2.1
232,954 + HMPREF1058_RS05145 0.57 -4.5
232,954 + HMPREF1058_RS05145 0.57 -2.1
232,954 + HMPREF1058_RS05145 0.57 -3.4
232,954 + HMPREF1058_RS05145 0.57 -1.8
232,955 - HMPREF1058_RS05145 0.57 -3.3
232,996 + HMPREF1058_RS05145 0.61 -1.5
233,010 + HMPREF1058_RS05145 0.62 -2.7
233,291 + HMPREF1058_RS05145 0.86 -2.8
233,291 + HMPREF1058_RS05145 0.86 -3.6
233,372 + -2.2
233,388 + -2.1
233,452 + -2.7
233,556 - +0.2
233,556 - -1.8
233,562 + +0.1
233,585 + -1.0
233,792 + -0.1
233,830 + -0.1
233,840 - +0.2
233,849 + -1.8
233,944 + HMPREF1058_RS05140 0.12 -1.6
233,985 - HMPREF1058_RS05140 0.14 -1.4
234,235 + HMPREF1058_RS05140 0.21 -1.3
234,412 + -1.1

Or see this region's nucleotide sequence